mRNA_L-elsbetiae_contig772.16668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig772.16668.1
Unique NamemRNA_L-elsbetiae_contig772.16668.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig772.16668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig772contigL-elsbetiae_contig772:17112..18666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_004140.1
Exons1
Model size1555
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig772.16668.1prot_L-elsbetiae_contig772.16668.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig772 17255..18184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.7201552-UTR-L-elsbetiae_contig772:17111..172541622816857.7201552-UTR-L-elsbetiae_contig772:17111..17254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 17112..17254 +
1691683866.0282192-UTR-L-elsbetiae_contig772:17111..172541691683866.0282192-UTR-L-elsbetiae_contig772:17111..17254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 17112..17254 +
1622816857.7419646-UTR-L-elsbetiae_contig772:18184..186661622816857.7419646-UTR-L-elsbetiae_contig772:18184..18666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 18185..18666 +
1691683866.0555158-UTR-L-elsbetiae_contig772:18184..186661691683866.0555158-UTR-L-elsbetiae_contig772:18184..18666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 18185..18666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.7318916-CDS-L-elsbetiae_contig772:17254..181841622816857.7318916-CDS-L-elsbetiae_contig772:17254..18184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 17255..18184 +
1691683866.0412714-CDS-L-elsbetiae_contig772:17254..181841691683866.0412714-CDS-L-elsbetiae_contig772:17254..18184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 17255..18184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig772.16668.1

>prot_L-elsbetiae_contig772.16668.1 ID=prot_L-elsbetiae_contig772.16668.1|Name=mRNA_L-elsbetiae_contig772.16668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=310bp
MPTLRPSCGGKDCTTWPSYGVQGTNKRLFCARHAGQDMVDLKSKICIHRG
CRKQATFGVLGRTREFCAGHATEGTVCLRGQNRGLQKKSAPRSDSKNDAN
IAAAAATSSSKHSGSQPTWRARDGCRHPRCKTWPSFGIAGSKVREFCARH
ADEGMENVITAHRRGPAAASASVDSLSRHDNRWCACRGCAEAPAHVYRLD
TSKTAKYCALHAPGGRINLTSRDPALRSDDTSGSPMQESAEVSVGDAGVA
NMKREGDDDAPRRGGDGKEQAFRATFFGEVGVFRGLMKKRKKRKMVMGNE
FMALSGSCG*
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mRNA from alignment at L-elsbetiae_contig772:17112..18666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig772.16668.1 ID=mRNA_L-elsbetiae_contig772.16668.1|Name=mRNA_L-elsbetiae_contig772.16668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1555bp|location=Sequence derived from alignment at L-elsbetiae_contig772:17112..18666+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCAGCACCACAGAATCAACCTTCCTTCGCCGATTAGTGGATCCGCAGC
AGCAGAAGAGTCGCTGCTATTCTCACCATCTGATTTCAAACATCTAGACT
AGATACACAGCTTGGGACCACTTCACACAGCCCAGGACTCGACATGCCAA
CGTTACGGCCGTCTTGCGGTGGTAAGGATTGTACAACGTGGCCATCATAT
GGAGTGCAGGGGACGAACAAGAGACTGTTTTGCGCAAGACACGCTGGGCA
AGATATGGTCGACTTGAAGAGCAAGATTTGCATCCACCGGGGTTGCAGGA
AGCAAGCGACGTTTGGCGTTTTGGGAAGGACGCGAGAATTCTGCGCTGGG
CACGCTACGGAAGGGACGGTTTGCCTCAGGGGCCAAAACCGAGGTTTGCA
GAAGAAATCTGCACCCCGGAGTGACTCCAAAAACGACGCGAACATTGCAG
CAGCAGCAGCAACATCTTCGTCGAAGCACTCAGGATCTCAGCCGACATGG
CGGGCGCGAGACGGATGTAGGCACCCCCGTTGCAAAACCTGGCCGTCGTT
TGGAATCGCGGGGAGCAAGGTGCGAGAGTTCTGCGCCAGGCACGCCGATG
AGGGAATGGAGAACGTCATCACAGCGCACAGGCGTGGCCCGGCTGCGGCA
TCCGCCTCCGTGGACAGCCTTTCTCGGCACGACAACAGGTGGTGCGCCTG
CCGAGGCTGCGCCGAAGCACCGGCCCACGTCTACCGGTTGGACACCAGCA
AGACGGCGAAGTACTGCGCCCTTCACGCGCCGGGCGGAAGGATTAACCTC
ACCTCTCGAGACCCGGCACTCCGCTCCGACGACACAAGCGGGAGTCCCAT
GCAAGAGTCCGCTGAGGTCAGCGTCGGAGACGCTGGTGTGGCGAACATGA
AGAGAGAAGGGGATGACGATGCGCCGAGGAGAGGAGGCGACGGGAAGGAG
CAAGCCTTTCGGGCCACTTTTTTCGGCGAAGTGGGCGTCTTCAGAGGGCT
GATGAAAAAAAGGAAGAAGAGGAAGATGGTGATGGGAAATGAATTCATGG
CTCTGTCTGGCTCCTGTGGCTAAGCCTATACCCCCAACCCGGATAGAATA
GCGATAAGCAGTATCACGCACGTTCTCGCCGTGTGTAGTTCGCCCGTGGG
GCGGCTGGGCGTTTTGTTGATCTTGGGCGTGTGGGTCGCAACGTCACTTC
TACAGATGACCGTGGTTCTTCCATCCAGTTTTTGCCAGTGTCAAAGCGCT
CAGCCCCCCCCCCCCCCTCGCTCCCAATCGCTGGCAAATATGTATGGTCC
GTGGACGTGCTCCGACGGTATGCATTGGTTTGTGCTTGTTATTGCGCGAG
CATGCGAGATGGTGTTGTACAAGTATGACGCGCCGACTCTCACGAGGCTG
GGGTAGTAGTGTACATGATGTACACCAGTAAGTAGCCTTTGGTACCTCGT
TAGAGGGACCTCCATCCCGCCGCCGTGTGAAATTGCAGCCCGGGCGATCA
GCGGCCGGGCGGCGGCCGACGTGCAGCTCTGCGCTAGCAAGCGCCTGGAC
TGACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig772:17112..18666+

>mRNA_L-elsbetiae_contig772.16668.1 ID=mRNA_L-elsbetiae_contig772.16668.1|Name=mRNA_L-elsbetiae_contig772.16668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1860bp|location=Sequence derived from alignment at L-elsbetiae_contig772:17112..18666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAACGTTACGGCCGTCTTGCGGTGGTAAGGATTGTACAACGTGGCC
ATCATATGGAGTGCAGGGGACGAACAAGAGACTGTTTTGCGCAAGACACG
CTGGGCAAGATATGGTCGACTTGAAGAGCAAGATTTGCATCCACCGGGGT
TGCAGGAAGCAAGCGACGTTTGGCGTTTTGGGAAGGACGCGAGAATTCTG
CGCTGGGCACGCTACGGAAGGGACGGTTTGCCTCAGGGGCCAAAACCGAG
GTTTGCAGAAGAAATCTGCACCCCGGAGTGACTCCAAAAACGACGCGAAC
ATTGCAGCAGCAGCAGCAACATCTTCGTCGAAGCACTCAGGATCTCAGCC
GACATGGCGGGCGCGAGACGGATGTAGGCACCCCCGTTGCAAAACCTGGC
CGTCGTTTGGAATCGCGGGGAGCAAGGTGCGAGAGTTCTGCGCCAGGCAC
GCCGATGAGGGAATGGAGAACGTCATCACAGCGCACAGGCGTGGCCCGGC
TGCGGCATCCGCCTCCGTGGACAGCCTTTCTCGGCACGACAACAGGTGGT
GCGCCTGCCGAGGCTGCGCCGAAGCACCGGCCCACGTCTACCGGTTGGAC
ACCAGCAAGACGGCGAAGTACTGCGCCCTTCACGCGCCGGGCGGAAGGAT
TAACCTCACCTCTCGAGACCCGGCACTCCGCTCCGACGACACAAGCGGGA
GTCCCATGCAAGAGTCCGCTGAGGTCAGCGTCGGAGACGCTGGTGTGGCG
AACATGAAGAGAGAAGGGGATGACGATGCGCCGAGGAGAGGAGGCGACGG
GAAGGAGCAAGCCTTTCGGGCCACTTTTTTCGGCGAAGTGGGCGTCTTCA
GAGGGCTGATGAAAAAAAGGAAGAAGAGGAAGATGGTGATGGGAAATGAA
TTCATGGCTCTGTCTGGCTCCTGTGGCTAAATGCCAACGTTACGGCCGTC
TTGCGGTGGTAAGGATTGTACAACGTGGCCATCATATGGAGTGCAGGGGA
CGAACAAGAGACTGTTTTGCGCAAGACACGCTGGGCAAGATATGGTCGAC
TTGAAGAGCAAGATTTGCATCCACCGGGGTTGCAGGAAGCAAGCGACGTT
TGGCGTTTTGGGAAGGACGCGAGAATTCTGCGCTGGGCACGCTACGGAAG
GGACGGTTTGCCTCAGGGGCCAAAACCGAGGTTTGCAGAAGAAATCTGCA
CCCCGGAGTGACTCCAAAAACGACGCGAACATTGCAGCAGCAGCAGCAAC
ATCTTCGTCGAAGCACTCAGGATCTCAGCCGACATGGCGGGCGCGAGACG
GATGTAGGCACCCCCGTTGCAAAACCTGGCCGTCGTTTGGAATCGCGGGG
AGCAAGGTGCGAGAGTTCTGCGCCAGGCACGCCGATGAGGGAATGGAGAA
CGTCATCACAGCGCACAGGCGTGGCCCGGCTGCGGCATCCGCCTCCGTGG
ACAGCCTTTCTCGGCACGACAACAGGTGGTGCGCCTGCCGAGGCTGCGCC
GAAGCACCGGCCCACGTCTACCGGTTGGACACCAGCAAGACGGCGAAGTA
CTGCGCCCTTCACGCGCCGGGCGGAAGGATTAACCTCACCTCTCGAGACC
CGGCACTCCGCTCCGACGACACAAGCGGGAGTCCCATGCAAGAGTCCGCT
GAGGTCAGCGTCGGAGACGCTGGTGTGGCGAACATGAAGAGAGAAGGGGA
TGACGATGCGCCGAGGAGAGGAGGCGACGGGAAGGAGCAAGCCTTTCGGG
CCACTTTTTTCGGCGAAGTGGGCGTCTTCAGAGGGCTGATGAAAAAAAGG
AAGAAGAGGAAGATGGTGATGGGAAATGAATTCATGGCTCTGTCTGGCTC
CTGTGGCTAA
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