mRNA_L-elsbetiae_contig772.16666.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig772.16666.1
Unique NamemRNA_L-elsbetiae_contig772.16666.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig772.16666.1 vs. uniprot
Match: A0A6H5K1C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.870e-17
Identity = 60/114 (52.63%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    1 GRWSSGVWKRGASSGDRPTSMGSSSHGGERRSSAAGSLVLVMHPDTGTRLHCPHCDEEVAGCGFKGCSGSLVQAPSDDDFGRSDDDELFGPEVFVAPPLPPPL-FPKLGPHTSA 339
            GRW+SGV +RG S  +R  SM  S+ GGE RSS   SLV  M  + GTRLHCPHC +EVAGCGF+GCSGSL++ PS  D         FGPE     P P P+  P LG  +SA
Sbjct:  533 GRWTSGVRRRGKSK-ERAASMAGST-GGETRSSGVKSLV--MFAEYGTRLHCPHCSKEVAGCGFRGCSGSLIRKPSFSD--------EFGPEESFTLPAPQPMRAPALGGFSSA 634
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BLAST of mRNA_L-elsbetiae_contig772.16666.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.720e-16
Identity = 59/114 (51.75%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:    1 GRWSSGVWKRGASSGDRPTSMGSSSHGGERRSSAAGSLVLVMHPDTGTRLHCPHCDEEVAGCGFKGCSGSLVQAPSDDDFGRSDDDELFGPEVFVAPPLPPPL-FPKLGPHTSA 339
            GRW+SGV +RG S  +R  S+  S+ GGE RSS   SLV  M  + GTRLHCPHC +EVAGCGF+GCSGSL++ PS  D         FGPE     P P P+  P  G  TSA
Sbjct:  564 GRWTSGVRRRGKSK-ERAASVAGSA-GGETRSSGVKSLV--MFAEYGTRLHCPHCSKEVAGCGFRGCSGSLIRKPSFSD--------EFGPEESFTLPAPQPVRAPAFGGFTSA 665
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig772.16666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1C2_9PHAE3.870e-1752.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH00_ECTSI1.720e-1651.75G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig772contigL-elsbetiae_contig772:1667..3054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1360
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig772.16666.1prot_L-elsbetiae_contig772.16666.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig772 1727..2183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.4968688-UTR-L-elsbetiae_contig772:1666..17261622816857.4968688-UTR-L-elsbetiae_contig772:1666..1726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 1667..1726 +
1691683865.8741636-UTR-L-elsbetiae_contig772:1666..17261691683865.8741636-UTR-L-elsbetiae_contig772:1666..1726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 1667..1726 +
1622816857.5340338-UTR-L-elsbetiae_contig772:2183..30541622816857.5340338-UTR-L-elsbetiae_contig772:2183..3054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 2184..3054 +
1691683865.9135273-UTR-L-elsbetiae_contig772:2183..30541691683865.9135273-UTR-L-elsbetiae_contig772:2183..3054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 2184..3054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.5103312-CDS-L-elsbetiae_contig772:1726..20231622816857.5103312-CDS-L-elsbetiae_contig772:1726..2023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 1727..2023 +
1691683865.887742-CDS-L-elsbetiae_contig772:1726..20231691683865.887742-CDS-L-elsbetiae_contig772:1726..2023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 1727..2023 +
1622816857.5218296-CDS-L-elsbetiae_contig772:2051..21831622816857.5218296-CDS-L-elsbetiae_contig772:2051..2183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 2052..2183 +
1691683865.904365-CDS-L-elsbetiae_contig772:2051..21831691683865.904365-CDS-L-elsbetiae_contig772:2051..2183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 2052..2183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig772.16666.1

>prot_L-elsbetiae_contig772.16666.1 ID=prot_L-elsbetiae_contig772.16666.1|Name=mRNA_L-elsbetiae_contig772.16666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MGSSSHGGERRSSAAGSLVLVMHPDTGTRLHCPHCDEEVAGCGFKGCSGS
LVQAPSDDDFGRSDDDELFGPEVFVAPPLPPPLFPKLGPHTSAADAAAAP
QPPPRATAVLVIFLGAAAGEAGAEEEVHRRPRPVRTMSRAAT*
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mRNA from alignment at L-elsbetiae_contig772:1667..3054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig772.16666.1 ID=mRNA_L-elsbetiae_contig772.16666.1|Name=mRNA_L-elsbetiae_contig772.16666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1388bp|location=Sequence derived from alignment at L-elsbetiae_contig772:1667..3054+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGGTGGTCCAGCGGGGTGTGGAAGCGAGGGGCGTCGTCGGGCGACAG
GCCCACGTCGATGGGGAGCAGCTCCCACGGCGGCGAGAGGCGCAGCAGCG
CGGCGGGCTCGCTGGTGCTGGTGATGCACCCGGACACGGGGACGAGGCTC
CACTGCCCCCACTGCGACGAGGAGGTAGCCGGATGTGGCTTCAAGGGGTG
CTCGGGCTCGCTCGTGCAGGCGCCGAGCGACGATGACTTCGGGAGGAGCG
ACGACGACGAGCTGTTCGGGCCGGAGGTGTTCGTCGCCCCGCCGCTGCCG
CCGCCCCTCTTCCCGAAGCTGGGCCCTCACACGTCGGCGGCGGACGCCGC
CGCCGCAGCCGCAGCCGCAGCCGCCGCCGCCGCAGCCGCAGCCGCCGCCG
CGGGCGACAGCGGTACTAGTTATTTTTCTGGGGGCGGCGGCGGGGGAAGC
CGGGGCGGAGGAGGAGGTTCATCGACGTCCGCGTCCGGTTCGCACTATGT
CCCGAGCGGCAACATAATGTCCCCCTCTGCGCAGACATCTGCCAGCATGC
TTGGCGGCGGCACTCAGGCGCACGTGATGGCGGCGCACACCGCCGCCGCC
ACGGCCCTGCCCCCCGCGCACAAGAACCTGTCGATGGGGGGACCGGCCAG
CCGGCTGCGGATGAGCTTCCGGAGGGGGCGGTCCCCATGCGACACGTTCG
ACAACGAGAGCGACGACGACGAAGATGAGGACGACGACTTCGGCGAGGGG
GACGAGAGCCAGAGGTCGAACCTCTGCATTTATTCGCCTACGTCTTCGTC
GGCGTGGGCGTGAATAAAGGCGGGATGGCGGCATCGGTTGATGCGGCGGC
GGCGGCGTAGTGAGGGCGATGGCGACGGCGACGGTGACTTTCCTCTCCCT
TTCTCTCTCTCTCTCTCTCTCTCGCTGTTCTTGGACGAAGTGATGCCGCT
GCCCCTGCTAGCGCGGGGTAGTGTCCCGCCGCTGTTGCTATAACTGTAGA
GGTGCATGTGTGTGAAAATAAAGACAAGGCAAAAAGAGAGAAATGTAAAC
CAAGACGGTGCGAGAAATGTAGTTAGTGTCGACCGCTCCCTCCCCCCACC
ACCTCGAGGGTGGAACGAACAGAATGGTGTGTGCTGCGAGCCCAGCCATT
AAATCGGTGGTCGGTACCCCCACCTTCTCCGTTTGTGCCTTTATATATTT
TGGTTCTGGTCTGGTCTCGGACGTCACGCGAGCGTGCTTTCGTGAGACGA
CGAGATGACTGCAGACACGGCAGTCAGAGGAGCCCGCGTGTGATGTTCTC
GTGTACAGACCGAGCGGGAGCGTTGTTTGGTAGATTTCCATTCCTTCCTG
CCAGGCGCTTTTGGAAGTACGCCCCCGCGTGCGTGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig772:1667..3054+

>mRNA_L-elsbetiae_contig772.16666.1 ID=mRNA_L-elsbetiae_contig772.16666.1|Name=mRNA_L-elsbetiae_contig772.16666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig772:1667..3054+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAGCAGCTCCCACGGCGGCGAGAGGCGCAGCAGCGCGGCGGGCTC
GCTGGTGCTGGTGATGCACCCGGACACGGGGACGAGGCTCCACTGCCCCC
ACTGCGACGAGGAGGTAGCCGGATGTGGCTTCAAGGGGTGCTCGGGCTCG
CTCGTGCAGGCGCCGAGCGACGATGACTTCGGGAGGAGCGACGACGACGA
GCTGTTCGGGCCGGAGGTGTTCGTCGCCCCGCCGCTGCCGCCGCCCCTCT
TCCCGAAGCTGGGCCCTCACACGTCGGCGGCGGACGCCGCCGCCGCAATG
GGGAGCAGCTCCCACGGCGGCGAGAGGCGCAGCAGCGCGGCGGGCTCGCT
GGTGCTGGTGATGCACCCGGACACGGGGACGAGGCTCCACTGCCCCCACT
GCGACGAGGAGGTAGCCGGATGTGGCTTCAAGGGGTGCTCGGGCTCGCTC
GTGCAGGCGCCGAGCGACGATGACTTCGGGAGGAGCGACGACGACGAGCT
GTTCGGGCCGGAGGTGTTCGTCGCCCCGCCGCTGCCGCCGCCCCTCTTCC
CGAAGCTGGGCCCTCACACGTCGGCGGCGGACGCCGCCGCCGCACCGCAG
CCGCCGCCGCGGGCGACAGCGGTACTAGTTATTTTTCTGGGGGCGGCGGC
GGGGGAAGCCGGGGCGGAGGAGGAGGTTCATCGACGTCCGCGTCCGGTTC
GCACTATGTCCCGAGCGGCAACATAACCGCAGCCGCCGCCGCGGGCGACA
GCGGTACTAGTTATTTTTCTGGGGGCGGCGGCGGGGGAAGCCGGGGCGGA
GGAGGAGGTTCATCGACGTCCGCGTCCGGTTCGCACTATGTCCCGAGCGG
CAACATAA
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