mRNA_L-elsbetiae_contig772.16664.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig772.16664.1
Unique NamemRNA_L-elsbetiae_contig772.16664.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig772.16664.1 vs. uniprot
Match: A0A6H5K1C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.590e-16
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 QVRRTTEAMAIVLAGVGSLFSILAPKVLRAKHELEGKALVGPSAVV----TGP--SGS-GDALFGIERGELGGDGGDGP-PRTSTPSGVSSVG 255
            QVRRTTE +AI+LAGVG LF +L  ++LRAK ELEGKALV PSA      TGP  SGS GDAL G+  GE   DG + P PRT+TPSGVSSVG
Sbjct:   24 QVRRTTEGVAILLAGVGVLFPVLGTRLLRAKQELEGKALVAPSAAAAAAATGPGTSGSVGDALRGV--GERAMDGDEYPEPRTTTPSGVSSVG 114
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BLAST of mRNA_L-elsbetiae_contig772.16664.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.620e-15
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 QVRRTTEAMAIVLAGVGSLFSILAPKVLRAKHELEGKALVGPSAVV--TGPS--GS-GDALFGIERGELGGDGGDGP-PRTSTPSG 240
            QVRRTTE +AI+LAGVG LF +L  +VLRAK ELEGKALVGPSA    TGP   GS GDAL+G+  GE   DG + P PRT+TPSG
Sbjct:  307 QVRRTTEGVAILLAGVGVLFPVLGTRVLRAKQELEGKALVGPSAAAAATGPGTGGSVGDALYGV--GERAMDGDEYPEPRTTTPSG 390
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig772.16664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1C2_9PHAE1.590e-1664.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH00_ECTSI2.620e-1565.12G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig772contigL-elsbetiae_contig772:152..693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size396
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig772.16664.1prot_L-elsbetiae_contig772.16664.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig772 176..693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.4360466-UTR-L-elsbetiae_contig772:151..1751622816857.4360466-UTR-L-elsbetiae_contig772:151..175Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 152..175 +
1691683865.8420086-UTR-L-elsbetiae_contig772:151..1751691683865.8420086-UTR-L-elsbetiae_contig772:151..175Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 152..175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.4474337-CDS-L-elsbetiae_contig772:175..4581622816857.4474337-CDS-L-elsbetiae_contig772:175..458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 176..458 +
1691683865.8546376-CDS-L-elsbetiae_contig772:175..4581691683865.8546376-CDS-L-elsbetiae_contig772:175..458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 176..458 +
1622816857.4625525-CDS-L-elsbetiae_contig772:604..6931622816857.4625525-CDS-L-elsbetiae_contig772:604..693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 605..693 +
1691683865.8645813-CDS-L-elsbetiae_contig772:604..6931691683865.8645813-CDS-L-elsbetiae_contig772:604..693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 605..693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig772.16664.1

>prot_L-elsbetiae_contig772.16664.1 ID=prot_L-elsbetiae_contig772.16664.1|Name=mRNA_L-elsbetiae_contig772.16664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MAIVLAGVGSLFSILAPKVLRAKHELEGKALVGPSAVVTGPSGSGDALFG
IERGELGGDGGDGPPRTSTPSGVSSVGGGGGKRMSSGRRRRTLSGGGLVR
VRHHGRSRSPAGPKQRRWRRRRQ*
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mRNA from alignment at L-elsbetiae_contig772:152..693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig772.16664.1 ID=mRNA_L-elsbetiae_contig772.16664.1|Name=mRNA_L-elsbetiae_contig772.16664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=542bp|location=Sequence derived from alignment at L-elsbetiae_contig772:152..693+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCGCAGGACGACGGAGGCGATGGCCATCGTCTTGGCCGGGGTAGG
GTCGCTATTCTCCATCCTCGCTCCGAAGGTCCTGCGCGCGAAGCACGAGC
TGGAGGGCAAGGCCCTCGTCGGCCCTTCCGCCGTGGTGACCGGTCCGAGC
GGCAGCGGGGACGCGCTCTTCGGCATAGAGAGGGGGGAGCTAGGCGGGGA
CGGAGGAGACGGGCCCCCCCGGACGTCAACCCCGAGCGGGGTGAGCAGCG
TGGGCGGCGGCGGCGGCAAGCGCATGAGCAGCGGGCGGCGGCGGCGGACC
CTCTCCGGTACCCCGTCCGGGGGCGACAGCGTGGGCGGCATCCACATCCC
CGCCGGCCTGATAGGCTCCAACAAGTCCACCCACACCGTCAACCCGGACA
TGGACTACGAAGGGGACCAGCAGCCGGAGGTCCCGCCGCCGCTGTCGCCA
AAGGAGGCGGCCTCGTTCGCGTCCGCCACCACGGCCGCAGCCGCAGCCCC
GCAGGACCAAAACAGCGGCGGTGGCGGCGGCGGCGGCAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig772:152..693+

>mRNA_L-elsbetiae_contig772.16664.1 ID=mRNA_L-elsbetiae_contig772.16664.1|Name=mRNA_L-elsbetiae_contig772.16664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig772:152..693+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCATCGTCTTGGCCGGGGTAGGGTCGCTATTCTCCATCCTCGCTCC
GAAGGTCCTGCGCGCGAAGCACGAGCTGGAGGGCAAGGCCCTCGTCGGCC
CTTCCGCCGTGGTGACCGGTCCGAGCGGCAGCGGGGACGCGCTCTTCGGC
ATAGAGAGGGGGGAGCTAGGCGGGGACGGAGGAGACGGGCCCCCCCGGAC
GTCAACCCCGAGCGGGGTGAGCAGCGTGGGCGGCGGCGGCGGCAAGCGCA
TGAGCAGCGGGCGGCGGCGGCGGACCCTCTCCGATGGCCATCGTCTTGGC
CGGGGTAGGGTCGCTATTCTCCATCCTCGCTCCGAAGGTCCTGCGCGCGA
AGCACGAGCTGGAGGGCAAGGCCCTCGTCGGCCCTTCCGCCGTGGTGACC
GGTCCGAGCGGCAGCGGGGACGCGCTCTTCGGCATAGAGAGGGGGGAGCT
AGGCGGGGACGGAGGAGACGGGCCCCCCCGGACGTCAACCCCGAGCGGGG
TGAGCAGCGTGGGCGGCGGCGGCGGCAAGCGCATGAGCAGCGGGCGGCGG
CGGCGGACCCTCTCCGGAGGCGGCCTCGTTCGCGTCCGCCACCACGGCCG
CAGCCGCAGCCCCGCAGGACCAAAACAGCGGCGGTGGCGGCGGCGGCGGC
AGTAGGAGGCGGCCTCGTTCGCGTCCGCCACCACGGCCGCAGCCGCAGCC
CCGCAGGACCAAAACAGCGGCGGTGGCGGCGGCGGCGGCAGTAG
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