mRNA_L-elsbetiae_contig7710.16653.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7710.16653.1
Unique NamemRNA_L-elsbetiae_contig7710.16653.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7710.16653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7710contigL-elsbetiae_contig7710:7786..9001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.4498887-CDS-L-elsbetiae_contig7710:7786..80141622816856.4498887-CDS-L-elsbetiae_contig7710:7786..8014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7710 7787..8014 -
1691683865.091773-CDS-L-elsbetiae_contig7710:7786..80141691683865.091773-CDS-L-elsbetiae_contig7710:7786..8014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7710 7787..8014 -
1622816856.4623423-CDS-L-elsbetiae_contig7710:8920..90011622816856.4623423-CDS-L-elsbetiae_contig7710:8920..9001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7710 8921..9001 -
1691683865.113973-CDS-L-elsbetiae_contig7710:8920..90011691683865.113973-CDS-L-elsbetiae_contig7710:8920..9001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7710 8921..9001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7710.16653.1prot_L-elsbetiae_contig7710.16653.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7710 7787..9001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7710.16653.1

>prot_L-elsbetiae_contig7710.16653.1 ID=prot_L-elsbetiae_contig7710.16653.1|Name=mRNA_L-elsbetiae_contig7710.16653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
LHDALFYRVGDGLGGRGEEKTLPFNERVLEVFAHVRMRPRAEDSTDAKRS
GGGGGPTGGAGTGIGYSSGGGDSGCGGGYSYYPRAMASLDPWGVGEGLRD
ALS
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mRNA from alignment at L-elsbetiae_contig7710:7786..9001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7710.16653.1 ID=mRNA_L-elsbetiae_contig7710.16653.1|Name=mRNA_L-elsbetiae_contig7710.16653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1216bp|location=Sequence derived from alignment at L-elsbetiae_contig7710:7786..9001- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGATGCGCTCTTTTATCGGGTCGGCGACGGCCTTGGCGGGCGCGG
AGAGGAGAAGACGCTGCCCTTCAACGAGCGGGTGCGAGGGGGGGTGTCCG
TGTTAGCATGGACAGATATGGATGGCCATATCGGCAATTGCATATCGGGG
CGTATCGGGTTCGCGTGGTTTTTCGAAGTAAGTAGCACTTATATTTGGTG
ATCTACGGGGACTCCTGAGCACGTTCGTTAGCTGGCGTGGCTTTCGTCCC
TCCTGTGTTCCTCTTGCTCGCTGTCTAAGGCACGTGATCAACTAGACACG
GGCATACATCTCAACATCCTAGGATGCATATGTATATATGTGTGTGTTCA
ATCCACCCCATCATAGGAGCGCGTGGGAATAGGTATAGTTTCGCCCACAG
CAATCCTGAAATCCAAATCCGTACAATACGTCGCGATGAAAACATCACAG
GCAGGCACCGCAGGAGGGGGTCCAACCCCCCGCGTCCTGTGTGACCCTGG
TTGGGTCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCAGTGGGCGGACG
ACGAATAAGCCAAGAATGGGAGGAAAAAATATAAAAACAAAAAATATAAA
ATTACCATGCCGATGGAAATCCACGGCCACAGGCAGCAAGTTGTTGTTGT
TGTTTCTCACATTAGCTCTCTAGTCCAAAACATCCTTGGGGGCCCGTGGT
CACAAAACAAGGCACACTCGACGCCGCGGAAGAAAAATAAAACAAAAATA
TGGTAGTGTACTAGATAGAACCTGTTATTTCTCCGACGAGGAGAAGGAGG
GGGGGGTGGGGTGGGGTGGAGAAACGGCACGCGATAGGTCCGTAGAAAAG
CAAGATTATCTGTCTTTTTGCACGCGGTAAATATATGTGTACCCAAAAAG
CTCAGGTCTCGCCGTCGCTTTTCGCTTGCACCGTGTGTGCTTCGGCTCCT
TTCCCCCCCCCCGCCCCGCCCCACCCAACGCGAGAAGGTGCTCGAGGTCT
TCGCTCACGTTCGCATGCGGCCTAGGGCCGAAGACAGCACCGACGCCAAG
CGCAGCGGCGGCGGCGGCGGTCCCACGGGCGGCGCGGGCACCGGCATCGG
TTACTCTTCCGGAGGCGGTGACAGCGGCTGCGGCGGCGGTTACTCCTACT
ACCCCCGCGCCATGGCAAGCCTTGATCCGTGGGGCGTTGGAGAGGGGCTC
AGGGATGCCCTGTCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7710:7786..9001-

>mRNA_L-elsbetiae_contig7710.16653.1 ID=mRNA_L-elsbetiae_contig7710.16653.1|Name=mRNA_L-elsbetiae_contig7710.16653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig7710:7786..9001- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGATGCGCTCTTTTATCGGGTCGGCGACGGCCTTGGCGGGCGCGG
AGAGGAGAAGACGCTGCCCTTCAACGAGCGGCTGCACGATGCGCTCTTTT
ATCGGGTCGGCGACGGCCTTGGCGGGCGCGGAGAGGAGAAGACGCTGCCC
TTCAACGAGCGGGTGCTCGAGGTCTTCGCTCACGTTCGCATGCGGCCTAG
GGCCGAAGACAGCACCGACGCCAAGCGCAGCGGCGGCGGCGGCGGTCCCA
CGGGCGGCGCGGGCACCGGCATCGGTTACTCTTCCGGAGGCGGTGACAGC
GGCTGCGGCGGCGGTTACTCCTACTACCCCCGCGCCATGGCAAGCCTTGA
TCCGTGGGGCGTTGGAGAGGGGCTCAGGGATGCCCTGTCTGTGCTCGAGG
TCTTCGCTCACGTTCGCATGCGGCCTAGGGCCGAAGACAGCACCGACGCC
AAGCGCAGCGGCGGCGGCGGCGGTCCCACGGGCGGCGCGGGCACCGGCAT
CGGTTACTCTTCCGGAGGCGGTGACAGCGGCTGCGGCGGCGGTTACTCCT
ACTACCCCCGCGCCATGGCAAGCCTTGATCCGTGGGGCGTTGGAGAGGGG
CTCAGGGATGCCCTGTCT
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