mRNA_L-elsbetiae_contig7702.16642.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7702.16642.1
Unique NamemRNA_L-elsbetiae_contig7702.16642.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7702.16642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7702contigL-elsbetiae_contig7702:4044..5567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size365
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7702.16642.1prot_L-elsbetiae_contig7702.16642.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7702 4044..5567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.8929605-CDS-L-elsbetiae_contig7702:4043..40841622816855.8929605-CDS-L-elsbetiae_contig7702:4043..4084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4044..4084 +
1691683864.7137294-CDS-L-elsbetiae_contig7702:4043..40841691683864.7137294-CDS-L-elsbetiae_contig7702:4043..4084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4044..4084 +
1622816855.9046116-CDS-L-elsbetiae_contig7702:4323..43641622816855.9046116-CDS-L-elsbetiae_contig7702:4323..4364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4324..4364 +
1691683864.7253218-CDS-L-elsbetiae_contig7702:4323..43641691683864.7253218-CDS-L-elsbetiae_contig7702:4323..4364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4324..4364 +
1622816855.9207358-CDS-L-elsbetiae_contig7702:4655..47141622816855.9207358-CDS-L-elsbetiae_contig7702:4655..4714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4656..4714 +
1691683864.7364378-CDS-L-elsbetiae_contig7702:4655..47141691683864.7364378-CDS-L-elsbetiae_contig7702:4655..4714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4656..4714 +
1622816855.9343166-CDS-L-elsbetiae_contig7702:4918..50411622816855.9343166-CDS-L-elsbetiae_contig7702:4918..5041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4919..5041 +
1691683864.7484179-CDS-L-elsbetiae_contig7702:4918..50411691683864.7484179-CDS-L-elsbetiae_contig7702:4918..5041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 4919..5041 +
1622816855.9445834-CDS-L-elsbetiae_contig7702:5468..55671622816855.9445834-CDS-L-elsbetiae_contig7702:5468..5567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 5469..5567 +
1691683864.7601771-CDS-L-elsbetiae_contig7702:5468..55671691683864.7601771-CDS-L-elsbetiae_contig7702:5468..5567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7702 5469..5567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7702.16642.1

>prot_L-elsbetiae_contig7702.16642.1 ID=prot_L-elsbetiae_contig7702.16642.1|Name=mRNA_L-elsbetiae_contig7702.16642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
LEVKIHPPLPFHHTRWQSGVGGISSKQGASSSGGAVGGYGGATVAVKADE
SDSSDDEEEEEDRMPPNYEGGSVGESIDQERHEDENNENKRGGGERGEEG
KVGQAKPVRPGAPPVEFSAIG
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mRNA from alignment at L-elsbetiae_contig7702:4044..5567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7702.16642.1 ID=mRNA_L-elsbetiae_contig7702.16642.1|Name=mRNA_L-elsbetiae_contig7702.16642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1524bp|location=Sequence derived from alignment at L-elsbetiae_contig7702:4044..5567+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGAAGTGAAGATCCATCCACCTCTGCCGTTTCATCACACGTACGGCAT
GATTAGGTTGACTCGAGAATGATGATAACTCTGGAATGATCTTGTGATAT
TTGGTACCCTATAATAAATACGGTAGTATATTTCGTGTTCTGGTAGCCTT
GGTGTGGGTGTTGGTAGAAGGTACACTTTCTGTTGTTTGGAACTACATGG
TAAAGAGTATGTTTTGAGCAAATGAAAACTTTGCTGATGGTGCAACTGGG
GATCGTTATTTTCGCAATGTGTGTTGGCAGGCGGTGGCAGAGTGGCGTCG
GCGGCATCAGCAGTAAACAAGGTGAGGGTATGTATGCTATTTATACATGG
CTGCAAAAAATAGGGTGGTAGAAAGCGGAGGTGTTCCGGTCCAGAGATAT
TGAATCGCGTAACTGACGATTAATGTAGAAAGTACTGTGCTTTCGCTGTA
CCGCTTAATTTGTAACTTTTGTGTTTTGATGGGTACCGTCTATCTCGCCT
AGGGAGTGCGCTTGTCCCTTATTAGAACTTAAAACACCGCTATACTTGTT
GCCCCAATCGCCTATTTGCCGAGACTTTTCTGTTTGGGCTAAATACGTAT
GTACCTTTACAGGTGCGAGTTCATCGGGTGGTGCGGTAGGTGGATATGGC
GGTGCCACCGTAGCGGTCAAGGTGAGAGCCGTCAATGCCAGAGGTGGAGC
CTCTGTTGTTTCCTTCAAGTGTTTATGACGCCACGTTCTTCCCCCACCCG
TATCGCGTGCAGATGAGAATGGTGTCGCGCGGTACGGGAGTCAGGTGCAA
AGCCTGCCAGCCTAGCCCTTTTGCAGGCATCAAGCCCTCTCTCCACCTGC
TTCGCGACGTGACTGTACTGTACAGGCCGACGAATCAGACAGTTCCGACG
ATGAAGAGGAGGAAGAAGATAGGATGCCACCTAACTACGAAGGGGGTTCA
GTGGGGGAAAGCATTGACCAGGAGAGGCACGAGGACGAGAACAATGAGGT
GCGGCCTAGTGCCTGCCCTACGCTCGTAGCTAACCTCGCGGTGCTCAGAT
GGGAGATGAACAGCAGGAATGTGCCTAAAATGCTCGTTCCCCTTCTCTGA
GGTGTTCCCGTTGTTGTTGTTGTTGTTACGCCTGCATCTATTGTTGCTGA
TCGCCACTGCTGGATCTCTTGTTTCGGGTTGATGACCTCTCGGGGCGAGG
TCTGATCGTGTGATGACTCCACGGATTGGCGGCCGTAAAAGCGGGGCCCG
GCTGGTGCCGGAGTCTCTGTAACTCTTTGCCACCTATATCCCCTCACGGT
TGACGCCGTGGATGTACTTGAATATTGGACGGAAGTGGGAACTTTCCGCC
GTTTCTTTCTACTTCAGCTTATCGTTTTTTTGCTGCACGATACCTCGTCC
ACGGTTTACTTTTTTTCTTTGATAGAACAAGCGTGGGGGAGGTGAGAGGG
GCGAGGAGGGAAAGGTGGGCCAGGCGAAGCCTGTGAGGCCGGGGGCACCG
CCGGTGGAGTTCTCGGCGATCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7702:4044..5567+

>mRNA_L-elsbetiae_contig7702.16642.1 ID=mRNA_L-elsbetiae_contig7702.16642.1|Name=mRNA_L-elsbetiae_contig7702.16642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig7702:4044..5567+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGAAGTGAAGATCCATCCACCTCTGCCGTTTCATCACACTTGGAAGTG
AAGATCCATCCACCTCTGCCGTTTCATCACACGCGGTGGCAGAGTGGCGT
CGGCGGCATCAGCAGTAAACAAGGCGGTGGCAGAGTGGCGTCGGCGGCAT
CAGCAGTAAACAAGGTGCGAGTTCATCGGGTGGTGCGGTAGGTGGATATG
GCGGTGCCACCGTAGCGGTCAAGGTGCGAGTTCATCGGGTGGTGCGGTAG
GTGGATATGGCGGTGCCACCGTAGCGGTCAAGGCCGACGAATCAGACAGT
TCCGACGATGAAGAGGAGGAAGAAGATAGGATGCCACCTAACTACGAAGG
GGGTTCAGTGGGGGAAAGCATTGACCAGGAGAGGCACGAGGACGAGAACA
ATGAGGCCGACGAATCAGACAGTTCCGACGATGAAGAGGAGGAAGAAGAT
AGGATGCCACCTAACTACGAAGGGGGTTCAGTGGGGGAAAGCATTGACCA
GGAGAGGCACGAGGACGAGAACAATGAGAACAAGCGTGGGGGAGGTGAGA
GGGGCGAGGAGGGAAAGGTGGGCCAGGCGAAGCCTGTGAGGCCGGGGGCA
CCGCCGGTGGAGTTCTCGGCGATCGGCAACAAGCGTGGGGGAGGTGAGAG
GGGCGAGGAGGGAAAGGTGGGCCAGGCGAAGCCTGTGAGGCCGGGGGCAC
CGCCGGTGGAGTTCTCGGCGATCGGC
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