mRNA_L-elsbetiae_contig77.16634.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig77.16634.1 vs. uniprot
Match: D7G6E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E2_ECTSI) HSP 1 Score: 560 bits (1443), Expect = 9.910e-195 Identity = 319/414 (77.05%), Postives = 349/414 (84.30%), Query Frame = 1 Query: 79 SSSDQAAETNAQLASLHEVSAAADLAAMGRRSEAAPLLERAVEICSGSMGPDSALTRAAMHRLALVLYDDQRFGAAEAALTRGLSSAHNRFSTELLLLSKAQLFQGKVVSAVDTCSQAVDLCQQDEDNTPDTDALGQALRQLGATQVLQGAEDDAETSLLRAARLGSTSADQGKGLAALAAFNIARGDEQSVEEAVDLLNEACATTKDTEEEEGEDTETAEGNVPLDVGAGVNGDAAAAFA----AQLAHASVLCTSAQGELILGRGTATASDRLGEALRIREKLLPAGHPATAWTLSLLGRCHLVAGEAVTAEGLFRAALDGLPGVAEEADD-IAKSQRSAGVVAPPVLFASPLHPFSKAAMLRGYSELLMQWEKREAEGEVTARQAETVESSLLLKPPGEITMHMLHLDDAY 1305 SSSDQAAE NAQL SLHEVS A DLAA+GRR+EAA LLERAVEICSGSMG D ALTRAA+HRLA VLYDDQRFGAAEA L +G S+A +F TELLLLSKAQLFQGK+ AV+T S+AVDLCQQDEDNTPDTDALGQALRQLG QVL G EDDAETSLLRAARLGSTSADQGKGLAA+AAFNIARGDEQSVEEAV+LLNEACATT +++E + TA G DAAA+ A A+LAHASVL T+AQGEL+L RGTATAS+RLGEAL+IRE+LLP GHPATAWTLSLL RCH+ AGEAVTAEGLFRAALD L G+AEE DD IA+ QRSAG VA P+LFASPLHP +KAA LRGYSELL+QWEKREAEGEV ARQAE VESSLLLKPP +T+HMLHLDD Y Sbjct: 17 SSSDQAAEANAQLESLHEVSTAVDLAALGRRTEAASLLERAVEICSGSMGEDCALTRAAVHRLAQVLYDDQRFGAAEAILRKGESNARKQFPTELLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQVLSGEEDDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEACATTSESDEHK---EPTAXXXXXXXXXGGXXNDAAASAATSKVARLAHASVLSTAAQGELVLERGTATASERLGEALKIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEEVDDGIARRQRSAGTVALPLLFASPLHPHTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPVGLTLHMLHLDDVY 427
BLAST of mRNA_L-elsbetiae_contig77.16634.1 vs. uniprot
Match: A0A835ZDH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH7_9STRA) HSP 1 Score: 158 bits (399), Expect = 9.630e-40 Identity = 137/381 (35.96%), Postives = 187/381 (49.08%), Query Frame = 1 Query: 223 MGPDSALTRAAMHRLALVLYDDQRFGAAEAALTRGLSSAHN-----RFSTELLLLSKAQLFQGKVVSAVDTCSQAVDLCQQDEDN-TPDTDALGQALRQLGATQVLQGAEDDAETSLLRAARLGSTSADQGKGLAALAAFNIARGDEQSVEEAVDLLNEACATTKDTEEEEGEDTETAEGNVPLDVGAGVNGDAAAAFAA------QLAHASVLCTSAQGELILGRG------------TATASDRLGEALRIREKLLPAGHPATAWTLSLLGRCHLVAGEAVTAEGLFRAALDGLPGVAEEADDIAKSQRSAGVVAPPVLFASPLHPFSKAAMLRGYSELLMQWEKREAEGEVTARQAETVESSLLLKPPGEITMHMLHL 1293 MG ++ LT+AA RL L LY R AEAA+ + + + +LL+++AQLFQGK+ +A TC+ AV C+ TPDT ALG ALR LG Q+L+G D AETSLLRAARL +ADQ K A +AR V L+ A + E EG + V + AAA+ A Q HA L A+ L G T S L EAL++ E+ + P W L+ L RC +AG AVTAEGLFR+A++ + + +D+ Q A + SP + F L YS+LL+QWEKREA G ++A+ +E+ L LK P +++ MLHL Sbjct: 1 MGKEALLTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVGAVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQLLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARV------LVVCALSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAAASACAKTKRELQETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKM-----DPEDVRGKQALA-------MHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHL 363 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig77.16634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig77.16634.1 >prot_L-elsbetiae_contig77.16634.1 ID=prot_L-elsbetiae_contig77.16634.1|Name=mRNA_L-elsbetiae_contig77.16634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=433bp MMQRTTMLLGTRQTRVRAAHRGLSSSDQAAETNAQLASLHEVSAAADLAAback to top mRNA from alignment at L-elsbetiae_contig77:27610..31293+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig77.16634.1 ID=mRNA_L-elsbetiae_contig77.16634.1|Name=mRNA_L-elsbetiae_contig77.16634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3684bp|location=Sequence derived from alignment at L-elsbetiae_contig77:27610..31293+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig77:27610..31293+ >mRNA_L-elsbetiae_contig77.16634.1 ID=mRNA_L-elsbetiae_contig77.16634.1|Name=mRNA_L-elsbetiae_contig77.16634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2598bp|location=Sequence derived from alignment at L-elsbetiae_contig77:27610..31293+ (Laminarionema elsbetiae ELsaHSoW15)back to top |