mRNA_L-elsbetiae_contig7694.16629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7694.16629.1
Unique NamemRNA_L-elsbetiae_contig7694.16629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7694.16629.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.220e-12
Identity = 53/103 (51.46%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   73 PSVGK---CDGLDLPSDLLLRVKTGGIAAHGGGSLETKEMEQQAAALG----GRWGAIVEARDVPRSDNFRLVALDEDEGGVGGDSGHAGSKAHAAESAKKSL 360
            PS G+    DGL+LPSDLLLRVK+GG+       LE +E             GR  A  +A D  RSDNFRLV LDED+GGV  D     SKAHAAESAK  L
Sbjct:   90 PSSGEGEPADGLELPSDLLLRVKSGGLQRMEADVLEAEEQAXXXXXXXXXXXGRRKARAKAGDASRSDNFRLVVLDEDDGGVDADDE---SKAHAAESAKNFL 189
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7694.16629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIC2_ECTSI2.220e-1251.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7694contigL-elsbetiae_contig7694:2470..4235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1206
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7694.16629.1prot_L-elsbetiae_contig7694.16629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7694 3278..4235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.342334-UTR-L-elsbetiae_contig7694:2469..32771622816854.342334-UTR-L-elsbetiae_contig7694:2469..3277Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7694 2470..3277 -
1691683863.4778457-UTR-L-elsbetiae_contig7694:2469..32771691683863.4778457-UTR-L-elsbetiae_contig7694:2469..3277Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7694 2470..3277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.3537881-CDS-L-elsbetiae_contig7694:3277..34221622816854.3537881-CDS-L-elsbetiae_contig7694:3277..3422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7694 3278..3422 -
1691683863.4932227-CDS-L-elsbetiae_contig7694:3277..34221691683863.4932227-CDS-L-elsbetiae_contig7694:3277..3422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7694 3278..3422 -
1622816854.3641117-CDS-L-elsbetiae_contig7694:3984..42351622816854.3641117-CDS-L-elsbetiae_contig7694:3984..4235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7694 3985..4235 -
1691683863.5062225-CDS-L-elsbetiae_contig7694:3984..42351691683863.5062225-CDS-L-elsbetiae_contig7694:3984..4235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7694 3985..4235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7694.16629.1

>prot_L-elsbetiae_contig7694.16629.1 ID=prot_L-elsbetiae_contig7694.16629.1|Name=mRNA_L-elsbetiae_contig7694.16629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
SSSSGNDNSGSAAFEAGGVVEHGGPSVGKCDGLDLPSDLLLRVKTGGIAA
HGGGSLETKEMEQQAAALGGRWGAIVEARDVPRSDNFRLVALDEDEGGVG
GDSGHAGSKAHAAESAKKSLSARPNGEPQAR*
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mRNA from alignment at L-elsbetiae_contig7694:2470..4235-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7694.16629.1 ID=mRNA_L-elsbetiae_contig7694.16629.1|Name=mRNA_L-elsbetiae_contig7694.16629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1766bp|location=Sequence derived from alignment at L-elsbetiae_contig7694:2470..4235- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGCAGCGGCAACGACAACAGCGGAAGCGCCGCTTTTGAAGCCGG
TGGTGTAGTAGAGCACGGCGGGCCATCCGTTGGGAAGTGCGACGGGCTCG
ATTTGCCCTCGGACCTTCTGCTGAGAGTCAAGACGGGGGGGATTGCAGCG
CATGGAGGCGGAAGTTTGGAGACCAAGGAGATGGAGCAGCAGGCGGCGGC
ATTAGGTGGAAGATGGGGGGCGATAGTTGAGGCACGGGATGTTCCAAGAA
GGTAGGGGTACCGGTTGGGTGGCTGTGCTTGGGGGGAGGACGGATTGTCT
TGATATGAGGGTCTTGGGCTTCGATATCTTGCTTTCTGTGCGATGGCGTA
CATCCTGACTCTTTCCTCTGACAAGCCGCCGCCGACTTTTTCAGGAATTG
TTGCTCGAACAAAGAAGTAAATAGGTTGAAAGCATCAGCTAGAAGCCCGT
TTGCCCTGAATGTTTTTTTTTTTTTGTCTGCCCATTATTGGATTTTTGTC
GCCTGCCCCTCTGGCCCCCATCCTCCACTTCTACTCTAGCCATACGACCC
AACCGGGGTCACATAGGAGGGGGAGGTTGGCCCTCCTGTGTCTGTTTGTG
TCTGTTGGTCGTCAGTGTACCACTTCCCACCAGCCGTTACACCTTATGTA
CATACATGCATGTATTTCTTGGTTTTGCTGTTTTCCATCTTTCCATTTCT
GTATACGAATATTTGAAAGTACATTCCACCCTTTCTCGCTGCCAACCACG
TCTACCCGCCGTGTGTTTGGTTCGTGAACCGTTCGATCACCCATCGGCCT
CTTGTTGCCGTAGTGATAACTTCCGATTGGTGGCATTGGACGAAGATGAA
GGGGGTGTTGGAGGTGACAGTGGCCATGCTGGGAGCAAGGCACACGCCGC
CGAGAGCGCCAAGAAGAGCCTTTCTGCGCGACCGAACGGGGAGCCGCAAG
CGCGTTAGCCACAGCTCGTTCAAGGCTCGGAAGCCCTTTGGCCCGTCGCC
GAACTTCTGATGGTTGGTCTGGATTGGGCTAGCCGTCGGCCAGTGTGGCT
GGGTCTATCTTGGCTGCTGTATCTCGCGGTCGCATTCCGCTGCTGCCTCT
GGTGTTCTGTTACGCTCTTTTGTAGATGCATGTGTTTGTGTGTGTTTGTG
TGTTTGAATTGGTTTGCGAGGCTGTTTCCGAGCCACTCCTCCCGCTGCTT
GCCGGCAACGCCGCGTACCAGCGCACGATGGCAATGGTATCTTATAGCAT
AGGTAATTCTCGTGCTCTCGGCGGTGATTTTTCAGAGTCTCTAAACGCTA
GTGCCACTGCTACGGCTACGTACGCCCGGTTTGTAGTCGACTCGGTGTCC
CGTGTGGTCTTCGCTTCGACTACCTGGGAACTTTCAATGTTGATATCCAC
TTCGAGCTGATCCTAAGTTTTCATGGAGAGAACCGGGTTTCCTCTTACCG
GTGGCCTGTGAATTATACACACGTGGCCTGTCGCGTGAGGTGCGTCGGGG
CTCCGTTATTGTAGGTGGCCAAATTGTAGAGTTGTCTCTCGTCTGGGAAA
TTCCCGGGTACCCGTCACACGGTCCCGGGTACTTCCGTTCCCATCCGGAA
CACTGTCCAGTACCCGGGTAATCCTGAGACAGGGTACCCTTTTTCGATAC
ACGGCGCCCCAGAGAACTTTGAATTTACACACGCCTCTACGCCTACCTGC
AAGCAACCCACGAGCAACAGCTAGTCACTGTGCGTGGGGCTGTCGCATCG
GGTGTCCTCGACAACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7694:2470..4235-

>mRNA_L-elsbetiae_contig7694.16629.1 ID=mRNA_L-elsbetiae_contig7694.16629.1|Name=mRNA_L-elsbetiae_contig7694.16629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig7694:2470..4235- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGCAGCGGCAACGACAACAGCGGAAGCGCCGCTTTTGAAGCCGG
TGGTGTAGTAGAGCACGGCGGGCCATCCGTTGGGAAGTGCGACGGGCTCG
ATTTGCCCTCGGACCTTCTGCTGAGAGTCAAGACGGGGGGGATTGCAGCG
CATGGAGGCGGAAGTTTGGAGACCAAGGAGATGGAGCAGCAGGCGGCGGC
ATTAGGTGGAAGATGGGGGGCGATAGTTGAGGCACGGGATGTTCCAAGAA
GAGCAGCAGCAGCGGCAACGACAACAGCGGAAGCGCCGCTTTTGAAGCCG
GTGGTGTAGTAGAGCACGGCGGGCCATCCGTTGGGAAGTGCGACGGGCTC
GATTTGCCCTCGGACCTTCTGCTGAGAGTCAAGACGGGGGGGATTGCAGC
GCATGGAGGCGGAAGTTTGGAGACCAAGGAGATGGAGCAGCAGGCGGCGG
CATTAGGTGGAAGATGGGGGGCGATAGTTGAGGCACGGGATGTTCCAAGA
AGTGATAACTTCCGATTGGTGGCATTGGACGAAGATGAAGGGGGTGTTGG
AGGTGACAGTGGCCATGCTGGGAGCAAGGCACACGCCGCCGAGAGCGCCA
AGAAGAGCCTTTCTGCGCGACCGAACGGGGAGCCGCAAGCGCGTTAGTGA
TAACTTCCGATTGGTGGCATTGGACGAAGATGAAGGGGGTGTTGGAGGTG
ACAGTGGCCATGCTGGGAGCAAGGCACACGCCGCCGAGAGCGCCAAGAAG
AGCCTTTCTGCGCGACCGAACGGGGAGCCGCAAGCGCGTTAG
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