mRNA_L-elsbetiae_contig7690.16625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7690.16625.1
Unique NamemRNA_L-elsbetiae_contig7690.16625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7690.16625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7690contigL-elsbetiae_contig7690:7676..8200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.992383-CDS-L-elsbetiae_contig7690:7675..77221622816853.992383-CDS-L-elsbetiae_contig7690:7675..7722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 7676..7722 +
1691683863.2300298-CDS-L-elsbetiae_contig7690:7675..77221691683863.2300298-CDS-L-elsbetiae_contig7690:7675..7722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 7676..7722 +
1622816854.0038025-CDS-L-elsbetiae_contig7690:7958..81991622816854.0038025-CDS-L-elsbetiae_contig7690:7958..8199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 7959..8199 +
1691683863.2483385-CDS-L-elsbetiae_contig7690:7958..81991691683863.2483385-CDS-L-elsbetiae_contig7690:7958..8199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7690 7959..8199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7690.16625.1prot_L-elsbetiae_contig7690.16625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7690 7676..8199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7690.16625.1

>prot_L-elsbetiae_contig7690.16625.1 ID=prot_L-elsbetiae_contig7690.16625.1|Name=mRNA_L-elsbetiae_contig7690.16625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
PVLSPPPCPPLPRRRCVPGRRSSSGCGSGPLAGASSCSSRCRRSHSRSRP
RRSSRDRCRGRRSEPRSRRRCRLRPRLLRPGSELLFRRRRWLLPYR
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mRNA from alignment at L-elsbetiae_contig7690:7676..8200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7690.16625.1 ID=mRNA_L-elsbetiae_contig7690.16625.1|Name=mRNA_L-elsbetiae_contig7690.16625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=525bp|location=Sequence derived from alignment at L-elsbetiae_contig7690:7676..8200+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTCCTTTCGCCCCCGCCGTGCCCTCCTCTCCCGCGGCGGCGGTGGCG
GCGGCAGGCCCCGAAGGGCCATCAGCCGAAGCCCTCCTGTCGGATGGCGA
CGGCAACTGCCGGGCCGTGCCTCGGTCCCGGCCACCACCGACGCGCGGCG
AGTCTACGGCCCCGAACTCGCGATCGTCTATCGAGACCTGCGACGCCGCC
GCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCGCGGCAGCATCTACGGC
GGCGCTGACGGCCGCGGCGTCTTGCACGGTGAGCGTTCCCGGAAGAAGGA
GCTCCTCCGGCTGCGGATCGGGTCCCCTGGCCGGGGCTTCTTCTTGCTCC
AGCCGCTGCCGCCGCTCCCACTCCCGCTCCCGCCCCCGCCGCTCCTCCCG
CGACCGCTGCCGCGGGAGGAGGTCCGAGCCGCGCTCCCGGCGCCGGTGCC
GCTTGCGCCCTCGGCTCTTGCGGCCGGGGTCCGAGCTTCTCTTCCGCCGC
CGGCGTTGGTTGCTGCCGTATCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7690:7676..8200+

>mRNA_L-elsbetiae_contig7690.16625.1 ID=mRNA_L-elsbetiae_contig7690.16625.1|Name=mRNA_L-elsbetiae_contig7690.16625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig7690:7676..8200+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTCCTTTCGCCCCCGCCGTGCCCTCCTCTCCCGCGGCGGCGGTGCCC
GTCCTTTCGCCCCCGCCGTGCCCTCCTCTCCCGCGGCGGCGGTGCGTTCC
CGGAAGAAGGAGCTCCTCCGGCTGCGGATCGGGTCCCCTGGCCGGGGCTT
CTTCTTGCTCCAGCCGCTGCCGCCGCTCCCACTCCCGCTCCCGCCCCCGC
CGCTCCTCCCGCGACCGCTGCCGCGGGAGGAGGTCCGAGCCGCGCTCCCG
GCGCCGGTGCCGCTTGCGCCCTCGGCTCTTGCGGCCGGGGTCCGAGCTTC
TCTTCCGCCGCCGGCGTTGGTTGCTGCCGTATCGGCGTTCCCGGAAGAAG
GAGCTCCTCCGGCTGCGGATCGGGTCCCCTGGCCGGGGCTTCTTCTTGCT
CCAGCCGCTGCCGCCGCTCCCACTCCCGCTCCCGCCCCCGCCGCTCCTCC
CGCGACCGCTGCCGCGGGAGGAGGTCCGAGCCGCGCTCCCGGCGCCGGTG
CCGCTTGCGCCCTCGGCTCTTGCGGCCGGGGTCCGAGCTTCTCTTCCGCC
GCCGGCGTTGGTTGCTGCCGTATCGG
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