mRNA_L-elsbetiae_contig7688.16622.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5JBV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV2_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 9.350e-12 Identity = 54/129 (41.86%), Postives = 66/129 (51.16%), Query Frame = 1 Query: 34 GRSAPPADRFVSLDEPSPADGKVDREITSRIRRAI-CFRRHDEAMYDRRRIDRRLKA-----------GPSKPVQTGCEENYTRGRHRAHDKARETHSSLGLRTEDDRLRKRVLLGTMAQGQGLSGRAE 384 G++ DRFV L ADGK DREITSR RA C+RR+ +MYDRRR DR+LK + +Q CEE K R + +R ED+RL KR+LLG MA G G G E Sbjct: 709 GQTYKQRDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLPQAETALSYAQALIIQADCEETIKA----TVRKQRLCFAGFVMRMEDNRLPKRMLLGAMAGGGGYRGGQE 833
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5JUJ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ6_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.570e-10 Identity = 63/170 (37.06%), Postives = 82/170 (48.24%), Query Frame = 1 Query: 34 GRSAPPADRFVSLDEPSPADGKVDREITSRIRRAI-CFRRHDEAMYDRRRIDRRLKAG--PSKPVQT---GCE------ENYTR--GRHR-------------------AHD-----------------KARETHSSLGLRTEDDRLRKRVLLGTMAQGQGLSGRAEERV 393 G++ DRFV L ADGK DREITSR RA C+RR+ +MYDRRR DR+L+ ++ V+T GC E YT+ G HR +H K R + +R ED+RL KR+LLG MA G+G+ GRA ER+ Sbjct: 162 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLQIRLLQAQVVETLLYGCASWSLTAERYTKLNGTHRQFLTWCIGWSKRKRSDRPMSHAPALIQAGCEETIEATVRKRRLCFAGFVIRMEDNRLPKRMLLGAMAGGRGIPGRAGERL 331
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 3.100e-10 Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574 G+RGGQ+S+ WV+R G L V G +++ + G W + ++EDG AWFM KWH +EAEASAKRQ ARGAEA Sbjct: 411 GYRGGQESD-WVYRLGEDL--VAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRARGAEA 486
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L6H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H8_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 4.870e-10 Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 2 Query: 365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKG-------KVGEWFRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEAASIA 586 G+RGGQ+S+ WV R G L G K+G K E + +VEDG AWFM KWH +E EASAKRQ AR AEA S A Sbjct: 22 GYRGGQESD-WVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKWHMQEKEASAKRQRAREAEAESTA 101
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L863_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L863_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.190e-9 Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574 G+RGGQ+S+ WV R G L G K+G G+W + +VEDG AWFM +WH +EAEASAKRQ AR AEA Sbjct: 20 GYRGGQESD-WVSRLGEDLVAFNMGDEKEG--GKWKESAKDPEVWCNKVEDGAAWFMRRWHRQEAEASAKRQRAREAEA 95
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 1.390e-9 Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 2 Query: 365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKG-------KVGEWFRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEAASIA 586 G+RGGQ+S+ WV R G L G K+G K E + +VEDG AWFM KWH +EAEASAKRQ AR AE S A Sbjct: 101 GYRGGQESD-WVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEVESTA 180
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L3I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I2_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 2.070e-9 Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 2 Query: 365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEAASIA 586 G+RGGQ+S+ WV R G L G K+G GEW + +VED AW M KWH +EAEASAKRQ R AEAA +A Sbjct: 6 GYRGGQESD-WVSRLGEDLVAFNMGDEKEG--GEWKDSAKDPEVWYNKVEDVAAWLMRKWHRQEAEASAKRQRMRAAEAALVA 85
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L3X1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X1_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 3.770e-9 Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 365 GFRGGQKSE*WVFRPGRRLCGVWHGRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574 G+RGGQ+S+ WV+R G L V G +++ + G W + ++EDG AWFM KWH +EAEAS KRQ AR AEA Sbjct: 144 GYRGGQESD-WVYRLGEDL--VAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHKQEAEASTKRQRAREAEA 219
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L6D4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D4_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 3.910e-9 Identity = 49/118 (41.53%), Postives = 57/118 (48.31%), Query Frame = 1 Query: 34 GRSAPPADRFVSLDEPSPADGKVDREITSRIRRAI-CFRRHDEAMYDRRRIDRRLKAGPSKPVQTGCEENYTRGRHRAHDKARETHSSLGLRTEDDRLRKRVLLGTMAQGQGLSGRAE 384 G++ DRFV L ADGK DREITSR RA C+RR+ MYDRRR +R CEE K R + +R D RL KR+LLG MA G G G E Sbjct: 61 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNIALMYDRRRANR-------------CEETIEA----TVRKRRLCFAGFVMRMGDSRLPKRMLLGAMAGGMGYRGGQE 161
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Match: A0A6H5L172_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L172_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 4.440e-9 Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 365 GFRGGQKSE*WVFRPGRRLCGVWH-GRRKKGKVGEW---------FRQRVEDGVAWFMGKWHAREAEASAKRQFARGAEA 574 G+RGGQ+S+ WV R G L ++ G K+G G+W + +VEDG AWFM KWH +EAEASAKRQ AR AEA Sbjct: 90 GYRGGQESD-WVSRLGEDLVAFFNMGDEKEG--GKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEA 166 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7688.16622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7688.16622.1 >prot_L-elsbetiae_contig7688.16622.1 ID=prot_L-elsbetiae_contig7688.16622.1|Name=mRNA_L-elsbetiae_contig7688.16622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp CPAITGLYRKKGRSAPPADRFVSLDEPSPADGKVDREITSRIRRAICFRRback to top mRNA from alignment at L-elsbetiae_contig7688:2123..2931- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7688.16622.1 ID=mRNA_L-elsbetiae_contig7688.16622.1|Name=mRNA_L-elsbetiae_contig7688.16622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=809bp|location=Sequence derived from alignment at L-elsbetiae_contig7688:2123..2931- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7688:2123..2931- >mRNA_L-elsbetiae_contig7688.16622.1 ID=mRNA_L-elsbetiae_contig7688.16622.1|Name=mRNA_L-elsbetiae_contig7688.16622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig7688:2123..2931- (Laminarionema elsbetiae ELsaHSoW15)back to top |