mRNA_L-elsbetiae_contig7680.16615.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7680.16615.1
Unique NamemRNA_L-elsbetiae_contig7680.16615.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: A0A8F0FDH6_9PHAE (Ribosomal protein S14 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FDH6_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.070e-55
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            MK LD KRR SFAI+EAKRKALQAVATNQNLE+SLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSV+ FYKLSRLQFRRLASKG LPGLRKACW
Sbjct:    1 MKSLDYKRRQSFAIYEAKRKALQAVATNQNLEISLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVLSFYKLSRLQFRRLASKGALPGLRKACW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: A0A3G5FPN0_9PHAE (Ribosomal protein S14 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPN0_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.940e-53
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            MK+LDLKRR SFA++E+KRKALQAVATNQNL++SLRWWAQLEKSKLPRQ SLSRVHNHCVET RSRSV+ FYKLSRLQFRRLASKG L GLRKACW
Sbjct:    1 MKKLDLKRRQSFAVYESKRKALQAVATNQNLDISLRWWAQLEKSKLPRQGSLSRVHNHCVETTRSRSVVSFYKLSRLQFRRLASKGALSGLRKACW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: Q2TUD9_9PHAE (Ribosomal protein S14 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD9_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 9.860e-52
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            M+ LDLKRR SFAI+EAKRKALQAVATNQ+L++SLRWWAQLEKSKLPRQSSLSRVHNHCVET RSRSVI FYKLSRLQFRRLASKG   GLRK+CW
Sbjct:    1 MRSLDLKRRQSFAIYEAKRKALQAVATNQHLDISLRWWAQLEKSKLPRQSSLSRVHNHCVETGRSRSVISFYKLSRLQFRRLASKGSFSGLRKSCW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: A0A8F0FD37_9PHAE (Ribosomal protein S14 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD37_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.990e-51
Identity = 79/96 (82.29%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            MK+LDLKRR SFA+FE+KRKALQAV TNQNL+VSLRWWAQ+EKSK+PRQSSL RVHNHCVET RSRSV+ FYKLSRL+FRRLASKG LPG+R++CW
Sbjct:    1 MKKLDLKRRQSFALFESKRKALQAVVTNQNLDVSLRWWAQIEKSKMPRQSSLCRVHNHCVETGRSRSVLSFYKLSRLEFRRLASKGSLPGVRRSCW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: A0A8F0FC95_9PHAE (Ribosomal protein S14 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC95_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 8.110e-51
Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            M++ D KRR SFA++EAKRKALQAVATNQNL +SLRWWAQLEKSKLPR+SSL RVHNHCVET RSRSVI FYKLSRLQFRRLASKG L GLRKACW
Sbjct:    1 MRKFDYKRRQSFALYEAKRKALQAVATNQNLNISLRWWAQLEKSKLPRKSSLCRVHNHCVETGRSRSVINFYKLSRLQFRRLASKGALAGLRKACW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: A0A089PB03_PETFA (Ribosomal protein S14 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089PB03_PETFA)

HSP 1 Score: 163 bits (413), Expect = 1.150e-50
Identity = 80/96 (83.33%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            MK LD KRR  F+++E+KRK LQ+VATNQNL+VSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYK+SRLQ RRLASKG L G+RKACW
Sbjct:    1 MKSLDYKRRQYFSLYESKRKVLQSVATNQNLDVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKMSRLQLRRLASKGALSGIRKACW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: A0A3Q8QZ17_9PHAE (Ribosomal protein S14 n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A3Q8QZ17_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.150e-50
Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            M+ LD KRR SF ++E+KRK LQ+VATNQNL++SLRWWAQLEKSKLPRQSSLSRVHNHC+ETNRSRSVIGFYK+SRLQ RRLASKG +PG+RKACW
Sbjct:    1 MRNLDYKRRRSFFLYESKRKVLQSVATNQNLDISLRWWAQLEKSKLPRQSSLSRVHNHCMETNRSRSVIGFYKMSRLQLRRLASKGSIPGVRKACW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: V9PAI8_UNDPI (Ribosomal protein S14 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PAI8_UNDPI)

HSP 1 Score: 162 bits (411), Expect = 2.330e-50
Identity = 77/96 (80.21%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            M+ +D KRR SFA++E++RKALQAVATNQNLEVSLRWWAQLEKS+LPRQSSLSRVHNHC++TNRSRS+I FYKLSRLQF+RL SKG  PG RKACW
Sbjct:    1 MRSIDYKRRQSFALYESRRKALQAVATNQNLEVSLRWWAQLEKSQLPRQSSLSRVHNHCIDTNRSRSIISFYKLSRLQFKRLVSKGSFPGFRKACW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: S4S3S6_LAMHY (Ribosomal protein S14 n=45 Tax=Laminariales TaxID=2886 RepID=S4S3S6_LAMHY)

HSP 1 Score: 162 bits (409), Expect = 4.690e-50
Identity = 78/96 (81.25%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            M+ +D KRR SFA++E++RKALQA+A NQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHC++TNRSRSV+ FYKLSRLQFRRLASKG   GLRKACW
Sbjct:    1 MRGMDYKRRKSFALYESRRKALQAIAMNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCIDTNRSRSVLSFYKLSRLQFRRLASKGSFSGLRKACW 96
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Match: Q94YZ0_PYLLI (Ribosomal protein S14 n=2 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94YZ0_PYLLI)

HSP 1 Score: 161 bits (408), Expect = 6.670e-50
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW 288
            M R D KRR SFA+ EAKRKA+Q++A+NQNL+VSLRWWAQLEKSKLPRQSSLSR HNHCVETNRSRSVI FYK+SRL FRRLASKG LPGLRKACW
Sbjct:    1 MIRSDYKRRQSFALNEAKRKAIQSIASNQNLDVSLRWWAQLEKSKLPRQSSLSRAHNHCVETNRSRSVISFYKISRLHFRRLASKGVLPGLRKACW 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7680.16615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FDH6_9PHAE1.070e-5591.67Ribosomal protein S14 n=2 Tax=Laminariales TaxID=2... [more]
A0A3G5FPN0_9PHAE2.940e-5386.46Ribosomal protein S14 n=1 Tax=Cladosiphon okamuran... [more]
Q2TUD9_9PHAE9.860e-5286.46Ribosomal protein S14 n=2 Tax=Desmarestia TaxID=31... [more]
A0A8F0FD37_9PHAE1.990e-5182.29Ribosomal protein S14 n=1 Tax=Analipus japonicus T... [more]
A0A8F0FC95_9PHAE8.110e-5184.38Ribosomal protein S14 n=1 Tax=Chorda asiatica TaxI... [more]
A0A089PB03_PETFA1.150e-5083.33Ribosomal protein S14 n=1 Tax=Petalonia fascia Tax... [more]
A0A3Q8QZ17_9PHAE1.150e-5081.25Ribosomal protein S14 n=3 Tax=Scytosiphonaceae Tax... [more]
V9PAI8_UNDPI2.330e-5080.21Ribosomal protein S14 n=1 Tax=Undaria pinnatifida ... [more]
S4S3S6_LAMHY4.690e-5081.25Ribosomal protein S14 n=45 Tax=Laminariales TaxID=... [more]
Q94YZ0_PYLLI6.670e-5083.33Ribosomal protein S14 n=2 Tax=Pylaiella littoralis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7680contigL-elsbetiae_contig7680:3517..3807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue8.2e-13
Seed eggNOG ortholog349521.HCH_06204
Preferred namerpsN
KEGG koko:K02954
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorymitochondrion
GOsGO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
EggNOG OGs1MZDT@1224,1S62N@1236,1XKDP@135619,COG0199@1,COG0199@2
COG Functional cat.J
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.2903316-CDS-L-elsbetiae_contig7680:3516..38071622816853.2903316-CDS-L-elsbetiae_contig7680:3516..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 3517..3807 +
1691683862.754786-CDS-L-elsbetiae_contig7680:3516..38071691683862.754786-CDS-L-elsbetiae_contig7680:3516..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 3517..3807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7680.16615.1prot_L-elsbetiae_contig7680.16615.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7680 3517..3807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7680.16615.1

>prot_L-elsbetiae_contig7680.16615.1 ID=prot_L-elsbetiae_contig7680.16615.1|Name=mRNA_L-elsbetiae_contig7680.16615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MKRLDLKRRSSFAIFEAKRKALQAVATNQNLEVSLRWWAQLEKSKLPRQS
SLSRVHNHCVETNRSRSVIGFYKLSRLQFRRLASKGCLPGLRKACW*
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mRNA from alignment at L-elsbetiae_contig7680:3517..3807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7680.16615.1 ID=mRNA_L-elsbetiae_contig7680.16615.1|Name=mRNA_L-elsbetiae_contig7680.16615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:3517..3807+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAGACTTGATTTAAAACGTCGTAGTTCGTTTGCTATTTTTGAAGC
TAAGCGTAAAGCTCTTCAAGCTGTTGCAACTAATCAAAATTTGGAAGTTT
CTTTACGTTGGTGGGCTCAACTTGAAAAGTCTAAGTTACCTCGACAAAGT
AGCTTAAGTAGAGTTCATAATCATTGTGTAGAGACAAATAGGTCTCGTTC
GGTTATAGGTTTTTATAAACTTTCTAGACTTCAATTTCGTAGGTTAGCAT
CCAAAGGTTGTTTACCAGGTTTACGAAAAGCTTGTTGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7680:3517..3807+

>mRNA_L-elsbetiae_contig7680.16615.1 ID=mRNA_L-elsbetiae_contig7680.16615.1|Name=mRNA_L-elsbetiae_contig7680.16615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:3517..3807+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAGACTTGATTTAAAACGTCGTAGTTCGTTTGCTATTTTTGAAGC
TAAGCGTAAAGCTCTTCAAGCTGTTGCAACTAATCAAAATTTGGAAGTTT
CTTTACGTTGGTGGGCTCAACTTGAAAAGTCTAAGTTACCTCGACAAAGT
AGCTTAAGTAGAGTTCATAATCATTGTGTAGAGACAAATAGGTCTCGTTC
GGTTATAGGTTTTTATAAACTTTCTAGACTTCAATTTCGTAGGTTAGCAT
CCAAAGGTTGTTTACCAGGTTTACGAAAAGCTTGTTGGTAAATGAAAAGA
CTTGATTTAAAACGTCGTAGTTCGTTTGCTATTTTTGAAGCTAAGCGTAA
AGCTCTTCAAGCTGTTGCAACTAATCAAAATTTGGAAGTTTCTTTACGTT
GGTGGGCTCAACTTGAAAAGTCTAAGTTACCTCGACAAAGTAGCTTAAGT
AGAGTTCATAATCATTGTGTAGAGACAAATAGGTCTCGTTCGGTTATAGG
TTTTTATAAACTTTCTAGACTTCAATTTCGTAGGTTAGCATCCAAAGGTT
GTTTACCAGGTTTACGAAAAGCTTGTTGGTAA
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