mRNA_L-elsbetiae_contig7680.16614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7680.16614.1
Unique NamemRNA_L-elsbetiae_contig7680.16614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: E6ZET3_ECTSI (NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales TaxID=2877 RepID=E6ZET3_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 3.580e-141
Identity = 191/202 (94.55%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 LLSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGWLK 606
            +L+ISINDL+VWV+KGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFN+GSDRGRFLFFKNSLGDTFWG LIKTVLRRCI+CTRCVRYTHQIGG DLIGTSNRGGHSEIGM+KESVLKTETSGGVIELCPV W+K
Sbjct:    1 MLTISINDLIVWVRKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNYGSDRGRFLFFKNSLGDTFWGSLIKTVLRRCILCTRCVRYTHQIGGKDLIGTSNRGGHSEIGMFKESVLKTETSGGVIELCPVCWIK 202
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: Q9XNR7_PYLLI (NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales TaxID=2877 RepID=Q9XNR7_PYLLI)

HSP 1 Score: 400 bits (1028), Expect = 1.620e-140
Identity = 187/205 (91.22%), Postives = 198/205 (96.59%), Query Frame = 1 
Query:    1 LLSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGWLKTRK 615
            +L+IS+NDL++W+KKGSTVIQACQ AGAQVPRFCYHDKLF+AGNCRMCLVEVSKSPKPQASCALPFLP LRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRF FFKNSLGDTFWG LIKTVLRRC+VCTRCVRYTHQIGGSDLIGTSNRGGHSEIGM+KE+ LKTETSGGVIELCPVGWL  +K
Sbjct:    1 MLTISVNDLVIWLKKGSTVIQACQVAGAQVPRFCYHDKLFIAGNCRMCLVEVSKSPKPQASCALPFLPGLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFFFFKNSLGDTFWGSLIKTVLRRCVVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMFKENTLKTETSGGVIELCPVGWLSKKK 205
[Close]
BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: F8UWN5_9PHAE (NADH dehydrogenase subunit 11 n=73 Tax=Phaeophyceae TaxID=2870 RepID=F8UWN5_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 2.060e-138
Identity = 186/204 (91.18%), Postives = 196/204 (96.08%), Query Frame = 1 
Query:    1 LLSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGWLKTR 612
            +L+ISIN+LL+WVKKGSTVIQACQAAGA +PRFCYHDKLF+AGNCRMCLVEVS SPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSL DTFWGGLIKTVLRRCIVCTRCVRYTHQIGG+D +GTSNRGGHSEIGM+KESVLK+ETSGGVIELCPV W   R
Sbjct:    1 MLNISINELLIWVKKGSTVIQACQAAGANIPRFCYHDKLFIAGNCRMCLVEVSNSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLSDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGNDSLGTSNRGGHSEIGMFKESVLKSETSGGVIELCPVSWYNPR 204
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: A0A8F0K0N1_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K0N1_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 2.040e-131
Identity = 175/200 (87.50%), Postives = 192/200 (96.00%), Query Frame = 1 
Query:    1 LLSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGW 600
            +++ISIN+LLVWVKKGSTVIQACQAAGA++PRFCYHDKLFVAGNCRMCLVEV+ +PKPQASCALPF+PNL+IFTN+ALVRKAQE VMEL+LLHHPLDCPVCDQGGECELQEQSFNFGSDRGRF FFKNSLGDTFWG LIKTVLRRCIVCTRCVRYT QIGG+D +GTSNRG HSEIGM+KE++LKTETSGGVIELCPV W
Sbjct:    1 MINISINELLVWVKKGSTVIQACQAAGAKIPRFCYHDKLFVAGNCRMCLVEVNNAPKPQASCALPFMPNLKIFTNSALVRKAQEFVMELMLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFFFFKNSLGDTFWGSLIKTVLRRCIVCTRCVRYTSQIGGNDSVGTSNRGSHSEIGMFKENILKTETSGGVIELCPVCW 200
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: A0A2R4QQ95_9PHAE (NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ95_9PHAE)

HSP 1 Score: 374 bits (961), Expect = 2.370e-130
Identity = 173/200 (86.50%), Postives = 190/200 (95.00%), Query Frame = 1 
Query:    1 LLSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGW 600
            +++ISIN+LL+WVKKGSTVIQACQ+AG ++PRFCYHDKLF+AGNCRMCLVEV  +PKPQASCALPF+PN+RI+TNTALVRKAQE VMELLLLHHPLDCPVCDQGGECELQEQSFN+GSDRGRF FFK SLGDTFWG LIKTVLRRCIVCTRCVRYT+QIGGS+ IGTSNRGG SEIGM+KESVLKTETSGGVIELCPV W
Sbjct:    1 MINISINELLIWVKKGSTVIQACQSAGVKIPRFCYHDKLFIAGNCRMCLVEVGNAPKPQASCALPFMPNMRIYTNTALVRKAQEFVMELLLLHHPLDCPVCDQGGECELQEQSFNYGSDRGRFFFFKKSLGDTFWGSLIKTVLRRCIVCTRCVRYTYQIGGSEAIGTSNRGGSSEIGMFKESVLKTETSGGVIELCPVAW 200
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: A0A0G2RLB7_TUROR (NADH dehydrogenase subunit 11 n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RLB7_TUROR)

HSP 1 Score: 369 bits (948), Expect = 2.120e-128
Identity = 171/200 (85.50%), Postives = 188/200 (94.00%), Query Frame = 1 
Query:    1 LLSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGW 600
            +++I+IN+LL+WVKKGSTVIQAC+AAG ++PRFCYHDKLF+AGNCRMCLVEV  SPKPQASCALPF+PN+RIFTNTALV KAQE VME LLLHHPLDCPVCDQGGECELQEQSFN+GSDRGRF FFK SLGDTFWG LIKTVLRRCIVCTRCVRYT  IGGSD+IGTSNRGG+SEIGM+KE+VLKTETSGGVIELCPV W
Sbjct:    1 MINITINELLIWVKKGSTVIQACEAAGVKIPRFCYHDKLFIAGNCRMCLVEVGNSPKPQASCALPFMPNMRIFTNTALVHKAQEFVMEFLLLHHPLDCPVCDQGGECELQEQSFNYGSDRGRFFFFKKSLGDTFWGSLIKTVLRRCIVCTRCVRYTSLIGGSDIIGTSNRGGNSEIGMFKENVLKTETSGGVIELCPVCW 200
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: A0A4Y5T8Q6_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Q6_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 9.040e-113
Identity = 150/199 (75.38%), Postives = 175/199 (87.94%), Query Frame = 1 
Query:    4 LSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGW 600
            + I IN+L+VWVKKGSTV+QAC+A G ++PRFCYH KLF+AGNCRMCLVEV  SPKPQ SCALPF+PN+ IFTN+ALV+KA+E VME LLL+HPLDCP+CDQGGEC+LQEQSF+FGSDRGRF F K+S+ DTFWG L+KTV+RRCIVCTRCVRYT  IGGS ++GT NRGG SEIG + E+ LKTE SGGVIELCPVGW
Sbjct:    1 MKIIINNLVVWVKKGSTVLQACEAVGEEIPRFCYHKKLFLAGNCRMCLVEVGNSPKPQVSCALPFVPNMSIFTNSALVKKAREGVMEFLLLNHPLDCPICDQGGECDLQEQSFHFGSDRGRFFFTKSSVVDTFWGSLVKTVMRRCIVCTRCVRYTELIGGSGVVGTVNRGGQSEIGTFVETSLKTEVSGGVIELCPVGW 199
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: A0A8E8U4G1_9PHAE (Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4G1_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 2.330e-112
Identity = 154/207 (74.40%), Postives = 179/207 (86.47%), Query Frame = 1 
Query:    1 LLSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGWLKTRKSL 621
            ++SI IN+++VWVK+GSTVIQACQA GA +PRFCYHDKL +AGNCRMCLVEV+ SPKPQASCALPFLP LRIFT +ALVRKAQE VMEL+LL+HPLDCP+CDQGGECELQEQSF++GSDRGRF F KNSLG   WG  IKTVLRRCI+CTRCVRYT QIGG D +G S+RG  SEI ++K SV+K+E SGGVI+LCPV W  T++ L
Sbjct:    1 MISIHINEIIVWVKRGSTVIQACQAVGAIIPRFCYHDKLSIAGNCRMCLVEVNNSPKPQASCALPFLPGLRIFTTSALVRKAQEFVMELILLNHPLDCPICDQGGECELQEQSFHYGSDRGRFFFPKNSLGGALWGSFIKTVLRRCILCTRCVRYTSQIGGIDALGVSSRGSQSEITIFKGSVVKSEISGGVIDLCPVCWSSTKEIL 207
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: Q2TUA0_DICDH (NADH dehydrogenase subunit 11 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUA0_DICDH)

HSP 1 Score: 323 bits (829), Expect = 2.470e-110
Identity = 144/199 (72.36%), Postives = 176/199 (88.44%), Query Frame = 1 
Query:    4 LSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGW 600
            + I+IN+L+VWVK GSTV+QAC+AAG +VPRFCYH+KL +AGNCRMCLVEV  SPKPQ SCALPF+PN+ IFT +ALVRKA+E VME +L++HPLDCP+CDQGGEC+LQEQSF+FGSDRGRF F KNS  DTFWG L+KTV++RCIVCTRCVRY+  +GG+ ++GT+NRG +SEIGM+ E+ LKTE SGGVI+LCPVGW
Sbjct:    1 MKITINNLVVWVKGGSTVLQACEAAGEEVPRFCYHEKLLIAGNCRMCLVEVGNSPKPQVSCALPFIPNMSIFTESALVRKAREGVMEFILVNHPLDCPICDQGGECDLQEQSFHFGSDRGRFFFLKNSSVDTFWGALVKTVMKRCIVCTRCVRYSDLVGGTGIVGTTNRGVNSEIGMFVETSLKTEVSGGVIDLCPVGW 199
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BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Match: A0A8F0FDA4_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDA4_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 2.840e-107
Identity = 142/200 (71.00%), Postives = 172/200 (86.00%), Query Frame = 1 
Query:    4 LSISINDLLVWVKKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPLDCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRCIVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELCPVGWL 603
            + I IN+L++WVKKGSTV+QAC+A G ++PRFCYH KLF+AGNCRMC VEV  SPKPQ SCALPFLPN+ I TN++LVRKA+ESV+E +LL+HPLDCPVCDQGGEC+LQEQ+F+FGSDRGRF F KNS+GDTFWG LIKT++RRCI+CTRC+RY   I G  L+G +NRGG+S IG + E+ L TE SGGVIELCPVGW+
Sbjct:    1 MKIIINNLIIWVKKGSTVLQACEAIGEKIPRFCYHKKLFIAGNCRMCFVEVGNSPKPQVSCALPFLPNMSILTNSSLVRKARESVLEFILLNHPLDCPVCDQGGECDLQEQNFHFGSDRGRFFFKKNSIGDTFWGLLIKTIMRRCILCTRCIRYLDLIAGFFLVGVTNRGGYSGIGTFIENFLGTEISGGVIELCPVGWV 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7680.16614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZET3_ECTSI3.580e-14194.55NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales... [more]
Q9XNR7_PYLLI1.620e-14091.22NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales... [more]
F8UWN5_9PHAE2.060e-13891.18NADH dehydrogenase subunit 11 n=73 Tax=Phaeophycea... [more]
A0A8F0K0N1_9PHAE2.040e-13187.50NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia ... [more]
A0A2R4QQ95_9PHAE2.370e-13086.50NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=... [more]
A0A0G2RLB7_TUROR2.120e-12885.50NADH dehydrogenase subunit 11 n=24 Tax=Sargassacea... [more]
A0A4Y5T8Q6_9PHAE9.040e-11375.38NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris... [more]
A0A8E8U4G1_9PHAE2.330e-11274.40Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
Q2TUA0_DICDH2.470e-11072.36NADH dehydrogenase subunit 11 n=1 Tax=Dictyota dic... [more]
A0A8F0FDA4_9PHAE2.840e-10771.00NADH dehydrogenase subunit 11 n=1 Tax=Protohalopte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7680contigL-elsbetiae_contig7680:2510..3186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score199.9
Seed ortholog evalue9.3e-49
Seed eggNOG ortholog38833.XP_003063400.1
KEGG rclassRC00061
KEGG koko:K03934
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006950,GO:0006979,GO:0008137,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009853,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0048037,GO:0050136,GO:0050896,GO:0051536,GO:0051540,GO:0055114,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
EggNOG free text desc.Belongs to the complex I 75 kDa subunit family
EggNOG OGs34HG0@3041,37RAU@33090,COG1034@1,KOG2282@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size677
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7680.16614.1prot_L-elsbetiae_contig7680.16614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7680 2648..3145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.230816-UTR-L-elsbetiae_contig7680:2509..26471622816853.230816-UTR-L-elsbetiae_contig7680:2509..2647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7680 2510..2647 +
1691683862.7133672-UTR-L-elsbetiae_contig7680:2509..26471691683862.7133672-UTR-L-elsbetiae_contig7680:2509..2647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7680 2510..2647 +
1622816853.2586627-UTR-L-elsbetiae_contig7680:3145..31861622816853.2586627-UTR-L-elsbetiae_contig7680:3145..3186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7680 3146..3186 +
1691683862.7448215-UTR-L-elsbetiae_contig7680:3145..31861691683862.7448215-UTR-L-elsbetiae_contig7680:3145..3186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7680 3146..3186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.2466896-CDS-L-elsbetiae_contig7680:2647..31451622816853.2466896-CDS-L-elsbetiae_contig7680:2647..3145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 2648..3145 +
1691683862.7328498-CDS-L-elsbetiae_contig7680:2647..31451691683862.7328498-CDS-L-elsbetiae_contig7680:2647..3145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7680 2648..3145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7680.16614.1

>prot_L-elsbetiae_contig7680.16614.1 ID=prot_L-elsbetiae_contig7680.16614.1|Name=mRNA_L-elsbetiae_contig7680.16614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MCLVEVSKSPKPQASCALPFLPNLRIFTNTALVRKAQESVMELLLLHHPL
DCPVCDQGGECELQEQSFNFGSDRGRFLFFKNSLGDTFWGGLIKTVLRRC
IVCTRCVRYTHQIGGSDLIGTSNRGGHSEIGMYKESVLKTETSGGVIELC
PVGWLKTRKSLWNYS*
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mRNA from alignment at L-elsbetiae_contig7680:2510..3186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7680.16614.1 ID=mRNA_L-elsbetiae_contig7680.16614.1|Name=mRNA_L-elsbetiae_contig7680.16614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=677bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:2510..3186+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCTTAGTATATCTATAAATGATCTTTTAGTTTGGGTTAAAAAAGGCTC
TACAGTGATACAAGCTTGTCAAGCTGCTGGTGCGCAGGTTCCTAGGTTTT
GTTATCACGATAAACTTTTTGTTGCTGGTAACTGTCGTATGTGTCTTGTT
GAAGTTAGTAAGTCACCAAAGCCGCAAGCTTCATGTGCACTACCTTTTCT
ACCTAATTTAAGAATTTTTACAAATACCGCTTTAGTGCGAAAAGCTCAAG
AATCCGTGATGGAGTTGCTACTTTTGCACCATCCTCTAGATTGCCCAGTA
TGTGACCAAGGAGGAGAATGCGAATTACAGGAGCAAAGTTTTAACTTTGG
TTCAGATAGGGGTAGATTTCTTTTCTTTAAAAACTCTTTAGGTGACACTT
TTTGGGGTGGGCTTATTAAAACAGTTTTACGTCGTTGTATTGTTTGTACG
CGTTGTGTACGTTACACTCATCAGATTGGAGGTAGTGATTTAATAGGTAC
GTCTAATCGAGGCGGTCATTCAGAAATTGGTATGTATAAAGAGAGTGTGC
TTAAAACCGAAACTTCTGGTGGTGTCATTGAGTTATGTCCTGTTGGCTGG
TTAAAGACACGCAAAAGCTTATGGAATTATTCATAGGAATTTAATATTAT
GTTTTTTTTAAAAGAATATTACCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7680:2510..3186+

>mRNA_L-elsbetiae_contig7680.16614.1 ID=mRNA_L-elsbetiae_contig7680.16614.1|Name=mRNA_L-elsbetiae_contig7680.16614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig7680:2510..3186+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTCTTGTTGAAGTTAGTAAGTCACCAAAGCCGCAAGCTTCATGTGC
ACTACCTTTTCTACCTAATTTAAGAATTTTTACAAATACCGCTTTAGTGC
GAAAAGCTCAAGAATCCGTGATGGAGTTGCTACTTTTGCACCATCCTCTA
GATTGCCCAGTATGTGACCAAGGAGGAGAATGCGAATTACAGGAGCAAAG
TTTTAACTTTGGTTCAGATAGGGGTAGATTTCTTTTCTTTAAAAACTCTT
TAGGTGACACTTTTTGGGGTGGGCTTATTAAAACAGTTTTACGTCGTTGT
ATTGTTTGTACGCGTTGTGTACGTTACACTCATCAGATTGGAGGTAGTGA
TTTAATAGGTACGTCTAATCGAGGCGGTCATTCAGAAATTGGTATGTATA
AAGAGAGTGTGCTTAAAACCGAAACTTCTGGTGGTGTCATTGAGTTATGT
CCTGTTGGCTGGTTAAAGACACGCAAAAGCTTATGGAATTATTCATAGAT
GTGTCTTGTTGAAGTTAGTAAGTCACCAAAGCCGCAAGCTTCATGTGCAC
TACCTTTTCTACCTAATTTAAGAATTTTTACAAATACCGCTTTAGTGCGA
AAAGCTCAAGAATCCGTGATGGAGTTGCTACTTTTGCACCATCCTCTAGA
TTGCCCAGTATGTGACCAAGGAGGAGAATGCGAATTACAGGAGCAAAGTT
TTAACTTTGGTTCAGATAGGGGTAGATTTCTTTTCTTTAAAAACTCTTTA
GGTGACACTTTTTGGGGTGGGCTTATTAAAACAGTTTTACGTCGTTGTAT
TGTTTGTACGCGTTGTGTACGTTACACTCATCAGATTGGAGGTAGTGATT
TAATAGGTACGTCTAATCGAGGCGGTCATTCAGAAATTGGTATGTATAAA
GAGAGTGTGCTTAAAACCGAAACTTCTGGTGGTGTCATTGAGTTATGTCC
TGTTGGCTGGTTAAAGACACGCAAAAGCTTATGGAATTATTCATAG
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