mRNA_L-elsbetiae_contig768.16611.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig768.16611.1
Unique NamemRNA_L-elsbetiae_contig768.16611.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig768.16611.1 vs. uniprot
Match: D8LPW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 8.230e-130
Identity = 198/230 (86.09%), Postives = 210/230 (91.30%), Query Frame = -3 
Query:    1 DEDMQRTREGLPPLKVDCAGVHVFPLLPTTPMPLGYVASAPVVMEVYQSQRYSMVTGEWSTPYMVHDGPEFSTKDWRHAHPADNREKPLDSIDLPDERHWSWRDGWHVDFSRKVGTEIDEAGWEYRVEFASFNLISSSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLHLAWQIDVTPQGRLEATIRSTVQLTNSTGLLLEVRALCSAWPPTEDFSEGPGRRSLGSVA 690
            D D+QRTRE LPPLKVD  GVHVFPLLPTTP+P GYVASAPVV+E +QSQRY+M+TG WS PYM HDGPEF+TKDWRH HPAD RE+PL+SI LPDER W+WRD WHVDFS+ VGTEIDEAGWEYRVE ASFNLI+SSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLHLAWQIDVTPQGRLEATIRSTVQLTNSTGL LEVRALCSAWP TED SEGPGRRSLG VA
Sbjct: 1795 DPDIQRTREALPPLKVDRKGVHVFPLLPTTPLPSGYVASAPVVVEAFQSQRYNMMTGVWSAPYMSHDGPEFTTKDWRHGHPADGRERPLESIALPDERLWAWRDDWHVDFSKAVGTEIDEAGWEYRVEMASFNLIASSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLHLAWQIDVTPQGRLEATIRSTVQLTNSTGLPLEVRALCSAWPATEDISEGPGRRSLGFVA 2024
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BLAST of mRNA_L-elsbetiae_contig768.16611.1 vs. uniprot
Match: A0A6H5L0S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S6_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 2.910e-127
Identity = 194/230 (84.35%), Postives = 205/230 (89.13%), Query Frame = -3 
Query:    1 DEDMQRTREGLPPLKVDCAGVHVFPLLPTTPMPLGYVASAPVVMEVYQSQRYSMVTGEWSTPYMVHDGPEFSTKDWRHAHPADNREKPLDSIDLPDERHWSWRDGWHVDFSRKVGTEIDEAGWEYRVEFASFNLISSSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLHLAWQIDVTPQGRLEATIRSTVQLTNSTGLLLEVRALCSAWPPTEDFSEGPGRRSLGSVA 690
            D DMQRTRE LPPLKVD  GVHVFPLLPTTPMP  YVASAPVV+E +Q QRY+M+TG WS PYM HDGPEF+TKDWRH HPAD RE+PL+SI LPDER W WRD WHVDFS+ VGTEIDEAGWEYRVE ASFNLI+SSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLH+AWQIDVTPQGR+EATIRSTVQL NSTGL LEVRALCS WP TED SEGPGRRSLG VA
Sbjct: 1181 DPDMQRTREALPPLKVDSKGVHVFPLLPTTPMPSSYVASAPVVVEAFQYQRYNMMTGVWSAPYMSHDGPEFTTKDWRHGHPADRRERPLESIALPDERLWVWRDDWHVDFSKAVGTEIDEAGWEYRVEMASFNLIASSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLHIAWQIDVTPQGRIEATIRSTVQLANSTGLPLEVRALCSVWPATEDISEGPGRRSLGFVA 1410
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BLAST of mRNA_L-elsbetiae_contig768.16611.1 vs. uniprot
Match: A0A6H5JHN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHN3_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 6.020e-105
Identity = 168/243 (69.14%), Postives = 198/243 (81.48%), Query Frame = -3 
Query:    1 DEDMQRTREGLPPLKVDCAGVHVFPLLPTTPMPLGYVASAPVVMEVYQSQRYSMVTGEWSTPYMVHDGPEFSTKDWRHAHPA-DNREKPLDSIDLPDERHWSWRDGWHVDFSRKVGTEIDEAGWEYRVEFASFNLISSSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLHLAWQIDVTPQGRLEATIRSTVQLTNSTGLLLEVRALCSAWPPTED------------FSEGPGRRSLGSVA 690
            +EDM+  REGLPPL+VD  GV VFPL PT  +P G+V S PVV+E YQ+QR++M+T  WS PY+  DGPEF++KDWR+A+ + D++E PLDSI LPDE+ W WRD WHVDFSR+VGTEID AGWEY VEF SFNLI+SSRTRRDLDQARRRKWIRTRAPKPLPM+DPFRPL+LAW +DVTPQGRLEATIRSTVQLTNSTG+ L++RALCSAW   ED            F++G GRRSLGS+A
Sbjct: 1432 NEDMRSAREGLPPLQVDRTGVFVFPLSPTNSVPSGHVVSPPVVVEAYQNQRFNMITRRWSAPYLPGDGPEFASKDWRNAYSSEDSQETPLDSIALPDEKQWEWRDDWHVDFSREVGTEIDAAGWEYAVEFGSFNLIASSRTRRDLDQARRRKWIRTRAPKPLPMDDPFRPLYLAWAVDVTPQGRLEATIRSTVQLTNSTGVPLDMRALCSAWKMEEDSDGGVSSPGSPSFAKGLGRRSLGSIA 1674
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BLAST of mRNA_L-elsbetiae_contig768.16611.1 vs. uniprot
Match: A0A836C8S3_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S3_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.570e-33
Identity = 64/101 (63.37%), Postives = 78/101 (77.23%), Query Frame = -3 
Query:   40 EIDEAGWEYRVEFASFNLISSSRTRRDLDQARRRKWIRTRAPKPLPMNDPFRPLHLAWQIDVTPQGRLEATIRSTVQLTNSTGLLLEVRALCSAWPPTEDF 342
            + DE GWEY ++FA F ++  SRT +DLDQARRR+WIRTRAP+PLP+NDP RPL L W++ VTPQG L AT RSTVQ++N+T L LEV ALCSAW     F
Sbjct: 2170 QTDEEGWEYAIDFAHFGMVHRSRTNKDLDQARRRRWIRTRAPRPLPLNDPHRPLELVWEVGVTPQGGLLATARSTVQISNATRLPLEVAALCSAWGTASCF 2270
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig768.16611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LPW3_ECTSI8.230e-13086.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0S6_9PHAE2.910e-12784.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN3_9PHAE6.020e-10569.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8S3_9STRA1.570e-3363.37Peroxin/Ferlin domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig768contigL-elsbetiae_contig768:17693..18387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size695
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.0353787-CDS-L-elsbetiae_contig768:17692..181691622816853.0353787-CDS-L-elsbetiae_contig768:17692..18169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig768 17693..18169 +
1691683862.5772421-CDS-L-elsbetiae_contig768:17692..181691691683862.5772421-CDS-L-elsbetiae_contig768:17692..18169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig768 17693..18169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.048134-UTR-L-elsbetiae_contig768:18169..183871622816853.048134-UTR-L-elsbetiae_contig768:18169..18387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig768 18170..18387 +
1691683862.5881217-UTR-L-elsbetiae_contig768:18169..183871691683862.5881217-UTR-L-elsbetiae_contig768:18169..18387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig768 18170..18387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig768.16611.1prot_L-elsbetiae_contig768.16611.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig768 17693..18169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig768.16611.1

>prot_L-elsbetiae_contig768.16611.1 ID=prot_L-elsbetiae_contig768.16611.1|Name=mRNA_L-elsbetiae_contig768.16611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
GYRAQGAPAGTLGEVFRRRPRRAQSPDLQEQACAVGQLDGGADRGLKAPL
RSDVDLPGKVKRAEGVVHRQRLGRARAYPLAPPRLVQVPAGAAAADEVER
RKLDAVLPPRLVDLRTNFPGEVHVPAVPPRPVSLVGQINRIQGLLSVIRG
MSVAPVLG*
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mRNA from alignment at L-elsbetiae_contig768:17693..18387+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig768.16611.1 ID=mRNA_L-elsbetiae_contig768.16611.1|Name=mRNA_L-elsbetiae_contig768.16611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=695bp|location=Sequence derived from alignment at L-elsbetiae_contig768:17693..18387+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTACAGAGCCCAGGGAGCGCCTGCCGGGACCCTCGGAGAAGTCTTCCG
TCGGCGGCCACGCCGAGCACAGAGCCCTGACCTCCAGGAGCAGGCCTGTG
CTGTTGGTCAGCTGGACGGTGGAGCGGATCGTGGCCTCAAGGCGCCCCTG
CGGAGTGACGTCGATCTGCCAGGCAAGGTGAAGCGGGCGGAAGGGGTCGT
TCATCGGCAGCGGCTTGGGCGCGCGCGTGCGTATCCACTTGCGCCTCCGC
GCCTGGTCCAGGTCCCGGCGGGTGCGGCTGCTGCTGATGAGGTTGAACGA
CGCAAACTCGACGCGGTACTCCCACCCCGCCTCGTCGATCTCCGTACCAA
CTTTCCTGGAGAAGTCCACGTGCCAGCCGTCCCTCCACGACCAGTGTCTC
TCGTCGGGCAGATCAATAGAATCCAGGGGCTTCTCTCGGTTATCCGCGGG
ATGAGCGTGGCGCCAGTCCTTGGTTGAGAACTCCGGTCCGTCGTGGACCA
TGTACGGTGTCGACCACTCTCCGGTGACCATGCTGTACCGCTGGCTCTGG
TAGACCTCCATCACGACAGGGGCCGACGCAACATAGCCCAGCGGCATCGG
AGTGGTGGGCAGCAGCGGAAACACGTGAACACCGGCGCAGTCCACCTTCA
GGGGCGGCAGTCCCTCGCGCGTTCTCTGCATGTCCTCGTCGGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig768:17693..18387+

>mRNA_L-elsbetiae_contig768.16611.1 ID=mRNA_L-elsbetiae_contig768.16611.1|Name=mRNA_L-elsbetiae_contig768.16611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig768:17693..18387+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTACAGAGCCCAGGGAGCGCCTGCCGGGACCCTCGGAGAAGTCTTCCG
TCGGCGGCCACGCCGAGCACAGAGCCCTGACCTCCAGGAGCAGGCCTGTG
CTGTTGGTCAGCTGGACGGTGGAGCGGATCGTGGCCTCAAGGCGCCCCTG
CGGAGTGACGTCGATCTGCCAGGCAAGGTGAAGCGGGCGGAAGGGGTCGT
TCATCGGCAGCGGCTTGGGCGCGCGCGTGCGTATCCACTTGCGCCTCCGC
GCCTGGTCCAGGTCCCGGCGGGTGCGGCTGCTGCTGATGAGGTTGAACGA
CGCAAACTCGACGCGGTACTCCCACCCCGCCTCGTCGATCTCCGTACCAA
CTTTCCTGGAGAAGTCCACGTGCCAGCCGTCCCTCCACGACCAGTGTCTC
TCGTCGGGCAGATCAATAGAATCCAGGGGCTTCTCTCGGTTATCCGCGGG
ATGAGCGTGGCGCCAGTCCTTGGTTGAGGCTACAGAGCCCAGGGAGCGCC
TGCCGGGACCCTCGGAGAAGTCTTCCGTCGGCGGCCACGCCGAGCACAGA
GCCCTGACCTCCAGGAGCAGGCCTGTGCTGTTGGTCAGCTGGACGGTGGA
GCGGATCGTGGCCTCAAGGCGCCCCTGCGGAGTGACGTCGATCTGCCAGG
CAAGGTGAAGCGGGCGGAAGGGGTCGTTCATCGGCAGCGGCTTGGGCGCG
CGCGTGCGTATCCACTTGCGCCTCCGCGCCTGGTCCAGGTCCCGGCGGGT
GCGGCTGCTGCTGATGAGGTTGAACGACGCAAACTCGACGCGGTACTCCC
ACCCCGCCTCGTCGATCTCCGTACCAACTTTCCTGGAGAAGTCCACGTGC
CAGCCGTCCCTCCACGACCAGTGTCTCTCGTCGGGCAGATCAATAGAATC
CAGGGGCTTCTCTCGGTTATCCGCGGGATGAGCGTGGCGCCAGTCCTTGG
TTGA
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