mRNA_L-elsbetiae_contig767.16599.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig767.16599.1
Unique NamemRNA_L-elsbetiae_contig767.16599.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig767.16599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig767contigL-elsbetiae_contig767:2137..2814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816851.9531872-CDS-L-elsbetiae_contig767:2136..23411622816851.9531872-CDS-L-elsbetiae_contig767:2136..2341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 2137..2341 +
1691683861.7671406-CDS-L-elsbetiae_contig767:2136..23411691683861.7671406-CDS-L-elsbetiae_contig767:2136..2341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 2137..2341 +
1622816851.968173-CDS-L-elsbetiae_contig767:2756..28121622816851.968173-CDS-L-elsbetiae_contig767:2756..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 2757..2812 +
1691683861.7819512-CDS-L-elsbetiae_contig767:2756..28121691683861.7819512-CDS-L-elsbetiae_contig767:2756..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 2757..2812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig767.16599.1prot_L-elsbetiae_contig767.16599.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig767 2137..2812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig767.16599.1

>prot_L-elsbetiae_contig767.16599.1 ID=prot_L-elsbetiae_contig767.16599.1|Name=mRNA_L-elsbetiae_contig767.16599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
PQALRGGLDPPCQGPSHQARADVLRLGTTLRICGRSGREVRHRLGGQPQA
GSARASDTDHHRDRQRVGDSDERLPCFFRGPRRSFQG
back to top

mRNA from alignment at L-elsbetiae_contig767:2137..2814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig767.16599.1 ID=mRNA_L-elsbetiae_contig767.16599.1|Name=mRNA_L-elsbetiae_contig767.16599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig767:2137..2814+ (Laminarionema elsbetiae ELsaHSoW15)
CCACAGGCACTTCGCGGCGGCCTTGACCCCCCATGCCAAGGACCTTCCCA
TCAGGCGCGCGCTGATGTACTCCGACTGGGAACAACGCTCCGCATCTGCG
GCAGAAGCGGGAGAGAAGTTCGACACCGACTCGGAGGGCAACCGCAAGCT
GGCTCTGCGCGAGCCTCTGACACAGATCACCACCGGGATCGTCAGCGGGT
CGGTGGTGAGTGCACCGGTCCTGTCGCAGACCAGTTATGTAACTGAAACA
ACACAGGTGTCCCGGCAGGCGCATCCAAACAAGTACGAAGTGAATGTGTT
GACGACCAACGTGCGTCAGGCCTCGGGAGTAGGGGGGGGCTGTTGTCGTC
GACGGTACCACGCCAAACGATGCTACATATGATGTCGAGTGCGCATGTGC
TGCTGACGAAGTTGTGCTGAATGGGTGCCAAAATACAATTTTTCGATTGC
ACATTTGTACGTCACGGCCCTGCTCCTCCCGGCGTTCGCCCACGCGTACC
GTGCAACGCTCTTTCCGAGAGCCAAGGCATGTTGTTCGCGTGTGATTCCC
CCTTCTCTTAAAAACCACCCAACGTAACATCACCATGACCGGTTTGTTTT
TCTACCACACTTGTTGGCAGACAGCGATGAACGTCTTCCTTGCTTCTTTC
GAGGTCCTCGACGAAGCTTTCAGGGTGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig767:2137..2814+

>mRNA_L-elsbetiae_contig767.16599.1 ID=mRNA_L-elsbetiae_contig767.16599.1|Name=mRNA_L-elsbetiae_contig767.16599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig767:2137..2814+ (Laminarionema elsbetiae ELsaHSoW15)
CCACAGGCACTTCGCGGCGGCCTTGACCCCCCATGCCAAGGACCTTCCCA
TCAGGCGCGCGCTGATGTACTCCGACTGGGAACAACGCTCCGCATCTGCG
GCAGAAGCGGGAGAGAAGTTCGACACCGACTCGGAGGGCAACCGCAAGCT
GGCTCTGCGCGAGCCTCTGACACAGATCACCACCGGGATCGTCAGCGGGT
CGGTGCCACAGGCACTTCGCGGCGGCCTTGACCCCCCATGCCAAGGACCT
TCCCATCAGGCGCGCGCTGATGTACTCCGACTGGGAACAACGCTCCGCAT
CTGCGGCAGAAGCGGGAGAGAAGTTCGACACCGACTCGGAGGGCAACCGC
AAGCTGGCTCTGCGCGAGCCTCTGACACAGATCACCACCGGGATCGTCAG
CGGGTCGGTGACAGCGATGAACGTCTTCCTTGCTTCTTTCGAGGTCCTCG
ACGAAGCTTTCAGGGTACAGCGATGAACGTCTTCCTTGCTTCTTTCGAGG
TCCTCGACGAAGCTTTCAGGGT
back to top