mRNA_L-elsbetiae_contig7655.16586.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7655.16586.1 vs. uniprot
Match: D7FJB7_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB7_ECTSI) HSP 1 Score: 388 bits (996), Expect = 1.820e-118 Identity = 226/449 (50.33%), Postives = 298/449 (66.37%), Query Frame = 3 Query: 105 AAENSESTLMNQLSSSRSMSPTLSTSVPPGLAPDEYNLTMVVSVSDFLGSIAVTNLGVDSTPMIIASVPPQQTSALSRAYELSCFPGE-ICGNGLLTHPADILRDARVAATILRDAPQTSASDIEAVVALQADVVGLIVNAYLSLEASSSSVLAGSQALADALVPVNDNESPSDETLAEASRAVADMAATFTEHGARLDDASAQSLVSIVSVLFDGASASPTRSSFTSTMDASSTTALVEKGGYVSVLADVGHAMAYGAEAGEELAPISAGPLVVQPARVDAIDLAATTISVGKNGTRISFNAWENA--SDQDSGSMRSFSVAGFGPASSGLEGVTVIDAWDSSGMPEERFLEPIGIVTALADSGSIDVGLDTE-GLVGHLGCGYWSEDGGDWRTDGMVLGAIGMELDGNAATVECDTFHLSAFTSRRDSTTPQWSTADLLTDFSIFTE 1439 A +SES L+N+LSSS S+S TL+T+VP GL+ +E+NLT+VVS SD LGS A TNLG D PM++ SV P++ S L AY L+C+PGE C NG L +P D LRDARVA +L+ P T++ +E+ +LQ E SS+ + TL+EAS A ADM HGA LDDA+A SLV + S LFDG SASPT S+ A E G +++LADVG+A+A+G+EA EEL SAG LVVQPA+V ++D++ATTISVG NGT ISF++W+ A SDQD G R+FSVAGF S ++GVTV+DAWDS+G+PE++F PI + A+ + +ID+G D E G VGHLGCGYWSE+ G W TDG+VLG++ +LD AA ++C T+HL+AFTSR DSTTPQW+T DL+TDF++ + Sbjct: 416 AIASSESALVNRLSSSPSVSTTLTTNVPAGLSRNEFNLTIVVSASDTLGSTAATNLGEDGAPMVVTSVAPEEASLLPLAYNLTCYPGEPSCQNGSLPYPEDTLRDARVATALLQHVPLTTSDGVESTSSLQ--------------EIGSSA----------------------ESTLSEASSAAADMVDRVANHGAVLDDAAAVSLVLVTSALFDGLSASPTTSN--------EGAAFAENGDQLALLADVGNALAFGSEAEEELGETSAGSLVVQPAKVHSMDMSATTISVGPNGTHISFSSWDAAIGSDQDFGGARTFSVAGFSSTGSDMDGVTVVDAWDSAGVPEKQFSWPIDLSMAIPEPDAIDLGADIEKGDVGHLGCGYWSEESGSWETDGVVLGSLERDLDSTAAVIQCATYHLTAFTSRVDSTTPQWNTLDLVTDFTVLAQ 820
BLAST of mRNA_L-elsbetiae_contig7655.16586.1 vs. uniprot
Match: D7FJB6_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB6_ECTSI) HSP 1 Score: 366 bits (940), Expect = 2.110e-110 Identity = 236/456 (51.75%), Postives = 288/456 (63.16%), Query Frame = 3 Query: 117 SESTLMNQLSSSRSMSPTLSTSVPPGLAPDEYNLTMVVSVSDFLGSIAVTNLGVDSTPMIIASVPPQQTSALSRAYELSCFPGEICGNGLLTHPADILRDARVAATILRDAPQTSASDIEAVVALQADVVGLIVNAYLSLEASSSSVLAGSQALADALVPVNDNESPSDETLAEASRAVADMAATFTEHGARLDDASAQSLVSIVSVLFDGASASPTRSSFTSTMDASSTTALVEKGGYVSVLADVGHAMAYGAEAGEELAPISAGPLVVQPARVDAIDLAATTISVGKNGTRISFNAWENA--SDQDSGSMRSFSVAGFGPASSGLEGVTVIDAWDSSGMPEERFLEPIGIVTALADSGSIDVGLDTEGLVGHLGCGYWSEDGGDWRTDGMVLGAIGMELDGNAATV-ECDTFHLSAFTSRRDSTTPQWSTADLLTDFSIFTEYGAESWRSLLFL 1475 SES L+N+LSSS S SPTL T +P GLA D YN+T++VSVSD LGS A TNLG D TPMIIAS PP+Q + +VGLIV+AYLSLE SSSSV+AGSQ LA ALV D+ SD TLAE + AV DMA T E G LDDASA +LVS++SVLF G S S S+ T+ +S TAL+ K ++VLA+VG AMA AEAGEEL ISAG L +QPAR ID++ATTIS G G ++ F+AW++A S++D + R+F+VA F +SGL+GVTVIDAWDS+G PE +F P+G+ AL ++ S ++ E + H+GC YWSED GDW+TDGMVL A+G LD + V EC TFHLSAF R DSTTP WSTADL TDFSI EYGAESW +LLFL Sbjct: 590 SESVLVNRLSSSWSASPTLRTKIPSGLADDGYNVTILVSVSDSLGSTASTNLGADGTPMIIASTPPEQEN----------------------------------------------------------LVGLIVDAYLSLETSSSSVVAGSQTLAGALVSFADDGVLSDLTLAEVTEAVRDMAETAIELGETLDDASALALVSMLSVLFVGQSPSVPSSASTAV---TSDTALLRKEDSLAVLAEVGLAMATDAEAGEELDEISAGDLAMQPARAHPIDMSATTISAGGFGAQVEFDAWDSAVDSNEDLDNTRTFAVAVFNSTTSGLDGVTVIDAWDSTGAPEYQFPRPVGVSMALPETLSTGPEVEGENSLSHVGCAYWSEDSGDWKTDGMVLAALGAALDNTHSVVLECATFHLSAFAGREDSTTPTWSTADL-TDFSILAEYGAESWEALLFL 983
BLAST of mRNA_L-elsbetiae_contig7655.16586.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE) HSP 1 Score: 316 bits (810), Expect = 2.540e-92 Identity = 210/473 (44.40%), Postives = 278/473 (58.77%), Query Frame = 3 Query: 117 SESTLMNQLSSSRSMSPTLSTSVPPGLAPDEYNLTMVVSVSDFLGSIAVTNLGVDSTPMIIASVPPQQTSALSRAYELSCFPGE-ICGNGLLTHPADILRDARVAATILRDAPQTSASDIEAVVALQADVVGLIVNAYLSLEASSSSVLAGSQALADALVPVNDNESPSDETLAEASRAVADMAATFTEHGARLDDASAQSLVSIVSVLFDG-ASASPTRSSFTSTMDASSTTALVEKGGYVSVLADVGHAMAYGAEAGEELAPISAGPLVVQPARVDAIDLAATTISVGKNGTRISFNAWENAS--DQDSGSMRSFSVAGFGPASSGLEGVTVIDAW-----------DSSGMPEE-----------RFLEPIGIVTALADSGSIDVGLDTE-GLVGHLGCGYWSEDGGDWRTDGMVLGAIGMELDGNAATVECDTFHLSAFTSRRDSTTPQWSTADLLTDFSIFTEYGAES 1454 SEST +N+LSSS S+S TLST+VP G++ +++NLT+VVSVSD LGS+A T LG D PMI+ SV PQ+ S L AY L+C+P E C N L +P D LRDARVA +L+ P T+ +EA+ +LQ E SS+ + TL+EA A ADM HGA LDDA+A SLVS+ S LFDG +SASPT SS A E G +++LADVG+A+A +EA EEL SAG LV+QPA+V ++D++ATTISVG NGT ISF++W+ A DQ+ G R+FSVA F SG + ++ W ++ P E R + + D +ID+G D E VGHLGCGYWSE W TDG+VLG++G + D AA ++C T+HL+AFTSR DSTTPQW+T DLLTDF++ + ++ Sbjct: 465 SESTFVNKLSSSPSVSTTLSTNVPAGISRNDFNLTIVVSVSDTLGSMAATTLGEDGAPMIVRSVAPQEASLLPLAYNLTCYPDEPSCQNVSLPYPEDALRDARVATALLQHVPLTTLDGVEAMSSLQ--------------EIGSSA----------------------ESTLSEARSAAADMLDRVANHGAVLDDAAAVSLVSVASTLFDGPSSASPTTSSERG--------AFAENGDQLALLADVGNALALESEAEEELEATSAGSLVLQPAKVHSMDMSATTISVGPNGTHISFSSWDAAIGFDQEFGGARTFSVAVFSSTGSGNKVSCLLKCWCNVNVTLDLAISTTSFPAETDQLGLNFGNTREQSLVKYLLGHQDPDAIDLGADIEKDDVGHLGCGYWSEVSDSWETDGVVLGSLGWDPDSTAAVIQCATYHLTAFTSRMDSTTPQWNTLDLLTDFTVLAQAARQA 893 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7655.16586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7655.16586.1 >prot_L-elsbetiae_contig7655.16586.1 ID=prot_L-elsbetiae_contig7655.16586.1|Name=mRNA_L-elsbetiae_contig7655.16586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=448bp MNQLSSSRSMSPTLSTSVPPGLAPDEYNLTMVVSVSDFLGSIAVTNLGVDback to top mRNA from alignment at L-elsbetiae_contig7655:4317..9598+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7655.16586.1 ID=mRNA_L-elsbetiae_contig7655.16586.1|Name=mRNA_L-elsbetiae_contig7655.16586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5282bp|location=Sequence derived from alignment at L-elsbetiae_contig7655:4317..9598+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7655:4317..9598+ >mRNA_L-elsbetiae_contig7655.16586.1 ID=mRNA_L-elsbetiae_contig7655.16586.1|Name=mRNA_L-elsbetiae_contig7655.16586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2688bp|location=Sequence derived from alignment at L-elsbetiae_contig7655:4317..9598+ (Laminarionema elsbetiae ELsaHSoW15)back to top |