mRNA_L-elsbetiae_contig7654.16585.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7654.16585.1
Unique NamemRNA_L-elsbetiae_contig7654.16585.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7654.16585.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.070e-19
Identity = 59/114 (51.75%), Postives = 70/114 (61.40%), Query Frame = 2 
Query:    2 ACLSLDEDGFRKICDRYSSSPSSSPPPAKPDPLADMFASTPPTPTDAHGASGTIASHGGSSAGXXXXXASVAIERRRATVPAGERLPVLLKFCALRPAAAALSVSAVRWTVFQW 343
            AC++LDE+ F+K+   YS  P++       + L  M AS+PP      GA                   +VAIERRRATVP GERLPVLLKFCALRPAAA L+VSAVRWTVFQW
Sbjct: 1071 ACMALDEERFQKM---YSPKPAT-----HEEALMGMLASSPPIDATGDGA-------------------AVAIERRRATVPPGERLPVLLKFCALRPAAATLTVSAVRWTVFQW 1157
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BLAST of mRNA_L-elsbetiae_contig7654.16585.1 vs. uniprot
Match: D7FQP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 8.210e-19
Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 2 
Query:    2 ACLSLDEDGFRKICDRYSSSPSSSPPPAKPDPLADMFASTPPTPTDAHGASGTIASHGGSSAGXXXXXASVAIERRRATVPAGERLPVLLKFCALRPAAAALSVSAVRWTVFQW 343
            AC++LDE+ F+K    YS  P++       + L DM AS+PPTP  A                   XX   AIERRRATVP GERLPVLLKFCALRPA AAL+VS+VRWTVFQW
Sbjct:  659 ACMALDEEEFQKT---YSPKPATGE-----EALMDMLASSPPTPATAXXXXXXX------------XXXXXAIERRRATVPPGERLPVLLKFCALRPATAALTVSSVRWTVFQW 752
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7654.16585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPY7_9PHAE6.070e-1951.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQP4_ECTSI8.210e-1953.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7654contigL-elsbetiae_contig7654:6974..8315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816850.6263165-CDS-L-elsbetiae_contig7654:6973..70121622816850.6263165-CDS-L-elsbetiae_contig7654:6973..7012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 6974..7012 +
1691683860.8108072-CDS-L-elsbetiae_contig7654:6973..70121691683860.8108072-CDS-L-elsbetiae_contig7654:6973..7012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 6974..7012 +
1622816850.6391885-CDS-L-elsbetiae_contig7654:8008..83141622816850.6391885-CDS-L-elsbetiae_contig7654:8008..8314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 8009..8314 +
1691683860.825425-CDS-L-elsbetiae_contig7654:8008..83141691683860.825425-CDS-L-elsbetiae_contig7654:8008..8314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 8009..8314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7654.16585.1prot_L-elsbetiae_contig7654.16585.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7654 6974..8314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7654.16585.1

>prot_L-elsbetiae_contig7654.16585.1 ID=prot_L-elsbetiae_contig7654.16585.1|Name=mRNA_L-elsbetiae_contig7654.16585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
RLSVAGRGWVPQDLRQVLLFPVLLTPSRQTGPPGGYVRVDPPHPHRRPRS
LRHDRQSWWQQRRRRCRCRVGRDRAAPRHRPSGGTPPGAPQVLRAPPGRR
RALRLGRKVDGVPVE
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mRNA from alignment at L-elsbetiae_contig7654:6974..8315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7654.16585.1 ID=mRNA_L-elsbetiae_contig7654.16585.1|Name=mRNA_L-elsbetiae_contig7654.16585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1342bp|location=Sequence derived from alignment at L-elsbetiae_contig7654:6974..8315+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTTGTCTGTCGCTGGACGAGGATGGGTTCCGCAAGATGTGAGCCGCGT
GGCATTGTGCAGAGCGGTTGAGCGGGCGGGTGCAAAGGAGGGAGGGAGGC
GTTTTCGTGTCACGCTAATACAAGTATGTAGATACTACTGTAGATGTTTA
CATGGTTTTTTATTTATTTTGTTTGGATACCGAGGTATCTATTTACCAAA
CTCGGACGAAGATCCGAGTAGTTTGGGATAGTAGATACCACAGAGGAAAT
GTTATTTTCTGTGTTGATGGGGGGTTGATCAGGACGAGGATCCGAGGTAT
ATTGCCTGCCCAGAACCAAATAATTAATTAATTAATAAAAAAAAACACAC
ATATATATGCCTGCCCAAAACCAAATAATTAATTAATTAATAAAAAAAAA
CACACATATATATTTGGGGTAATGAATACCTAAATACAGTAGTAGAGATA
TGTACGAATGTGTTGTTTTCTGTGTTGATGGTGGTTTTATTTGACTGAGT
AATACCCATACCTGAGTCGTTCGGCCCTGGACCGGACCGCGGGGAGGAAG
GAGGCCGAGAAGAAGAGGGGGTGGTTTTGTGTGTTTTTTCGATACTAAAT
TTGTAGGCGAACGAGGGAGTAGAAAACTTGGTGTTGGACTTGGAGATTGT
TTTATTGAAGCTGGGTTGATTCGCTGCCGCTGCTCGCGTTGTTTGCGTGC
CCGCAACCGCGATGGAGGCGTTTGTCCCATCGGGCGGGCAGGATGAAAAG
CGGGGTCGAAAGGGCTCCAGGCGAAGATGGGGCGGCGAAAGTGTGTTGTC
CCTAACGGGGGGTCCCAAACGCTTCTATTCGCAAACAGTCTGCCGAGAAC
TTGCTATTTTTTTTCACGCCGCAGGCAGCCAGGAGCAAAGAGCAACCACC
CGTTCCCCTCTAAAATAAGTTTTGCCTAGTTTTCGCGAGCTCACCAGTTT
TTTTTCTTCCCTCTCCCCCCCGGGCGCACGCTGGCTTATTTTTTTCTTCC
TGTTTCCTCCCAAAATTTGTACCCATCGCCGAAAGCTGCGACAGGTACTC
CTCTTCCCCGTCCTCCTCACCCCCTCCCGCCAAACCGGACCCCCTGGCGG
ATATGTTCGCGTCGACCCCCCCCACCCCCACCGACGCCCACGGAGCCTCC
GGCACGATCGCCAGTCATGGTGGCAGCAGCGCCGGCGCCGGTGCCGGTGC
CGCGTCGGTCGCGATCGAGCGGCGCCGCGCCACCGTCCCAGCGGGGGAAC
GCCTCCCGGTGCTCCTCAAGTTCTGCGCGCTCCGCCCGGCCGCCGCCGCG
CTCTCCGTCTCGGCCGTAAGGTGGACGGTGTTCCAGTGGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7654:6974..8315+

>mRNA_L-elsbetiae_contig7654.16585.1 ID=mRNA_L-elsbetiae_contig7654.16585.1|Name=mRNA_L-elsbetiae_contig7654.16585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig7654:6974..8315+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTTGTCTGTCGCTGGACGAGGATGGGTTCCGCAAGATCGCTTGTCTGT
CGCTGGACGAGGATGGGTTCCGCAAGATCTGCGACAGGTACTCCTCTTCC
CCGTCCTCCTCACCCCCTCCCGCCAAACCGGACCCCCTGGCGGATATGTT
CGCGTCGACCCCCCCCACCCCCACCGACGCCCACGGAGCCTCCGGCACGA
TCGCCAGTCATGGTGGCAGCAGCGCCGGCGCCGGTGCCGGTGCCGCGTCG
GTCGCGATCGAGCGGCGCCGCGCCACCGTCCCAGCGGGGGAACGCCTCCC
GGTGCTCCTCAAGTTCTGCGCGCTCCGCCCGGCCGCCGCCGCGCTCTCCG
TCTCGGCCGTAAGGTGGACGGTGTTCCAGTGGAACTGCGACAGGTACTCC
TCTTCCCCGTCCTCCTCACCCCCTCCCGCCAAACCGGACCCCCTGGCGGA
TATGTTCGCGTCGACCCCCCCCACCCCCACCGACGCCCACGGAGCCTCCG
GCACGATCGCCAGTCATGGTGGCAGCAGCGCCGGCGCCGGTGCCGGTGCC
GCGTCGGTCGCGATCGAGCGGCGCCGCGCCACCGTCCCAGCGGGGGAACG
CCTCCCGGTGCTCCTCAAGTTCTGCGCGCTCCGCCCGGCCGCCGCCGCGC
TCTCCGTCTCGGCCGTAAGGTGGACGGTGTTCCAGTGGAA
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