mRNA_L-elsbetiae_contig7654.16584.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7654.16584.1
Unique NamemRNA_L-elsbetiae_contig7654.16584.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7654.16584.1 vs. uniprot
Match: D7FQP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP4_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 4.410e-35
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:   52 AAREASLMLTFEDLCWRYPEAARAAARAWERGRESSKLDMSFFPITERARGPPPPSQQLPTAAP---PSPSHNNADLLGIDFD 291
            AAREASLM+TFEDLCWRYP+AAR AARAWERGRE+SKLDMSFFPIT+RARGPPPPS++ P AAP   P+  H+NADLLGIDFD
Sbjct:  400 AAREASLMVTFEDLCWRYPDAARVAARAWERGRETSKLDMSFFPITDRARGPPPPSRKAPAAAPTATPNSPHSNADLLGIDFD 482
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BLAST of mRNA_L-elsbetiae_contig7654.16584.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.350e-33
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:   52 AAREASLMLTFEDLCWRYPEAARAAARAWERGRESSKLDMSFFPITERARGPPPPSQQLPTAAP---PSPSHNNADLLGIDFD 291
            AAREASLM+TFEDLCWRYP+AAR AARAWERGRE+SKLDMSFFPIT+RARGPPP S+  P AAP   PS   NNADLLGIDFD
Sbjct:  812 AAREASLMVTFEDLCWRYPDAARVAARAWERGRETSKLDMSFFPITDRARGPPPSSRNAPAAAPTATPSLPQNNADLLGIDFD 894
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7654.16584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQP4_ECTSI4.410e-3580.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPY7_9PHAE1.350e-3380.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7654contigL-elsbetiae_contig7654:4214..5316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue6.2e-31
Seed eggNOG ortholog2880.D7FQP4
KEGG koko:K20305
Hectar predicted targeting categoryother localisation
EggNOG OGs2EYW9@1,2T0B3@2759
Ec32 ortholog descriptionTRAPP III complex, Trs85
Ec32 orthologEc-16_001110.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816850.5869184-CDS-L-elsbetiae_contig7654:4213..43441622816850.5869184-CDS-L-elsbetiae_contig7654:4213..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 4214..4344 +
1691683860.7773266-CDS-L-elsbetiae_contig7654:4213..43441691683860.7773266-CDS-L-elsbetiae_contig7654:4213..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 4214..4344 +
1622816850.5971913-CDS-L-elsbetiae_contig7654:5095..53151622816850.5971913-CDS-L-elsbetiae_contig7654:5095..5315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 5096..5315 +
1691683860.7941022-CDS-L-elsbetiae_contig7654:5095..53151691683860.7941022-CDS-L-elsbetiae_contig7654:5095..5315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7654 5096..5315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7654.16584.1prot_L-elsbetiae_contig7654.16584.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7654 4214..5315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7654.16584.1

>prot_L-elsbetiae_contig7654.16584.1 ID=prot_L-elsbetiae_contig7654.16584.1|Name=mRNA_L-elsbetiae_contig7654.16584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
HSQQQQQQRQKQQQQKRAAREASLMLTFEDLCWRYPEAARAAARAWERGR
ESSKLDMSFFPITERARGPPPPSQQLPTAAPPSPSHNNADLLGIDFDGGG
DGEATAAAAAEEEAEAG
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mRNA from alignment at L-elsbetiae_contig7654:4214..5316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7654.16584.1 ID=mRNA_L-elsbetiae_contig7654.16584.1|Name=mRNA_L-elsbetiae_contig7654.16584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1103bp|location=Sequence derived from alignment at L-elsbetiae_contig7654:4214..5316+ (Laminarionema elsbetiae ELsaHSoW15)
CACTCCCAGCAGCAGCAGCAGCAGAGGCAAAAGCAGCAGCAGCAGAAGAG
GGCGGCGAGAGAGGCCAGCCTGATGCTCACTTTCGAGGACCTTTGCTGGA
GGTACCCCGAGGCCGCGCGGGCCGCCGCAAGGTGAGCGAGACACAACAAC
AGCAACAACAACAAAAACGGAGAAGGGGGCACCGGTGTATGGCAGTACTA
CTCTGCTGTAGGGGATCTACCGGAGTCGGGGGTGCCTGTGCCGGGTCGGG
GGGCATCAAGCAACCGCCGCTGCTGCTTTTTGTAGTCTGAGAAAAAGTGC
GTTTATATGTCCAAGGTATCTGCTTACAAGCGTCAGCTGGTTTATGTCCA
ACCCGCGAAATAGCCCATCCTGGGGGATCGACTGCTGTTGTACGTATGCA
TATATAGGCACGCTTACCTCCCGCAACGCCCCGGGACACAGTAGTGGTAT
CTACAAAATGAGCAATCCACGCGTGGTTCTGGGTTCTCGCAGAGAGTATT
TTTTGCGAAAAGTGGGGGGCTACATACTGTTGTAGCTGCCTGTGAGCGGC
TGACGAAGTGGTCTAGTGGATAAGACCACCTGGCGGACAACCATCTAACG
GGCACTGCCAGCAGGAGGCGCCCTGCCTTGTTCTACGTAAGCGCCATCGT
GATGCGTGTATGTATGTACTGTCTACGTACATACACGCGCGTATTTCCGC
ATGCACACACCGTCTCCGGCACCTGAAAAATATCGCACATCATGCATGCA
TGCATGAATGCATGTACCTAAAACAAATTATCCCCCGAAAATTCCATCCC
TCGTTCGTTTTTTTTTTTCTCGGGAACCCAACAAAAAACAAACTATTCGT
ACGAAAACCGAACAAAACGAATTAAAACGCAGGGCGTGGGAGAGGGGCCG
CGAGAGCAGCAAGCTGGACATGTCCTTCTTCCCCATCACCGAGCGCGCCC
GGGGACCGCCGCCTCCATCGCAGCAGTTACCTACAGCAGCGCCACCCTCG
CCCTCGCACAACAACGCGGATCTCCTCGGCATCGACTTTGACGGTGGCGG
GGACGGCGAGGCTACAGCGGCGGCGGCGGCAGAGGAAGAGGCGGAGGCAG
GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7654:4214..5316+

>mRNA_L-elsbetiae_contig7654.16584.1 ID=mRNA_L-elsbetiae_contig7654.16584.1|Name=mRNA_L-elsbetiae_contig7654.16584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig7654:4214..5316+ (Laminarionema elsbetiae ELsaHSoW15)
CACTCCCAGCAGCAGCAGCAGCAGAGGCAAAAGCAGCAGCAGCAGAAGAG
GGCGGCGAGAGAGGCCAGCCTGATGCTCACTTTCGAGGACCTTTGCTGGA
GGTACCCCGAGGCCGCGCGGGCCGCCGCAAGCACTCCCAGCAGCAGCAGC
AGCAGAGGCAAAAGCAGCAGCAGCAGAAGAGGGCGGCGAGAGAGGCCAGC
CTGATGCTCACTTTCGAGGACCTTTGCTGGAGGTACCCCGAGGCCGCGCG
GGCCGCCGCAAGGGCGTGGGAGAGGGGCCGCGAGAGCAGCAAGCTGGACA
TGTCCTTCTTCCCCATCACCGAGCGCGCCCGGGGACCGCCGCCTCCATCG
CAGCAGTTACCTACAGCAGCGCCACCCTCGCCCTCGCACAACAACGCGGA
TCTCCTCGGCATCGACTTTGACGGTGGCGGGGACGGCGAGGCTACAGCGG
CGGCGGCGGCAGAGGAAGAGGCGGAGGCAGGGGGCGTGGGAGAGGGGCCG
CGAGAGCAGCAAGCTGGACATGTCCTTCTTCCCCATCACCGAGCGCGCCC
GGGGACCGCCGCCTCCATCGCAGCAGTTACCTACAGCAGCGCCACCCTCG
CCCTCGCACAACAACGCGGATCTCCTCGGCATCGACTTTGACGGTGGCGG
GGACGGCGAGGCTACAGCGGCGGCGGCGGCAGAGGAAGAGGCGGAGGCAG
GG
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