mRNA_L-elsbetiae_contig765.16579.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig765.16579.1
Unique NamemRNA_L-elsbetiae_contig765.16579.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig765.16579.1 vs. uniprot
Match: A0A6H5JJB5_9PHAE (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJB5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.800e-7
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  160 RAPPLVGNLPQGDEFMVNTRDEVLHLRTYAPTDGEDIKALVFFLHGY 300
            R   L  NLP+GD F +N+R + LHLRT+ P  G ++KAL+F+ HGY
Sbjct:   25 RKTALDFNLPKGDNFFINSRKQRLHLRTFLPESGVEMKALLFWYHGY 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig765.16579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJB5_9PHAE1.800e-751.06Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig765contigL-elsbetiae_contig765:19882..21092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816850.202545-CDS-L-elsbetiae_contig765:19881..200731622816850.202545-CDS-L-elsbetiae_contig765:19881..20073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig765 19882..20073 +
1691683860.475737-CDS-L-elsbetiae_contig765:19881..200731691683860.475737-CDS-L-elsbetiae_contig765:19881..20073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig765 19882..20073 +
1622816850.2169473-CDS-L-elsbetiae_contig765:20983..210911622816850.2169473-CDS-L-elsbetiae_contig765:20983..21091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig765 20984..21091 +
1691683860.4871655-CDS-L-elsbetiae_contig765:20983..210911691683860.4871655-CDS-L-elsbetiae_contig765:20983..21091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig765 20984..21091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig765.16579.1prot_L-elsbetiae_contig765.16579.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig765 19882..21091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig765.16579.1

>prot_L-elsbetiae_contig765.16579.1 ID=prot_L-elsbetiae_contig765.16579.1|Name=mRNA_L-elsbetiae_contig765.16579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
GHYLLYLTYCQIPECKAIGRERERERERARVLIYRLLHPQRGARDGDMAE
GGSRAPPLVGNLPQGDEFMVNTRDEVLHLRTYAPTDGEDIKALVFFLHGY
back to top

mRNA from alignment at L-elsbetiae_contig765:19882..21092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig765.16579.1 ID=mRNA_L-elsbetiae_contig765.16579.1|Name=mRNA_L-elsbetiae_contig765.16579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1211bp|location=Sequence derived from alignment at L-elsbetiae_contig765:19882..21092+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCATTATCTGTTGTATTTAACATATTGCCAGATACCTGAATGCAAAGC
GATAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCGTGTCCTGATCT
ATCGCCTGCTGCATCCGCAGAGGGGAGCGAGAGACGGGGACATGGCGGAG
GGCGGATCTAGAGCACCACCACTCGTTGGCAACCTTCCCCAGGTAGATGT
CGCCCTCAACGGGCTCCCTTTCCGTGTATGTATGAGTCGAGAGACAACTC
CGTTGCCTGGTGGGGTATCTATCTAGTCTACGTATGTATGTAATTTTTCT
GCACATGCGTGACGCAATCAATCGTAGATATTTGGTGATGGGGATGGACG
GTCGAGTTGATACATGCAGTAGCTGGTAGGCGTTTCTCCTTTATGTGCCA
TTAGGTGTTCCGCTCAAAATCCACCATGATTGCGCCACACGCGCCGCCCT
TACGAAAACACACCGCTAGACTACAAGTCTATCTTGTTTCGTGATTATCC
TGGCATCCGCCACCTTATATTGACTGGCATCCGCCACCTTGATGAAAAGA
GTATCTGTAAGCGCAATGGTGATCATGTTTGTGTGTGCTGTGAAGATGCG
TTCACGCTCGGATGAACGAGATGTGTCGAGGAAAAAACGGTCTTTGCCGT
AAAAGTACATGTGCATTTACGCACCGACGATTGGGTCCACAGACGCAAAC
ATTTGGAAGGATGCTGATGTTTGTGCCAAAATTGGAAAATGGTTATACAT
GTGGTGGGTTGGGACCTGTGGATTCGGCCTGAAATTTACTTCTACACGGT
TGCACACAGCGAGGGTGTGTATGAAGGAATAGCCTACCGACAGAATCGCC
CCTGAGATGAGCATCTCTGAAGTTTGACAACCACGCCCCCCCCTTTTTTT
GCCTTTCCCCGTTTAAATCATGTCCAACTCTCATCAACCTTTCGCCATCC
AACTCTAAATTTACCCGTGGGCATCAAGCTCATGTACACAGGTTCCGTAT
TGTAGGTTTGAGATAGTGCGTTCTCTAGTTCTCCTGTCTACTAATAATAT
ATTCTGCTGCCTGCCGTGCACAAACAAAAAACCGAAATACTCGCCGAAAC
AGGGGGATGAGTTCATGGTAAACACCCGCGACGAGGTTTTGCACCTTCGC
ACCTATGCACCGACGGATGGGGAGGACATCAAGGCCCTGGTGTTCTTTTT
GCACGGGTACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig765:19882..21092+

>mRNA_L-elsbetiae_contig765.16579.1 ID=mRNA_L-elsbetiae_contig765.16579.1|Name=mRNA_L-elsbetiae_contig765.16579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig765:19882..21092+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCATTATCTGTTGTATTTAACATATTGCCAGATACCTGAATGCAAAGC
GATAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCGTGTCCTGATCT
ATCGCCTGCTGCATCCGCAGAGGGGAGCGAGAGACGGGGACATGGCGGAG
GGCGGATCTAGAGCACCACCACTCGTTGGCAACCTTCCCCAGGGTCATTA
TCTGTTGTATTTAACATATTGCCAGATACCTGAATGCAAAGCGATAGGGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGCCCGTGTCCTGATCTATCGCCTG
CTGCATCCGCAGAGGGGAGCGAGAGACGGGGACATGGCGGAGGGCGGATC
TAGAGCACCACCACTCGTTGGCAACCTTCCCCAGGGGGATGAGTTCATGG
TAAACACCCGCGACGAGGTTTTGCACCTTCGCACCTATGCACCGACGGAT
GGGGAGGACATCAAGGCCCTGGTGTTCTTTTTGCACGGGTACGGGGATGA
GTTCATGGTAAACACCCGCGACGAGGTTTTGCACCTTCGCACCTATGCAC
CGACGGATGGGGAGGACATCAAGGCCCTGGTGTTCTTTTTGCACGGGTAC
back to top