mRNA_L-elsbetiae_contig7646.16574.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7646.16574.1
Unique NamemRNA_L-elsbetiae_contig7646.16574.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: D7FIW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW1_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 7.500e-146
Identity = 240/357 (67.23%), Postives = 259/357 (72.55%), Query Frame = 1
Query:   46 RAMTTSKAG--GSQGRGGRTGGLAGDEKRKXXXXXXXXXXXXXXXXXXXXXSSMMTLKYSFQEPVGEIRITEDWSGEGNGIAGLQWPGGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTAKCVENVDMNLGPRGLADKASVRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFLRKVDQYFERETVDTSTIDTLAEVLPLGTLSDAAAVTAALARTAAAAAELAPLGEAITPLPPPPYAAALGVGE---EEGGDGEGGVVGAAVPGAILTVPGLEATGPDEIAQLPGQRALLRLRKKCDAGAGE 1101
            RAM  +  G  G+    GR+GG AGD KR+                     SS+MTLKYSFQEPVG+I ITEDWSG+GNG+AGLQWPGGVVLSRYMDCRQ FPEDHFVGR VIEVGAGCGLTSIY  LRGA+VTITDMD AKC +NVDMNL PRGL+ KASVRRLEWDCA ELALFEPPYD+VIAGDCLYEE CISPLLKTMWALSGP+TEVLLSGVVGH +LASFL +  QYFE ETVDTS IDTLAE LPLG  SDAAAV AALAR  A A           P    P AAA  V E   EE     GGV G  V  A L   G+E+     +AQLPGQRAL+RLRKKCDAGAGE
Sbjct:    4 RAMMATLPGAEGNNPPAGRSGGSAGDAKRRERAARKLEQQETEAAAGIDDGSSIMTLKYSFQEPVGDIHITEDWSGDGNGLAGLQWPGGVVLSRYMDCRQAFPEDHFVGRRVIEVGAGCGLTSIYTALRGADVTITDMDPAKCTDNVDMNLDPRGLSGKASVRRLEWDCAAELALFEPPYDIVIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFLGQARQYFELETVDTSKIDTLAEELPLGNQSDAAAVEAALARARATA----------EPTGLDPDAAARSVAERGPEEERKAGGGVGGPQVK-AALGGEGVESELA-AVAQLPGQRALMRLRKKCDAGAGE 348          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: A0A6H5L0W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W2_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 3.480e-113
Identity = 163/210 (77.62%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   91 GRTGGLAGDEKRKXXXXXXXXXXXXXXXXXXXXXSSMMTLKYSFQEPVGEIRITEDWSGEGNGIAGLQWPGGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTAKCVENVDMNLGPRGLADKASVRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFL 720
            GR+GG AGD KR+                     SSMMTLKYSFQEPVG+I ITEDWSG+GNG+AGLQWPGGVVLSRYMDCRQ FPEDHFVGR VIEVGAGCGLTSIY  LRGA VTITDMD AKC +NVDMNL PRGL+ KASVRRLEWDCA ELA+FEPPYDV+IAGDCLYEE CISPLLKTMWALSGP+TEVLLSGVVGH +LASFL
Sbjct:   16 GRSGGSAGDAKRRERAARKLEQQETEAAAGIDDGSSMMTLKYSFQEPVGDIHITEDWSGDGNGLAGLQWPGGVVLSRYMDCRQAFPEDHFVGRRVIEVGAGCGLTSIYTALRGANVTITDMDPAKCADNVDMNLDPRGLSGKASVRRLEWDCAAELAMFEPPYDVIIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFL 225          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: A0A836C9A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.090e-27
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  451 MDTAKCVENVDMNLGPRGLA-DKASVRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFLRKVDQYFERETVDTSTIDTLAE 786
            MDT KC ++++ N   RGL  D   V  L W   +   L +PP+D+++AGDCLY+E CI PLL+TM +L+  DT VLL G VG  I+ SF  KVD+YFER  VDT TIDTL++
Sbjct:    1 MDTEKCRDSIEANFEHRGLPLDTVQVEELVWGQTDVTPL-QPPFDIILAGDCLYQEACIEPLLQTMHSLASEDTLVLLCGAVGPKIIDSFNEKVDRYFERRVVDTKTIDTLSD 112          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: A0A8K0EHV9_BRALA (METTL21A protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EHV9_BRALA)

HSP 1 Score: 87.8 bits (216), Expect = 5.050e-16
Identity = 57/175 (32.57%), Postives = 90/175 (51.43%), Query Frame = 1
Query:  238 EIRITEDWSGEGNGIAGLQWPGGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITD--MDTAKCVENVDMNLGPRGLADKASVRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFLRKVDQYFERETV 756
            E+ I + W     G+A + W   VVL  Y++      +     +TV+E+GAG GLT + A L+GA+VTIT+  M  A    NV+ N+ P       +++ L W   + L L+   Y  VI  D +Y +     LLKT+  LS  +T VLL   + +    +FL+ +++ FE + V
Sbjct:  105 ELVIRQSW--RELGVAAVVWDAAVVLGEYLETEVTLTD-----QTVVELGAGTGLTGMVAALQGAKVTITEREMALASLRRNVESNILPGTTRHPVAIKELTW--GQNLHLYPTSYQYVIGADIIYIKETFQDLLKTLVHLSNYETVVLLGCKIRYERDTNFLKMLEEKFEVKEV 270          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: A0A0G4IJT4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJT4_PLABS)

HSP 1 Score: 85.5 bits (210), Expect = 9.500e-16
Identity = 56/158 (35.44%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  232 VGEIRITEDWSGEGNGIAG-LQWPGGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTAKCVENVDMNLGPRGLADKASVRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSG-PDTEVLLSGVVGH 699
            V  +R+ +D  G G+   G + W    VLSR++       E    G+T++E+GAGCGL SI    RGA VT TD D    + N+  NL    +ADK +   L+W  A  L     P+D ++  D LY+      LL T+ AL+  P T V ++  V H
Sbjct:   21 VDGVRLRQDLIGSGDNCTGTVLWDSAAVLSRHL------AEVPVAGKTILELGAGCGLVSIKLAQRGARVTATDGDET-VLGNLQHNLARNSVADKVATAILKWGAAN-LETHRDPFDFIVGSDLLYDPAQYDALLATLGALARWPATTVCVAYRVRH 170          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: W7TPG3_9STRA (Nicotinamide N-methyltransferase, putative n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPG3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-15
Identity = 58/204 (28.43%), Postives = 95/204 (46.57%), Query Frame = 1
Query:  238 EIRITEDWSGEGNGIAGLQWPGGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTAKCV--ENVDMN--LGPRGLAD------------------------KASVRRLEW--DCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFLRKVDQYFERETVD 759
            ++ + E++ GE + + G QWPGGV ++RY+D  + FP     G+T++++G+GCGL +  A   GA V   + D    +  EN+  N  L   G ++                        K  V    W  D    LA    P+D++IA  CLY    +  LL T+W +S   + +LL  ++G   L +F  +V  +F    +D
Sbjct:   64 KLSVQEEFGGE-SCVGGTQWPGGVRVARYLDNPKAFPPGTLKGKTLLDLGSGCGLVAAVAAKHGARVVAAEKDIVIPLLKENLTTNGVLLDHGASEHSKGNTSHASLPSSLPSNSPLEEGKVVVHEFYWGPDARHPLA----PFDLIIAAACLYMPKTVPLLLHTLWNVSDSQSLILLCSILGADTLQAFKEEVGGFFHIRALD 262          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: L8H851_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H851_ACACA)

HSP 1 Score: 86.7 bits (213), Expect = 1.750e-15
Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  223 QEPVGEIRITEDWSGEG-----NGIAGLQWPGGVVLSRYMD--CRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTAKCV--ENVDMNLGPRGLADKASVRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILAS--FLRKVDQYFE 744
            +E VGE+   E +  +      N +    W   V L+R+++   RQ  P    VG+ VIE+G+GCGLT I A L G   T TDM++       NV+ NL P        ++ L W    ELA F+P +D+V+  D +Y    +  LL T+  +S PD+ VL++    H   A+  FL  + +YF+
Sbjct:  101 REDVGELLTIELYQHQTSFRALNTVGLTVWKSSVALARFLEELWRQEGPS-FLVGKRVIELGSGCGLTGILATLLGGHTTFTDMESVLLWTNRNVEHNLDP--FKHTYRLKELHWG-RTELAAFQPGFDIVLGADLIYSPKVVMALLNTLHGVSRPDSRVLVA-FENHNPTATKLFLAHLPRYFD 280          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: A0A7N0RCG2_KALFE (Uncharacterized protein n=3 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RCG2_KALFE)

HSP 1 Score: 84.7 bits (208), Expect = 7.370e-15
Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  295 WPGGVVLSRYMD--CRQV-FPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTAKCV--ENVDMNLGPRGLADKAS-------VRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFLRKV-----DQYFERETVDTSTID 774
            W   VVL++Y++  CR+  F      G+ VIE+GAGCG+      L G +V  TD      +   NV+ N+      D  S       V  L+W   + ++  +PP+D +I  D +Y E  + PLLKT++A+SGP T +LL    GH I ++ + +       ++F+ +++  S +D
Sbjct:   39 WDASVVLAKYLERNCRRGRFSPSKLKGKRVIELGAGCGVAGFGMALLGCDVITTDQKEVLPLLSRNVERNISRIVQGDSNSDLFGSIKVAELDWGNEDHISAVDPPFDYIIGTDVVYAEHLLEPLLKTIFAVSGPKTTILL----GHEIRSTAVHEQMLDMWKKHFDVKSIPKSKMD 211          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: L8GY77_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GY77_ACACA)

HSP 1 Score: 83.2 bits (204), Expect = 1.340e-14
Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  280 IAGLQWPGGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTA-KCVENVDMNLGPRGLADKASVRRLEWDCAEELALFEPP---YDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLS 684
            + G  W   +VL++Y++ RQ  P D   GR +IE+G+GCGL  I AVL GAEV +TD+    +  +N+D N+ P  L  +A+V    W   E   + E     +D+++  D +Y+   + PL+KT+  L+  DT+++L+
Sbjct:   43 VGGTLWDSSLVLAKYLE-RQYHP-DGLAGRRIIELGSGCGLVGIAAVLMGAEVVMTDVYALDQLQQNIDDNV-PAELRQRAAVAHYSWG-TEPSTMGEAGQGRWDMILGSDVVYDYRFMRPLIKTLHLLAAADTQIVLA 177          
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Match: A0A6P5A3F8_BRABE (protein N-lysine methyltransferase METTL21A-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A3F8_BRABE)

HSP 1 Score: 81.6 bits (200), Expect = 3.860e-14
Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 1
Query:  238 EIRITEDWSGEGNGIAGLQWPGGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITDMDTAKCV--ENVDMNLGPRGLADKASVRRLEWDCAEELALFEPPYDVVIAGDCLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFLRKVDQYFERETV 756
            E+ I + W     G+A + W   VVL  Y++      E     +TVIE+GAG GLT + A L+GA+VTIT+ + A      NV+ N+ P        ++ L W   + L  +   +  V+  D +Y +     LLKT+  LS  +T VLL   + +    +FL+ +++ FE + V
Sbjct:   58 ELVIRQSW--RELGVAAVVWDAAVVLGEYLES-----EVSLTDQTVIELGAGTGLTGMVAALQGAKVTITEREIALASLRSNVETNIPPGTTRHPVVIQELTW--GQNLHHYPTSFHYVLGADIIYLKKTFQDLLKTLVHLSNCETVVLLGCKIRYERDTNFLKMLEEKFEVKEV 223          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7646.16574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW1_ECTSI7.500e-14667.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0W2_9PHAE3.480e-11377.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9A2_9STRA2.090e-2751.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K0EHV9_BRALA5.050e-1632.57METTL21A protein n=2 Tax=Branchiostoma lanceolatum... [more]
A0A0G4IJT4_PLABS9.500e-1635.44Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
W7TPG3_9STRA1.380e-1528.43Nicotinamide N-methyltransferase, putative n=2 Tax... [more]
L8H851_ACACA1.750e-1533.51Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7N0RCG2_KALFE7.370e-1531.07Uncharacterized protein n=3 Tax=Kalanchoe fedtsche... [more]
L8GY77_ACACA1.340e-1435.25Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A6P5A3F8_BRABE3.860e-1431.43protein N-lysine methyltransferase METTL21A-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7646contigL-elsbetiae_contig7646:3365..7974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score425.6
Seed ortholog evalue2.3e-116
Seed eggNOG ortholog2880.D7FIW1
KEGG koko:K21806
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons6
Model size1105
Cds size1104
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7646.16574.1prot_L-elsbetiae_contig7646.16574.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7646 3365..7974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.5842836-CDS-L-elsbetiae_contig7646:3364..35531622816849.5842836-CDS-L-elsbetiae_contig7646:3364..3553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 3365..3553 +
1691683859.9840689-CDS-L-elsbetiae_contig7646:3364..35531691683859.9840689-CDS-L-elsbetiae_contig7646:3364..3553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 3365..3553 +
1622816849.596936-CDS-L-elsbetiae_contig7646:4629..47571622816849.596936-CDS-L-elsbetiae_contig7646:4629..4757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 4630..4757 +
1691683859.9974167-CDS-L-elsbetiae_contig7646:4629..47571691683859.9974167-CDS-L-elsbetiae_contig7646:4629..4757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 4630..4757 +
1622816849.6095743-CDS-L-elsbetiae_contig7646:5043..51861622816849.6095743-CDS-L-elsbetiae_contig7646:5043..5186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 5044..5186 +
1691683860.0078185-CDS-L-elsbetiae_contig7646:5043..51861691683860.0078185-CDS-L-elsbetiae_contig7646:5043..5186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 5044..5186 +
1622816849.623646-CDS-L-elsbetiae_contig7646:5687..58991622816849.623646-CDS-L-elsbetiae_contig7646:5687..5899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 5688..5899 +
1691683860.0182822-CDS-L-elsbetiae_contig7646:5687..58991691683860.0182822-CDS-L-elsbetiae_contig7646:5687..5899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 5688..5899 +
1622816849.64027-CDS-L-elsbetiae_contig7646:6475..65291622816849.64027-CDS-L-elsbetiae_contig7646:6475..6529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 6476..6529 +
1691683860.0287876-CDS-L-elsbetiae_contig7646:6475..65291691683860.0287876-CDS-L-elsbetiae_contig7646:6475..6529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 6476..6529 +
1622816849.654337-CDS-L-elsbetiae_contig7646:7596..79741622816849.654337-CDS-L-elsbetiae_contig7646:7596..7974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 7597..7974 +
1691683860.0393472-CDS-L-elsbetiae_contig7646:7596..79741691683860.0393472-CDS-L-elsbetiae_contig7646:7596..7974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7646 7597..7974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7646.16574.1

>prot_L-elsbetiae_contig7646.16574.1 ID=prot_L-elsbetiae_contig7646.16574.1|Name=mRNA_L-elsbetiae_contig7646.16574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=368bp
PSWSRWCPRLLFRQSRAMTTSKAGGSQGRGGRTGGLAGDEKRKERAARKL
EQEETEAAAGIDDDSSMMTLKYSFQEPVGEIRITEDWSGEGNGIAGLQWP
GGVVLSRYMDCRQVFPEDHFVGRTVIEVGAGCGLTSIYAVLRGAEVTITD
MDTAKCVENVDMNLGPRGLADKASVRRLEWDCAEELALFEPPYDVVIAGD
CLYEEGCISPLLKTMWALSGPDTEVLLSGVVGHGILASFLRKVDQYFERE
TVDTSTIDTLAEVLPLGTLSDAAAVTAALARTAAAAAELAPLGEAITPLP
PPPYAAALGVGEEEGGDGEGGVVGAAVPGAILTVPGLEATGPDEIAQLPG
QRALLRLRKKCDAGAGE*
back to top

mRNA from alignment at L-elsbetiae_contig7646:3365..7974+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7646.16574.1 ID=mRNA_L-elsbetiae_contig7646.16574.1|Name=mRNA_L-elsbetiae_contig7646.16574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4610bp|location=Sequence derived from alignment at L-elsbetiae_contig7646:3365..7974+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTCTTGGTCCCGCTGGTGCCCTAGACTGCTATTTAGACAGTCTAGAGC GATGACGACGTCTAAAGCCGGAGGCAGCCAAGGAAGGGGTGGAAGGACGG GGGGGTTGGCAGGAGATGAGAAGAGAAAGGAGCGAGCTGCGCGGAAACTG GAGCAAGAGGAGACCGAGGCAGCCGCCGGGATAGATGATGTGCGTGTTTA CGGTGGTGCTCAGCAGATGGCATCCTGAGTCGTACATATGCACAACAATG GCAGGATCATTGCGCAGCAGATGTTGTAAGTGTTTTTTTGGTGCATATGA GGCTGGCGTTCTTTGATCGCCTTCACCCCGTGGACGGACGTGTTCGGGAA GTGAGATGCATGAGTTGTGGAAGGCTGCAAACCAGAGCAGTGGATTCGGT GTCCCAAATGCTGGATCGGTGGGTTGGTTCTTTCTGCTTCTGGACACACA CACACACAAAGATGGTTGGCAAAAGCACTGGACGAGATCATTCCTTGCAG CAACCATCCTTTCGTGTACGCTTCTCATTCCTGAATCCGCGCACGCACGT GCACAGCACATGGTCGCACAAGGCCCTCTGGCCTTCGCCGTCACGCGTGT TGGCCACTGGGATCAGCAGCTCTCCCGGTGTCCACGCCACTTCGCTTTTT TAACACGGCGGTATTTTTTAACCGCGGCCTTTAGGGGTGACCTCGAGACC CAAAGAAGCAAAACAACGTCTCTCAACCGGCTTTGTAACATCAGGCCTCG GATACTGTTATGGCACGGGGGCGACCCAGATCGCCGTCACAGCAGCAGTG TTACACAGCACCGCAGGTCGTGCGGTGCGCCTTCGCAGCCGCGACCTGGT GCTGACGTTCGTATGTACATACATACAAACATAGCGGAGACCAAAGCACG TTCCCCGACAATATGGGTACAGCAGTAATATTTCTGTAGGTGAAAAGGCA CAAAGATGGCTGTGGTGTACGCTGACGTTCCTGCTGTGCGCGCTCACTGC ACCGCTGTTTCGCTGCTGCCTCTCTCTCTCTCGCTCTGTCTCTCTCGCTC TCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCCTCACAGACCCTCTAGACTACGCCCGCC GCCGACTTTTCTCTTCCTCAGAGAGCTCACATCAGACAGCTCTGCTACAC ATGCTACGGTTACACAGCCTTCCACACACCACATCGTACACGCCCACCAC CTTCGGCACAAACAGGACTCGTCCATGATGACGCTCAAGTACTCCTTCCA AGAGCCCGTCGGAGAGATCCGCATCACCGAGGACTGGTCGGGCGAGGGCA ACGGGATCGCCGGCTTGCAGTGGCCTGGGGGCGTCGTGCTCAGGTACACC TGAGAGAGCTGGGGGGGGGGGGGGGGCGCAAGGCAGGGGCTTGATGGTTG CAATTGACTCCGGTGGGGTGGGGTGATCAGGAAGACAAAAAAGAGAGACT TTTTGTTTTTTTCTGATAAATTAAGAGATGGCAAGGAGGACTTGCTGCTG CATACTGACGGTCAGGCGGCCCGCCGGCGCGACAAACGCAAACGCCGGAG ATGAAAACGCGCAGTTCTCTTACCTCGGGCCGCCTGTGCCGTTGTGTGTG CCTTGTGCCGGCACGCCGCTCGCGCGCAGCCGGTACATGGATTGCAGGCA GGTGTTTCCAGAGGACCACTTCGTCGGGCGCACGGTAATCGAGGTCGGCG CGGGCTGCGGGCTGACGAGCATCTACGCCGTCCTCCGCGGGGCGGAGGTC ACCATCACGGACATGGACACAGGTGGGCGGAGCGGCCCCGGCCAGGCCGG CTGAAGCTATTTAGAGACGGCGTTTGTCGTACGGTTTTGGAAGCCGGTTA TTGCAGTCAGCCCCGAGAGAGAGAGAGAGAGGGAGCGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTCGGAC GAGCATGCGGTCTAGTGTTTGTCGGTCATACTGCTGTGGTGTGCGCCGAA ACAGCAGTATGTAGCTGCCTTTGGTTCGTCTCGATTGATGTTTTTCCGTT TGTCCGCGCCCACTGAGATGAATCGTACAGTAGCTCTCGGGTGCGGAGGA GGCAGAAGAAGTCCCTGCATAGTACGTGTCTCTCTCGGTCGAACACCAAC ACGCACGGCGGTTATTTTTGAGCAGAAAACAGAAAGCAGAGAGCAGAGCA CCGGCCGACCACCCCCAGTACGACCGAAAATTGTTTTTTCCTTCGCCCTC CCCCCCCCCTGCGCCCGCAACAGCCAAGTGCGTCGAAAACGTAGACATGA ATCTCGGCCCGAGAGGGCTAGCCGACAAGGCGTCCGTGCGCCGGTTAGAG TGGGACTGCGCCGAGGAGCTTGCCCTGTTCGAGCCGCCGTACGACGTCGT GATCGCCGGGGACTGCCTCTACGAGGAGGGGTGCATCTCGCCGCTCCTCA AGACCATGTGGGCGCTGTCCGGGCCAGACACGGAGGTAGGTGCCCGCCGC TGTTTCGGTGTTCCCGTGTGCGTGTTCCCTCCCGCTGGTTTGCTTTGCGT CGCTGCTGGCGGGCGCGTGTATTGTTGTTATAGTTGTTGTCTTTGCGTTA AAAACCGTTCCGCTCTCTCTATGCAGTACCTCCATGAGTCCGTGCTAATC CAACGCTGACGCGGTCGATTCCCGTGGCCACAGGATAACTTACGCTAAAA AGGGCATGTGCTCTGAAAAAAACAAGAGGTTCAAGGTGAAAAAAACGAAC GCTTTGCTAGTCTCGCCGACACACCGTTCCGGCCGCAGCTAGCCCCCAGC GGCTTGTCCCATGGCCTATGCACATGCATAGTTACGCCGCAACGGGTCCG TCCCCGAAAAAACTCACCTGGTACAAAGCAGGCGTCCTCCACAACCTCCC GATCTCGACAGCCTGGACCGTTCGACGTCTCTTTTTAGGTTATCGCCCCC ATCCTTTCATCGCGCCCTGCAAAAGACTGCACCAAGCCTAAGCTTCTCCT AGCCTCACCCAGTGTAGACCCTTGCCCGATGAACTATTTACTACCCCACC CATACCGGCAGGTTCTGTTGAGCGGCGTGGTGGGACACGGGATACTGGCG AGCTTTCTGCGCAAGGTGAGGCGGGGGCGGGGGCGGCGGGCGGTGCCTGT CTGATGTGGCGCGTGTTTACCCTTCGGTCTGCGGCGGGTGCTCGTTGTCT CGAGCGGTCCGCCAAGTAGGCATGTGACTCGGTATGTTTTTTTCTCTTCG GTGTACCTACACCTTTCTGTTTCCTGTGTTGTGTTTGCTTTCGTCCCATT TATTCGGGCGCCTGCCACACGTTTCGGTGTGTGTACACAACATGCACGTT GCGGTGCTGCTTCTTTGTACGGCATGACGTGTCCGCCGGGGTTATTTTTC CTCAAAATACACCTCTTATTTTTCCCTACACTAGACCCAGTTTTAATAAG GGTTTTTGTTCCTCCGCAATTTCGCAAAAATCACATTCTATTTTGAAGTA GATGACAACATTACGGCATCACGGTGGGCTCTACCCGCTGAAAAATAGTT GGCCGACCTCGCACATCTAATTCTCTGCAGGGGAGATGTTGAATTCTTCT GATATTTAGGTTGTTTTTTCTGCTCGCTTCGCCAAATATTACGTCTCTGT ATGGAATACCGTTTGAACCCCATATCGAGTCTCTGCTCTAGTATGGGTTA GGTTCCATCTTTGATTCTTTGTTTTATTTTAAAAAATCACATGTACCGAG TCACAAGCCTATCCGCCTATCTGCCAGCGGCAGCGCACGAGGGCCCGGCG TCGTTTCGATGTCCGTCTATTTAGGTACCTCTCGGAAAGGGGAACAGGGA AGGGTGCAGGGGCGGTCTCGTCTGCACGCCCCGGTCTGTGCCTTGCTTGG GCTCAGTGACAACCTACCGCCAACCCCTATCGTCGCTTTGGGGGGGGGGG GGGGGGGTCGGTGTGGAGTCTACCTATGTATCGCCTCCCAGTGGCCGATG CGTGCACCGATCGCTTCTTGATTGTCCACTCATTCCCGCTGCTGCATATC GTCCTCGTGTCTGTTGTCCGTTTTGTTGTTGTCTGCTGCCCTCCGTGTTA TTTTTTGTGTGTGTGTGTGTGTTCTTGTTTGTTCGCGGATAATAATGTGC ATCACTTGCGCCTCCGGCAACAAAACCAAAAGGTTGACCAGTATTTCGAG CGGGAGACGGTGGACACCTCCACGATAGACACCCTGGCGGAGGTGCTGCC GCTGGGCACCCTGAGCGACGCGGCCGCGGTCACCGCGGCGTTGGCCCGCA CGGCCGCCGCCGCCGCCGAGCTCGCCCCCCTCGGCGAGGCAATAACACCC CTGCCGCCGCCGCCGTATGCCGCCGCACTCGGCGTCGGAGAAGAGGAGGG CGGGGACGGTGAGGGGGGTGTAGTCGGGGCGGCCGTGCCGGGGGCGATCT TGACGGTGCCGGGCTTGGAGGCAACAGGGCCGGATGAGATAGCTCAGCTG CCCGGGCAGCGAGCGCTGCTTCGATTACGCAAGAAATGCGACGCCGGGGC GGGGGAGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7646:3365..7974+

>mRNA_L-elsbetiae_contig7646.16574.1 ID=mRNA_L-elsbetiae_contig7646.16574.1|Name=mRNA_L-elsbetiae_contig7646.16574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2208bp|location=Sequence derived from alignment at L-elsbetiae_contig7646:3365..7974+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTCTTGGTCCCGCTGGTGCCCTAGACTGCTATTTAGACAGTCTAGAGC
GATGACGACGTCTAAAGCCGGAGGCAGCCAAGGAAGGGGTGGAAGGACGG
GGGGGTTGGCAGGAGATGAGAAGAGAAAGGAGCGAGCTGCGCGGAAACTG
GAGCAAGAGGAGACCGAGGCAGCCGCCGGGATAGATGATCCGTCTTGGTC
CCGCTGGTGCCCTAGACTGCTATTTAGACAGTCTAGAGCGATGACGACGT
CTAAAGCCGGAGGCAGCCAAGGAAGGGGTGGAAGGACGGGGGGGTTGGCA
GGAGATGAGAAGAGAAAGGAGCGAGCTGCGCGGAAACTGGAGCAAGAGGA
GACCGAGGCAGCCGCCGGGATAGATGATGACTCGTCCATGATGACGCTCA
AGTACTCCTTCCAAGAGCCCGTCGGAGAGATCCGCATCACCGAGGACTGG
TCGGGCGAGGGCAACGGGATCGCCGGCTTGCAGTGGCCTGGGGGCGTCGT
GCTCAGGACTCGTCCATGATGACGCTCAAGTACTCCTTCCAAGAGCCCGT
CGGAGAGATCCGCATCACCGAGGACTGGTCGGGCGAGGGCAACGGGATCG
CCGGCTTGCAGTGGCCTGGGGGCGTCGTGCTCAGCCGGTACATGGATTGC
AGGCAGGTGTTTCCAGAGGACCACTTCGTCGGGCGCACGGTAATCGAGGT
CGGCGCGGGCTGCGGGCTGACGAGCATCTACGCCGTCCTCCGCGGGGCGG
AGGTCACCATCACGGACATGGACACAGCCGGTACATGGATTGCAGGCAGG
TGTTTCCAGAGGACCACTTCGTCGGGCGCACGGTAATCGAGGTCGGCGCG
GGCTGCGGGCTGACGAGCATCTACGCCGTCCTCCGCGGGGCGGAGGTCAC
CATCACGGACATGGACACAGCCAAGTGCGTCGAAAACGTAGACATGAATC
TCGGCCCGAGAGGGCTAGCCGACAAGGCGTCCGTGCGCCGGTTAGAGTGG
GACTGCGCCGAGGAGCTTGCCCTGTTCGAGCCGCCGTACGACGTCGTGAT
CGCCGGGGACTGCCTCTACGAGGAGGGGTGCATCTCGCCGCTCCTCAAGA
CCATGTGGGCGCTGTCCGGGCCAGACACGGAGCCAAGTGCGTCGAAAACG
TAGACATGAATCTCGGCCCGAGAGGGCTAGCCGACAAGGCGTCCGTGCGC
CGGTTAGAGTGGGACTGCGCCGAGGAGCTTGCCCTGTTCGAGCCGCCGTA
CGACGTCGTGATCGCCGGGGACTGCCTCTACGAGGAGGGGTGCATCTCGC
CGCTCCTCAAGACCATGTGGGCGCTGTCCGGGCCAGACACGGAGGTTCTG
TTGAGCGGCGTGGTGGGACACGGGATACTGGCGAGCTTTCTGCGCAAGGT
TCTGTTGAGCGGCGTGGTGGGACACGGGATACTGGCGAGCTTTCTGCGCA
AGGTTGACCAGTATTTCGAGCGGGAGACGGTGGACACCTCCACGATAGAC
ACCCTGGCGGAGGTGCTGCCGCTGGGCACCCTGAGCGACGCGGCCGCGGT
CACCGCGGCGTTGGCCCGCACGGCCGCCGCCGCCGCCGAGCTCGCCCCCC
TCGGCGAGGCAATAACACCCCTGCCGCCGCCGCCGTATGCCGCCGCACTC
GGCGTCGGAGAAGAGGAGGGCGGGGACGGTGAGGGGGGTGTAGTCGGGGC
GGCCGTGCCGGGGGCGATCTTGACGGTGCCGGGCTTGGAGGCAACAGGGC
CGGATGAGATAGCTCAGCTGCCCGGGCAGCGAGCGCTGCTTCGATTACGC
AAGAAATGCGACGCCGGGGCGGGGGAGTGAGTTGACCAGTATTTCGAGCG
GGAGACGGTGGACACCTCCACGATAGACACCCTGGCGGAGGTGCTGCCGC
TGGGCACCCTGAGCGACGCGGCCGCGGTCACCGCGGCGTTGGCCCGCACG
GCCGCCGCCGCCGCCGAGCTCGCCCCCCTCGGCGAGGCAATAACACCCCT
GCCGCCGCCGCCGTATGCCGCCGCACTCGGCGTCGGAGAAGAGGAGGGCG
GGGACGGTGAGGGGGGTGTAGTCGGGGCGGCCGTGCCGGGGGCGATCTTG
ACGGTGCCGGGCTTGGAGGCAACAGGGCCGGATGAGATAGCTCAGCTGCC
CGGGCAGCGAGCGCTGCTTCGATTACGCAAGAAATGCGACGCCGGGGCGG
GGGAGTGA
back to top