mRNA_L-elsbetiae_contig764.16567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig764.16567.1
Unique NamemRNA_L-elsbetiae_contig764.16567.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig764.16567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig764contigL-elsbetiae_contig764:32415..32945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size532
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.9204555-CDS-L-elsbetiae_contig764:32414..327141622816848.9204555-CDS-L-elsbetiae_contig764:32414..32714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig764 32415..32714 +
1691683859.5077426-CDS-L-elsbetiae_contig764:32414..327141691683859.5077426-CDS-L-elsbetiae_contig764:32414..32714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig764 32415..32714 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.9352248-UTR-L-elsbetiae_contig764:32714..329451622816848.9352248-UTR-L-elsbetiae_contig764:32714..32945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig764 32715..32945 +
1691683859.5183105-UTR-L-elsbetiae_contig764:32714..329451691683859.5183105-UTR-L-elsbetiae_contig764:32714..32945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig764 32715..32945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig764.16567.1prot_L-elsbetiae_contig764.16567.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig764 32415..32714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig764.16567.1

>prot_L-elsbetiae_contig764.16567.1 ID=prot_L-elsbetiae_contig764.16567.1|Name=mRNA_L-elsbetiae_contig764.16567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
GWFCVSLLRIVTCFIGTSDFKPLFERIVRLRGFQSFQPPIAESTSKWCLP
THHVAYAGGFALLISWKVGCTNRYGCQKCFLRQLRRRAKPRIYCTCGNL*
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mRNA from alignment at L-elsbetiae_contig764:32415..32945+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig764.16567.1 ID=mRNA_L-elsbetiae_contig764.16567.1|Name=mRNA_L-elsbetiae_contig764.16567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=531bp|location=Sequence derived from alignment at L-elsbetiae_contig764:32415..32945+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGGTTTTGTGTGTCATTGCTCAGGATCGTAACTTGTTTCATTGGAAC
CAGCGATTTCAAGCCACTATTCGAACGCATTGTGCGGCTCCGGGGGTTTC
AATCTTTTCAGCCCCCCATAGCCGAGTCAACATCAAAATGGTGCTTGCCT
ACGCATCATGTAGCATACGCAGGGGGATTTGCGCTTCTGATTAGTTGGAA
AGTTGGTTGCACCAACCGCTACGGGTGTCAAAAGTGTTTTCTTCGTCAAC
TGCGTCGGCGCGCGAAGCCAAGGATTTACTGTACTTGTGGAAATCTATAA
AGTGGAAATTGAAAAAAAGACGTGGTGGTATGTAGGCTACATATACACGG
AGTATTCGTTTTCTTGACGGGGCACGAAAAGGTACGCCGGCTGAATATAC
TCCATAGATGGCCTAGGGTGTGTGGGTTACCCTAGGCTGCTTCCTTAGTT
TTGTTTTTGTATTAGTTGCTGTTCTTCTCGGTAGCGTCGGCTTTCTGTGA
TGTAGGTGTTCGCACTCGCTACATAGACATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig764:32415..32945+

>mRNA_L-elsbetiae_contig764.16567.1 ID=mRNA_L-elsbetiae_contig764.16567.1|Name=mRNA_L-elsbetiae_contig764.16567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig764:32415..32945+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGGTTTTGTGTGTCATTGCTCAGGATCGTAACTTGTTTCATTGGAAC
CAGCGATTTCAAGCCACTATTCGAACGCATTGTGCGGCTCCGGGGGTTTC
AATCTTTTCAGCCCCCCATAGCCGAGTCAACATCAAAATGGTGCTTGCCT
ACGCATCATGTAGCATACGCAGGGGGATTTGCGCTTCTGATTAGTTGGAA
AGTTGGTTGCACCAACCGCTACGGGTGTCAAAAGTGTTTTCTTCGTCAAC
TGCGTCGGCGCGCGAAGCCAAGGATTTACTGTACTTGTGGAAATCTATAA
GGGTGGTTTTGTGTGTCATTGCTCAGGATCGTAACTTGTTTCATTGGAAC
CAGCGATTTCAAGCCACTATTCGAACGCATTGTGCGGCTCCGGGGGTTTC
AATCTTTTCAGCCCCCCATAGCCGAGTCAACATCAAAATGGTGCTTGCCT
ACGCATCATGTAGCATACGCAGGGGGATTTGCGCTTCTGATTAGTTGGAA
AGTTGGTTGCACCAACCGCTACGGGTGTCAAAAGTGTTTTCTTCGTCAAC
TGCGTCGGCGCGCGAAGCCAAGGATTTACTGTACTTGTGGAAATCTATAA
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