mRNA_L-elsbetiae_contig7637.16562.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7637.16562.1
Unique NamemRNA_L-elsbetiae_contig7637.16562.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.020e-61
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 1
Query:    1 VSGRCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLPGGLAVDS 297
            VSGRCQHETRKGTRCKKRVSFGYPL SVHNKL+Y VQIKPSTIPGAG+GLFATR+IPKGSWLCPYVGEETT+SCIHKRYPGTMTAPYT+QLPGGLAVDS
Sbjct:   21 VSGRCQHETRKGTRCKKRVSFGYPLRSVHNKLKYEVQIKPSTIPGAGEGLFATRSIPKGSWLCPYVGEETTMSCIHKRYPGTMTAPYTMQLPGGLAVDS 119          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: A0A6H5JFB7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB7_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 5.700e-39
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    7 GRCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLPG--GLAVD 294
            G+C H    GTRC+ RV FG P+C +HN ++YGV+IK STIPGAGKGLFAT  +PK SW+CPY GE TT++CIH+RYPG MTA YT ++PG   LA D
Sbjct:   25 GQCTHTRANGTRCRNRVCFGSPVCWLHNCIKYGVEIKDSTIPGAGKGLFATTRLPKDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEKIPGPANLAFD 122          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: B5LWM5_9PHYC (Putative lysine methyltransferase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM5_9PHYC)

HSP 1 Score: 133 bits (335), Expect = 2.550e-37
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 1
Query:   10 RCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLPGGLAVD 294
            +C      G RCK RV FG+PLC +HN  ++GV+IK STIPGAGKGLFATR IPK +W+CPY GEETT+ CIH+RYPG  TAPY  ++   +A D
Sbjct:   27 KCTFTRPNGLRCKNRVCFGFPLCWIHNSQKFGVKIKQSTIPGAGKGLFATRQIPKNTWICPYSGEETTMECIHQRYPGDSTAPYAEKISDNIAYD 121          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: Q8QNC4_ESV1K (EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K)

HSP 1 Score: 132 bits (331), Expect = 1.000e-36
Identity = 60/96 (62.50%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    7 GRCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLPGGLAVD 294
            G+C H    G RCK RV FG P+C VHN  +YGV+IK STIPGAGKGLFATR IP+ SW+CPY GE TT++CIH+RYP   TA YT Q+   LA D
Sbjct:   25 GQCTHTRDDGLRCKNRVCFGSPVCWVHNARKYGVKIKDSTIPGAGKGLFATRKIPRDSWICPYSGEATTMNCIHQRYPEGETAAYTEQVQANLAYD 120          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: Q6XLV1_9PHYC (FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV1_9PHYC)

HSP 1 Score: 105 bits (263), Expect = 3.070e-26
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   10 RCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLP 276
            RC +    G +CKKRV  G+P C +H +  +GV +K STIP AGKGLFATR   K +W+CPY GE    +C  +RYPG  TAPY   LP
Sbjct:   38 RCAYVRPNGEQCKKRVCVGHPFCWIHVRAAFGVTVKTSTIPNAGKGLFATRDFKKNTWICPYFGEIIDANCFVQRYPGKATAPYAEMLP 126          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: A0A7C1JRQ2_9BACT (SET domain-containing protein n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7C1JRQ2_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 9.440e-18
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 VSGRCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLPGGLAVDS 297
            ++ +C      G RC++  +  +P C+ H ++ +GV+++PSTIPGAG GLFA R +PKG +L  Y G+  +++  + RY      PY I+L   + +D+
Sbjct:   20 ITKQCAFIHPNGERCRRLTTITHPYCAQHTRVVHGVEVRPSTIPGAGLGLFAVRYLPKGVFLFNYDGDRLSVADYNARYADMGFGPYAIELTASVIIDA 118          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: A0A2H5XTU5_9BACT (SET domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2H5XTU5_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 3.010e-16
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 VSGRCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLPGGLAVDS 297
            V+ +C +    G RC++  +  +P C+ H +  +GV+++PSTIPGAG GLFA R IPK ++L  Y G+  +++   +RY      PY I+L     +D+
Sbjct:   20 VTKQCAYVHPDGERCRRLTTLTHPYCAHHTRHVHGVEVRPSTIPGAGLGLFAVRRIPKDTFLFHYDGDRLSVAEYSERYAELGFGPYAIELNHRTVIDA 118          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: H3GV72_PHYRM (SET domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GV72_PHYRM)

HSP 1 Score: 53.9 bits (128), Expect = 7.210e-7
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   55 VSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVG 201
            + +GY L      L  GV+++ STIPGAGKGLFATR  P+GS +C Y G
Sbjct:    7 LRYGYAL-----PLHDGVEVRDSTIPGAGKGLFATRKHPQGSIVCEYTG 50          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.350e-6
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 1
Query:   13 CQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTISCIHKRY 237
            C H    GTRCKKRV FG P+C + +    GV+ K STIPGA +    T  +PK   +   + E  T++ + K +
Sbjct:  912 CTHTMANGTRCKKRVCFGSPVCRLLSSTNNGVKTKDSTIPGAAR----TTVVPKA--IHGVIPESMTLAYLTKAH 980          
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Match: A0A2C6JLE3_9APIC (Histone lysine set n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6JLE3_9APIC)

HSP 1 Score: 50.8 bits (120), Expect = 2.270e-5
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   58 SFGYPLC---SVHNKLEYG-VQIKPSTIPGAGKGLFATRTIPKGSWLCPYVGEETTI 216
            SF   LC      + LE G ++++PS IP AG GLFAT+ IP+G W+C Y+G + ++
Sbjct:   89 SFPSRLCVDIETGSFLEEGALEVRPSLIPSAGLGLFATQFIPEGVWVCEYLGRQLSL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7637.16562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5K4T1_9PHAE1.020e-6192.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFB7_9PHAE5.700e-3962.24SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
B5LWM5_9PHYC2.550e-3760.00Putative lysine methyltransferase n=1 Tax=Feldmann... [more]
Q8QNC4_ESV1K1.000e-3662.50EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K[more]
Q6XLV1_9PHYC3.070e-2651.69FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A7C1JRQ2_9BACT9.440e-1835.35SET domain-containing protein n=1 Tax=Chlorobi bac... [more]
A0A2H5XTU5_9BACT3.010e-1636.36SET domain-containing protein n=3 Tax=Bacteria Tax... [more]
H3GV72_PHYRM7.210e-753.06SET domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6H5JFA9_9PHAE2.350e-638.67SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2C6JLE3_9APIC2.270e-543.86Histone lysine set n=1 Tax=Cystoisospora suis TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7637contigL-elsbetiae_contig7637:1862..2158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.7204182-CDS-L-elsbetiae_contig7637:1861..21581622816848.7204182-CDS-L-elsbetiae_contig7637:1861..2158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7637 1862..2158 +
1691683859.3753297-CDS-L-elsbetiae_contig7637:1861..21581691683859.3753297-CDS-L-elsbetiae_contig7637:1861..2158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7637 1862..2158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7637.16562.1prot_L-elsbetiae_contig7637.16562.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7637 1862..2158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7637.16562.1

>prot_L-elsbetiae_contig7637.16562.1 ID=prot_L-elsbetiae_contig7637.16562.1|Name=mRNA_L-elsbetiae_contig7637.16562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
VSGRCQHETRKGTRCKKRVSFGYPLCSVHNKLEYGVQIKPSTIPGAGKGL
FATRTIPKGSWLCPYVGEETTISCIHKRYPGTMTAPYTIQLPGGLAVDS
back to top

mRNA from alignment at L-elsbetiae_contig7637:1862..2158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7637.16562.1 ID=mRNA_L-elsbetiae_contig7637.16562.1|Name=mRNA_L-elsbetiae_contig7637.16562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=297bp|location=Sequence derived from alignment at L-elsbetiae_contig7637:1862..2158+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTGGGCGGTGCCAGCACGAGACACGCAAAGGGACGCGGTGTAAAAA GAGAGTTTCCTTCGGCTACCCGCTGTGTTCGGTGCACAATAAACTAGAGT ACGGAGTCCAAATCAAGCCGTCGACAATCCCAGGAGCGGGCAAAGGGCTG TTCGCCACAAGAACCATCCCCAAAGGCTCGTGGCTGTGCCCGTATGTAGG CGAAGAAACCACGATAAGCTGCATACACAAACGGTACCCGGGCACAATGA CAGCACCCTACACGATACAGTTGCCGGGTGGGCTCGCAGTGGACTCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7637:1862..2158+

>mRNA_L-elsbetiae_contig7637.16562.1 ID=mRNA_L-elsbetiae_contig7637.16562.1|Name=mRNA_L-elsbetiae_contig7637.16562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig7637:1862..2158+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTGGGCGGTGCCAGCACGAGACACGCAAAGGGACGCGGTGTAAAAA
GAGAGTTTCCTTCGGCTACCCGCTGTGTTCGGTGCACAATAAACTAGAGT
ACGGAGTCCAAATCAAGCCGTCGACAATCCCAGGAGCGGGCAAAGGGCTG
TTCGCCACAAGAACCATCCCCAAAGGCTCGTGGCTGTGCCCGTATGTAGG
CGAAGAAACCACGATAAGCTGCATACACAAACGGTACCCGGGCACAATGA
CAGCACCCTACACGATACAGTTGCCGGGTGGGCTCGCAGTGGACTCCGTG
TCTGGGCGGTGCCAGCACGAGACACGCAAAGGGACGCGGTGTAAAAAGAG
AGTTTCCTTCGGCTACCCGCTGTGTTCGGTGCACAATAAACTAGAGTACG
GAGTCCAAATCAAGCCGTCGACAATCCCAGGAGCGGGCAAAGGGCTGTTC
GCCACAAGAACCATCCCCAAAGGCTCGTGGCTGTGCCCGTATGTAGGCGA
AGAAACCACGATAAGCTGCATACACAAACGGTACCCGGGCACAATGACAG
CACCCTACACGATACAGTTGCCGGGTGGGCTCGCAGTGGACTCC
back to top