mRNA_L-elsbetiae_contig7634.16557.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7634.16557.1
Unique NamemRNA_L-elsbetiae_contig7634.16557.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: D7G1L6_ECTSI (PEPD_MOUSE Xaa-Pro dipeptidase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 3.080e-77
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 1
Query:  109 KNPGGPSEMPALNLHPTVGEYPVDYTMHAENRAKVIARLRETDGVAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHFQ 477
            KNP  PSEMPAL LHPTVGEYPVDYTMHAENR KVI RLRETDGVAPRG LL RGGLAANRDETDHEPVFRQESTFHYLFGVREP+CLATIDL TGKATLFIPRLPA+YATWMG+ILPPKHFQ
Sbjct:   41 KNPRVPSEMPALELHPTVGEYPVDYTMHAENRGKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPNCLATIDLETGKATLFIPRLPAEYATWMGDILPPKHFQ 163          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A6H5KDB9_9PHAE (AMP_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB9_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 4.530e-73
Identity = 114/123 (92.68%), Postives = 114/123 (92.68%), Query Frame = 1
Query:  109 KNPGGPSEMPALNLHPTVGEYPVDYTMHAENRAKVIARLRETDGVAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHFQ 477
            KNP  PSEMPAL LHPTVGEYPVDYTMHAENRAKVI RLRETDGVAPRG LL RGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDL TGKATLFIPRLPA YATWMG ILPPKHFQ
Sbjct:   41 KNPRVPSEMPALELHPTVGEYPVDYTMHAENRAKVINRLRETDGVAPRGVLLLRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLETGKATLFIPRLPAVYATWMGEILPPKHFQ 163          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A7S1CA66_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA66_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.830e-37
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 1
Query:  175 VDYTMHAENRAKVIARLRETDG--VAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHFQ 477
            +D+++HA NRA V+  L+   G  V  +  +L +GG+A  RD+TDHEP+FRQES FHYLFGVREPDC   ID+ATG ATLFIPRLP  YATWMG+ILPP HFQ
Sbjct:   25 IDFSLHARNRAAVVDNLKRFGGATVPEKAVILVQGGVAETRDDTDHEPLFRQESNFHYLFGVREPDCFGAIDVATGAATLFIPRLPDVYATWMGDILPPAHFQ 127          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A7S1H3N2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H3N2_HEMAN)

HSP 1 Score: 113 bits (283), Expect = 5.170e-29
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  175 VDYTMHAENRAKVIARLRETDGVAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHF 474
            V  +MHA+NR ++++ + +    + +G  L  GG +  RD++DHE +FRQES FHYLFGV EPDCL  +D+  G ATLFIPRLPADYA WMG I   + F
Sbjct:   16 VPRSMHAQNRQRLVSLMNKQ---SCKGVALLLGGTSKTRDDSDHEEIFRQESNFHYLFGVAEPDCLGAVDVRNGAATLFIPRLPADYAMWMGPIASLEDF 112          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A7S2R9U7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9U7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.430e-28
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  133 MPALNLHPTVG----EYPVDYTMHAENRAKVIARLRETDGVAPRGA-LLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHF 474
            M AL+L    G     + +  TM++ENR +++ R ++    A  GA LLF+GG++  R++TDHE +FRQES F +LFGV EPDC ATI++ +G+ TLF+PR P +YA WMG I PP HF
Sbjct:   13 MAALDLPGAFGVHMPPFRIPRTMYSENRQRLVERFQQDQQGAVEGAVLLFKGGVSLTRNDTDHELIFRQESFFSHLFGVLEPDCYATIEVPSGRTTLFVPRFPQEYAVWMGPIHPPSHF 131          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A7S0YSS7_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YSS7_9CRYP)

HSP 1 Score: 118 bits (296), Expect = 4.140e-28
Identity = 55/101 (54.46%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  175 VDYTMHAENRAKVIARLRETDGVAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHFQ 477
            V  +MHA+NR ++++ +   D  + +G  L  GG    RD++DHE +FRQES FHYLFGV EPDCL  ID+  G ATLFIPRLPADYA WMG I  P+ F+
Sbjct:   37 VPRSMHAQNRQRLVSLM---DRKSCKGVALLLGGTGKTRDDSDHEEIFRQESNFHYLFGVAEPDCLGAIDVRDGSATLFIPRLPADYAMWMGPIASPEDFK 134          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A388JTW8_CHABU (AMP_N domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTW8_CHABU)

HSP 1 Score: 113 bits (283), Expect = 5.400e-28
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  163 GEYPVDYTMHAENR----AKVIARLRETDGVAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHFQ 477
            G +PV  +MHA NR     K++ R++E+ G      +L  GG++  R  TDHEP+FRQES F YLFGV+EP     +DLATGK  LF+P LP DYA WMG I  P+HF+
Sbjct:   31 GTHPVPMSMHAGNRKRLVTKMLKRIQESGGSPRNSVVLLEGGVSETRYCTDHEPLFRQESYFSYLFGVKEPGFYGALDLATGKCFLFMPLLPKDYAVWMGTIHGPEHFK 139          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A7S4EV76_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EV76_CHRCT)

HSP 1 Score: 117 bits (293), Expect = 1.390e-27
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  163 GEYPVDYTMHAENRAK----VIARLRETDGVAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHFQVR 483
            G +  D  +H E R K    + A+LR    + P G ++ RGG++ NRD+TDHE +FRQES FHYLFGV+EPD    +++ +G++TLFIPRLPA+YA WMG+I   +  + R
Sbjct:   52 GTFVADAALHREARRKAANALAAKLRTNGNIVPEGLIVLRGGVSRNRDDTDHEELFRQESYFHYLFGVKEPDWWGMVEVPSGRSTLFIPRLPAEYAVWMGHIASAESLRSR 162          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A1Y1HWQ9_KLENI (Metallopeptidase M24 family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWQ9_KLENI)

HSP 1 Score: 117 bits (292), Expect = 1.420e-27
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  154 PTVGEYPVDYTMHAENRAKVIARLRETDGVAPR--GALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMGNILPPKHFQ 477
            P   +Y V  ++HAENRAK++  L ET   A +  G +L +GG    R +TDHEP+FRQES F YLFGV E      +D+ATGK+ LF PRLP++YA WMG I PP+HF+
Sbjct:   28 PRFEKYVVPMSLHAENRAKLVKALGETLSAAGKENGVVLLQGGEQQTRYDTDHEPLFRQESYFAYLFGVTEAGFYGAVDVATGKSILFAPRLPSEYAIWMGKIQPPQHFK 137          
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Match: A0A7S1LQA6_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LQA6_ALECA)

HSP 1 Score: 107 bits (266), Expect = 1.270e-26
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  187 MHAENRAKVIARLRETDGVAPRGALLFRGGLAANRDETDHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMG 450
            MH  NR  ++ R RE    A R  LLF GG    R +TDHE VFRQESTFHYLFGV+EPD LA I   TG+ TLF+PRLP + A WMG
Sbjct:   52 MHRLNREALLQRFREARPAAGRAVLLFAGGPEPARHDTDHEDVFRQESTFHYLFGVQEPDYLAAISAETGETTLFMPRLPEEDAVWMG 139          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7634.16557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1L6_ECTSI3.080e-7791.06PEPD_MOUSE Xaa-Pro dipeptidase (ISS) n=1 Tax=Ectoc... [more]
A0A6H5KDB9_9PHAE4.530e-7392.68AMP_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S1CA66_9STRA2.830e-3763.11Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1H3N2_HEMAN5.170e-2952.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2R9U7_9STRA1.430e-2848.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0YSS7_9CRYP4.140e-2854.46Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A388JTW8_CHABU5.400e-2850.46AMP_N domain-containing protein n=1 Tax=Chara brau... [more]
A0A7S4EV76_CHRCT1.390e-2747.75Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1Y1HWQ9_KLENI1.420e-2751.82Metallopeptidase M24 family protein n=1 Tax=Klebso... [more]
A0A7S1LQA6_ALECA1.270e-2659.09Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7634contigL-elsbetiae_contig7634:1961..2464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue3.1e-60
Seed eggNOG ortholog2880.D7G1L6
Preferred namePEPP
KEGG koko:K14213
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0016787,GO:0016805,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0006@1,KOG2737@2759
Ec32 ortholog descriptionAminopeptidase P, N-terminal
Ec32 orthologEc-26_000900.1
EC3.4.13.9
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size504
Cds size504
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.2602117-CDS-L-elsbetiae_contig7634:1960..24641622816848.2602117-CDS-L-elsbetiae_contig7634:1960..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7634 1961..2464 -
1691683859.0380995-CDS-L-elsbetiae_contig7634:1960..24641691683859.0380995-CDS-L-elsbetiae_contig7634:1960..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7634 1961..2464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7634.16557.1prot_L-elsbetiae_contig7634.16557.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7634 1961..2464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7634.16557.1

>prot_L-elsbetiae_contig7634.16557.1 ID=prot_L-elsbetiae_contig7634.16557.1|Name=mRNA_L-elsbetiae_contig7634.16557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MPAAQMVTSAQQTSTSSSPPLIPLLPETIAAAKRRKKNPGGPSEMPALNL
HPTVGEYPVDYTMHAENRAKVIARLRETDGVAPRGALLFRGGLAANRDET
DHEPVFRQESTFHYLFGVREPDCLATIDLATGKATLFIPRLPADYATWMG
NILPPKHFQVRQFSAVQ*
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mRNA from alignment at L-elsbetiae_contig7634:1961..2464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7634.16557.1 ID=mRNA_L-elsbetiae_contig7634.16557.1|Name=mRNA_L-elsbetiae_contig7634.16557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig7634:1961..2464- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCAGCTCAGATGGTTACCTCCGCCCAGCAGACATCAACTTCATC GTCCCCGCCCCTGATCCCTCTCCTGCCGGAGACGATCGCCGCCGCGAAGC GACGCAAGAAAAACCCCGGAGGCCCTTCGGAGATGCCCGCCCTCAACCTG CACCCCACGGTGGGCGAGTACCCAGTCGACTACACGATGCACGCCGAAAA CCGCGCCAAGGTAATCGCCCGATTGCGCGAAACAGACGGGGTTGCCCCGC GCGGCGCGCTGCTCTTCCGCGGCGGCCTCGCGGCGAACAGAGACGAGACG GACCACGAGCCCGTGTTCCGGCAGGAATCGACCTTCCACTACTTGTTCGG GGTGAGGGAGCCTGACTGCCTCGCGACGATCGACCTCGCGACGGGGAAGG CGACTCTGTTCATCCCCAGGCTCCCGGCGGACTACGCCACCTGGATGGGC AACATCCTGCCGCCGAAGCACTTCCAGGTACGGCAGTTTTCAGCAGTACA GTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7634:1961..2464-

>mRNA_L-elsbetiae_contig7634.16557.1 ID=mRNA_L-elsbetiae_contig7634.16557.1|Name=mRNA_L-elsbetiae_contig7634.16557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig7634:1961..2464- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCAGCTCAGATGGTTACCTCCGCCCAGCAGACATCAACTTCATC
GTCCCCGCCCCTGATCCCTCTCCTGCCGGAGACGATCGCCGCCGCGAAGC
GACGCAAGAAAAACCCCGGAGGCCCTTCGGAGATGCCCGCCCTCAACCTG
CACCCCACGGTGGGCGAGTACCCAGTCGACTACACGATGCACGCCGAAAA
CCGCGCCAAGGTAATCGCCCGATTGCGCGAAACAGACGGGGTTGCCCCGC
GCGGCGCGCTGCTCTTCCGCGGCGGCCTCGCGGCGAACAGAGACGAGACG
GACCACGAGCCCGTGTTCCGGCAGGAATCGACCTTCCACTACTTGTTCGG
GGTGAGGGAGCCTGACTGCCTCGCGACGATCGACCTCGCGACGGGGAAGG
CGACTCTGTTCATCCCCAGGCTCCCGGCGGACTACGCCACCTGGATGGGC
AACATCCTGCCGCCGAAGCACTTCCAGGTACGGCAGTTTTCAGCAGTACA
GTAGATGCCGGCAGCTCAGATGGTTACCTCCGCCCAGCAGACATCAACTT
CATCGTCCCCGCCCCTGATCCCTCTCCTGCCGGAGACGATCGCCGCCGCG
AAGCGACGCAAGAAAAACCCCGGAGGCCCTTCGGAGATGCCCGCCCTCAA
CCTGCACCCCACGGTGGGCGAGTACCCAGTCGACTACACGATGCACGCCG
AAAACCGCGCCAAGGTAATCGCCCGATTGCGCGAAACAGACGGGGTTGCC
CCGCGCGGCGCGCTGCTCTTCCGCGGCGGCCTCGCGGCGAACAGAGACGA
GACGGACCACGAGCCCGTGTTCCGGCAGGAATCGACCTTCCACTACTTGT
TCGGGGTGAGGGAGCCTGACTGCCTCGCGACGATCGACCTCGCGACGGGG
AAGGCGACTCTGTTCATCCCCAGGCTCCCGGCGGACTACGCCACCTGGAT
GGGCAACATCCTGCCGCCGAAGCACTTCCAGGTACGGCAGTTTTCAGCAG
TACAGTAG
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