mRNA_L-elsbetiae_contig7627.16551.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7627.16551.1
Unique NamemRNA_L-elsbetiae_contig7627.16551.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7627.16551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7627contigL-elsbetiae_contig7627:1250..1629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.4723482-UTR-L-elsbetiae_contig7627:1249..13021622816847.4723482-UTR-L-elsbetiae_contig7627:1249..1302Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7627 1250..1302 +
1691683858.4535713-UTR-L-elsbetiae_contig7627:1249..13021691683858.4535713-UTR-L-elsbetiae_contig7627:1249..1302Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7627 1250..1302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.4846706-CDS-L-elsbetiae_contig7627:1302..16291622816847.4846706-CDS-L-elsbetiae_contig7627:1302..1629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7627 1303..1629 +
1691683858.4635036-CDS-L-elsbetiae_contig7627:1302..16291691683858.4635036-CDS-L-elsbetiae_contig7627:1302..1629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7627 1303..1629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7627.16551.1prot_L-elsbetiae_contig7627.16551.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7627 1303..1629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7627.16551.1

>prot_L-elsbetiae_contig7627.16551.1 ID=prot_L-elsbetiae_contig7627.16551.1|Name=mRNA_L-elsbetiae_contig7627.16551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MTSGETESGIFGGVSDPCRPHPLKLFFLQDFLGQYFACCWLCLPSSTFSA
TSSVEVSKDILLCAVLEMFALALFAHKVERVVHNKFYFNKYRCRFFFALC
SEQTSRPF*
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mRNA from alignment at L-elsbetiae_contig7627:1250..1629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7627.16551.1 ID=mRNA_L-elsbetiae_contig7627.16551.1|Name=mRNA_L-elsbetiae_contig7627.16551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=380bp|location=Sequence derived from alignment at L-elsbetiae_contig7627:1250..1629+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCCCAAACCTCACTAGAAGTTAAGCGGTTTAGGTTTTTTTGACTTGA
AAAATGACTAGCGGGGAGACCGAATCTGGTATTTTCGGGGGGGTTTCAGA
CCCCTGTCGGCCGCACCCCCTTAAACTGTTTTTCTTGCAAGACTTCCTTG
GTCAATATTTCGCGTGTTGCTGGCTCTGTCTACCCTCCTCAACTTTTTCA
GCAACTTCTTCAGTTGAGGTCTCAAAAGACATACTGCTGTGTGCCGTCCT
CGAAATGTTTGCACTCGCGCTTTTCGCCCACAAAGTGGAGAGAGTTGTGC
ACAATAAGTTTTATTTTAATAAGTACCGCTGCCGCTTTTTTTTTGCGCTT
TGTAGCGAGCAGACGAGCAGACCCTTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7627:1250..1629+

>mRNA_L-elsbetiae_contig7627.16551.1 ID=mRNA_L-elsbetiae_contig7627.16551.1|Name=mRNA_L-elsbetiae_contig7627.16551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig7627:1250..1629+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTAGCGGGGAGACCGAATCTGGTATTTTCGGGGGGGTTTCAGACCC
CTGTCGGCCGCACCCCCTTAAACTGTTTTTCTTGCAAGACTTCCTTGGTC
AATATTTCGCGTGTTGCTGGCTCTGTCTACCCTCCTCAACTTTTTCAGCA
ACTTCTTCAGTTGAGGTCTCAAAAGACATACTGCTGTGTGCCGTCCTCGA
AATGTTTGCACTCGCGCTTTTCGCCCACAAAGTGGAGAGAGTTGTGCACA
ATAAGTTTTATTTTAATAAGTACCGCTGCCGCTTTTTTTTTGCGCTTTGT
AGCGAGCAGACGAGCAGACCCTTTTGAATGACTAGCGGGGAGACCGAATC
TGGTATTTTCGGGGGGGTTTCAGACCCCTGTCGGCCGCACCCCCTTAAAC
TGTTTTTCTTGCAAGACTTCCTTGGTCAATATTTCGCGTGTTGCTGGCTC
TGTCTACCCTCCTCAACTTTTTCAGCAACTTCTTCAGTTGAGGTCTCAAA
AGACATACTGCTGTGTGCCGTCCTCGAAATGTTTGCACTCGCGCTTTTCG
CCCACAAAGTGGAGAGAGTTGTGCACAATAAGTTTTATTTTAATAAGTAC
CGCTGCCGCTTTTTTTTTGCGCTTTGTAGCGAGCAGACGAGCAGACCCTT
TTGA
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