mRNA_L-elsbetiae_contig7625.16548.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7625.16548.1
Unique NamemRNA_L-elsbetiae_contig7625.16548.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7625.16548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7625contigL-elsbetiae_contig7625:3541..8598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size484
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.1450052-UTR-L-elsbetiae_contig7625:3540..35731622816847.1450052-UTR-L-elsbetiae_contig7625:3540..3573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7625 3541..3573 +
1691683858.2373798-UTR-L-elsbetiae_contig7625:3540..35731691683858.2373798-UTR-L-elsbetiae_contig7625:3540..3573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7625 3541..3573 +
1622816847.159273-UTR-L-elsbetiae_contig7625:3944..40061622816847.159273-UTR-L-elsbetiae_contig7625:3944..4006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7625 3945..4006 +
1691683858.2484105-UTR-L-elsbetiae_contig7625:3944..40061691683858.2484105-UTR-L-elsbetiae_contig7625:3944..4006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7625 3945..4006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.1742506-CDS-L-elsbetiae_contig7625:4006..41021622816847.1742506-CDS-L-elsbetiae_contig7625:4006..4102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 4007..4102 +
1691683858.264433-CDS-L-elsbetiae_contig7625:4006..41021691683858.264433-CDS-L-elsbetiae_contig7625:4006..4102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 4007..4102 +
1622816847.1840692-CDS-L-elsbetiae_contig7625:4613..46701622816847.1840692-CDS-L-elsbetiae_contig7625:4613..4670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 4614..4670 +
1691683858.2768795-CDS-L-elsbetiae_contig7625:4613..46701691683858.2768795-CDS-L-elsbetiae_contig7625:4613..4670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 4614..4670 +
1622816847.1937685-CDS-L-elsbetiae_contig7625:5562..56401622816847.1937685-CDS-L-elsbetiae_contig7625:5562..5640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 5563..5640 +
1691683858.2870934-CDS-L-elsbetiae_contig7625:5562..56401691683858.2870934-CDS-L-elsbetiae_contig7625:5562..5640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 5563..5640 +
1622816847.2034442-CDS-L-elsbetiae_contig7625:7094..71661622816847.2034442-CDS-L-elsbetiae_contig7625:7094..7166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 7095..7166 +
1691683858.2961814-CDS-L-elsbetiae_contig7625:7094..71661691683858.2961814-CDS-L-elsbetiae_contig7625:7094..7166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 7095..7166 +
1622816847.215907-CDS-L-elsbetiae_contig7625:8514..85981622816847.215907-CDS-L-elsbetiae_contig7625:8514..8598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 8515..8598 +
1691683858.3054485-CDS-L-elsbetiae_contig7625:8514..85981691683858.3054485-CDS-L-elsbetiae_contig7625:8514..8598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7625 8515..8598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7625.16548.1prot_L-elsbetiae_contig7625.16548.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7625 4007..8598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7625.16548.1

>prot_L-elsbetiae_contig7625.16548.1 ID=prot_L-elsbetiae_contig7625.16548.1|Name=mRNA_L-elsbetiae_contig7625.16548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MARRKQEGWDNNVDIDSIEGAANSVKTPDKKKFGLANRGVGGYDRDGNKM
TKARAGRGGGGGSSMRPVSSGPVRKLKEQPFFAPPLRKNGGRTQQQTQRN
PRAQPGQKTELQVVPAGTARRTGGQSKGP
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mRNA from alignment at L-elsbetiae_contig7625:3541..8598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7625.16548.1 ID=mRNA_L-elsbetiae_contig7625.16548.1|Name=mRNA_L-elsbetiae_contig7625.16548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5058bp|location=Sequence derived from alignment at L-elsbetiae_contig7625:3541..8598+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAACACTCGCGCGAGCAGAGATCAAACCACTGTGAGTACTCTAGTATC
TCTAGAGAAGAAATTCTTGGGTGGGTCTAGAGCTAGTCACGAGTCTCCAT
CGCTACGGTTGGCAAAGCTCGTTGACATCATGCTGCTTCCAAGCACGAGA
GAGAGGGCGAGTCCCACACAAACCATTTGCTCTCTCTCGCTCCAACCTTT
GTCTCTCGGGGTTGAGAGTTGTGCAACGTCCACACATGTTTTTCTTTTGT
TGTAAGGTTTTCCTTTCGCGGTACGAAGAGACCGGCGGCCGAGCCGCAGG
CTCACATCCCCGCCGATAACAATTGCTCCTTGTTGAAACTCAACGCCTGT
GATGTCAACTCCGTCTCGTTTGACTAAAAATCAACGTTTTGTTTCGTTGT
CTAGGACAAGACCTTCTTTCTCCAGAGGAGAGGAGGACACTGCTGCTGCT
GTGCGCCGACGATAGCATGGCCAGGCGGAAACAGGAAGGCTGGGACAATA
ATGTTGATATAGATAGCATTGAGGGTGCTGCCAATTCAGTCAAGACGCCG
GACAAAAAGAAGGTGGGGTTCAAACGGCAGTTATGGACATGGTCATCGTA
CAATGTGATGTACCCGGAGAGTATCTTATGGGACCATTGAAGCACGCTCG
TGGCACCGCTGCTGCGTGTACAGCAGTAGCCGTGTGGTCGGCAGATGAAG
TGAGATACCGAATCAGAGAGGATGCCCTGCGTGCCCATGGCATTACACGC
ACCATATACATAGGTATGTTCGTCAACATGCAAATCCGTCGTACACATAT
TCCCGTCTTTCTCAAGTCAGATTGTGCCTGTCAATCGATGTACGTAAGTA
CATATCAGATGGCAGCAGTGGCGCACTAGGAGCAGCAGCATCTTCTACTG
CTGCACTTGCTGCTGAGCGGCGAGGCCCCTGGATTATTAGTAGAAGTAAT
AGTGTCCCATACGGTGCTGGAACATTTCGTTGAAATGGAGGCATTAAATC
CCAAGAAAGGGGCATGATCTCACCACCCCCCCCCCACACACACACTTCTC
GTTTCGGCTCCACAATATTTCAGTTCGGACTGGCGAATCGAGGCGTTGGA
GGGTACGACAGAGACGGCAACAAAATGACGGTGCGTTTCTAGTCCCACCC
TCCCCTCCCCTCGATCGAGAGAGGGAGGGAGGAGGAGGGACTGCGGGTGG
CGTCTTGAAAGCCAGTTCCATGTTTTTGCCGCTCGGGTGCGGAGCAGAGA
CGGGGGTCCCGTATGTGATGTACTTGGGCGGGGACATTGCTTGCCCAAAT
GTGCTGTCACGGCGTCTAGGGACGCCAATCCACTTAAAAAATCAAGATTA
CCACTGCCTTCTCGTGTCGTACCAAATTATGTAGCCTCCATCCCCAAGCG
CCTTTCGCCCCGGCGTGCGTAGGTATACGAAAACTCTTCGGTGGGCGGTG
GTGCTGGACGAAGTCGCCGATTCCGCGCGATTCTGGCGAAAAAGTTGTCA
AAATGTTGCCTTTCTTGCTCCTCGATGAAAAATCAAACTTGAAGTCTGCC
AAAATGAGGAGATCTAGATACCTCTGGACGAGAGCTTCAACTGTTCTCGA
GGTGCTCCCAGGCACGATTCCGAGCTCTTGGCGATGAAAAGTGCCCGACA
ATAGAGAAAAGCAACTTTTCTCAAAATAAACTTTGTGCTCCCATAAAAAC
CGGTGTACAAAAGAGTCTTAATGAGCCGTCCATTTCAACAAAACTAAAGA
TGCCACACCATCAGTAGGTTGCGCGTCTGTGCTCGGCCGGTTGTGTTGGC
ACGCGCGCCCCTTCGCGCGGAACACCACGCTCCCCCACCCTTATATATCT
GCGGAACTCCCAGGTTGAAAAGCCAAGATCCCCCCCAAGCGGGGGAAGTA
AATACAGGTCCGTCCGTACGTTCGTATCTATTTACATGAGAGGGTGTATC
TGGCTTGCTCGCCTGTTTGCACGTTTGGGTAGTCACTTCTCACCACCCCC
CCCCCCCGATTGACGTGCGCAGAAGGCACGAGCGGGGAGAGGAGGCGGGG
GAGGGTCCAGCATGCGACCTGTCTCCTCGGGACCCGTGCGCAAATTAAAG
GTGCGTCCTGCCTGCATTCAAAAGTGGCATCAAATGGGATGATCGTACAC
ATGTAGTATACCGTAGATGACACGAGATACCACCACCCCCCCATGGACAG
CTTTTCAAAGCTAGGTTCCTCCCCAGCAAGAGGAATTTCAGTCAGTGCCG
AAAGGGGGTGGCGTTGGAAAGATCTAATCGAGGGCTGTCCGAAAATATGT
CGTTTAAATAGTGCTGGCACCCTCTTCGTTACGGAGTACTGGAGAGCTCT
AAAAGTCGGTCCAGGGGGGGGATGATGGTGTCTTGTGTCTTCTACGGTGT
ATACAAAGTCTTGCGCTTATCGTGGTAGTCTTACGCAGGTTTTTGGTCGG
CGAAACATATGGGATAAAGTATGGAATCGGGGAATGTTTGGGGGGTCGGT
GGTTAGGGTTAGGGTCAGGGTTAAGGGTTACGGAACCCCTACTACTCTAT
TTCACATATAAACCAATGTTCCCCGTTTTTTCTCGCGAAGGCAGTCCCGT
TATCGTTCGTTCTGGCGATTTTTTTGTTGCCTTTTACGCTGGCCGTTCCA
TGTCGATGGGGGGAAGAGAGCACGTACTGTCGGTGACACAAGATACCACA
CCCCCTGGACCGGCTTTTAGAGCTCCATTACTCCGTAACAAAGAGGGTGC
CAGCACCAAACGACACATTTTCGGACAGCCCTCGACTAGATCTTTCCAAC
GCCACCCCTTTCGGCACTGGGACTCTTCTTGCTGCGGAGGAATCGAGCTT
TGAAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATGTAT
TTCGTGCGAAAGTTGTTGGATCCGCCAGCAGAGGCACAACGGGCGAGGCA
GCTGTCGCAGGATGTAGAGCCGAGAGTGGGCTCGTGCATGGGAAGCACGG
CGTCTACCGCTGGGTCACGGGTACGAGTCTGAGGTACAGGCAGGAGGCTC
ATGCTCTCAAAGGGTGCTACTCTTGGAAACATGAAAAAACTTGGTTGCGG
GGAGGGAGTCGAAACAAACTCCTTTGGGCATACATCCATATGAAGGAGTG
TGTTTTGTAACCGACGCAAGCTTCTAAGCCCCCCAAAAACAAGTTTTGTA
CACCGCCGACATTCGTGAGACGTTTGTTTGAAACAAGACCCTCTGTGTGC
TTGTTTGTTGTTCCACGCGTTGCCAAGAAAGCGGCAGCAGCAACGGCTCG
CCGCGCAGGGGTGACGTGCATTCAGCACTAGTTGTACACCTTCGCCCTCA
ACGGTTGTCAAGTCAACCCGTGTACCCAAGCCCAACCACAGCATCCTGCC
CTGCCCTGCCTGCCCTGCCCCACCCATTCCAACCGAGCGCCCCCAAGTCT
ACACTTCGACCTTTCAACCCAGCCTCAAGAAGATCCTGTATAATAGCCTA
CCCGATTCAACTTGACCCGACCCACTCGCACCCACGTCACCCGCGTCGCT
GCAGGAGCAGCCCTTCTTTGCACCTCCATTGAGAAAGAACGGTGGAAGAA
CGCAGCAGCAAACACAGAGAAATCCCGTAAGTGCGACCTTACCACCTAGC
TCCTGGTGCAAATGATGTGCTGAGTTTGGTCAAGCCGCCGCACGTACATA
TGTATCGTATATACGTCGATGGCCGAGACAGCGAGTCGTGTGTTCTACCG
CCGTTTTCTACCGTGAAAACCCCTTGTTCATAGCCCTGGAGAGGGATATC
ATAGGTTACCGCAGGTGACACAAGATACCACACCCCCTGGACCGACTTTT
AGAGCTCTCCAGTACTCCGTAATCAAGAGGATACCGGCACCAAACGACAC
ATTTTCGGACAGCCCTGGACTAGATATTTCCAACGCCACCCCCCCTCTCG
GCACTGGCACTCTTCTGCTGGGGAGGAATCGAGGTTTTGAAAATCTGTCC
AGGGGGTGTCACCTACGGTAGGCTTGGCCTTGGTTGCAGCGCTTGAGGGG
CAGGAAAGAGATAGGGGTCGCCAATGGTGGATCACCTCAAGGAAGGTGAC
GTTCTCCACTGAAGAGTGAGGGCGCGAGGAGAACATGCCTCCTCCGTCGC
GTACCTTGGACATTTATCTAAGACATTTATCCAAGCTCTTCGGAAAAGTT
TCCTCGAGACCTTGTGTTCAATTTTGCACGGGTAGCTCCACGCTGGTATA
TAGTTGGATGCATAGCATTTAGAGATACTGCTGGACCTCGTGCCGAGTTT
TTCCTGGGATCTTGGAAGCGTCGCTCCACACGCGAGAACCAAGACAATTC
GGCATGCTCGCGTCACTGGTGACAATGTTGTGTTGTACATTTTTGTGTTT
GTTTTTTTCTTTGCCGCCCGTTATTGGCATATTTGTCGTCTGCCCCACTG
GTCCCCTTCCTCCACTACGACTAGCTAGACGACCCAACCGGGGGATCACA
CAGGAGGGGGGGGGGGGGGGCGAGTGGACCCCTTCCTGCGGTGCCTGCCT
GTGATGTTTTTATCGCGAGCAGGGTTCAGCACTCCCCACCCTCGTCAACA
ATGATGTCGAAGTAATATTTACTCTACATGTGTATGATGTATGTGTATGA
TGTATAACGCGCGACCAGGAAGAAAGTTGGTAGACACGCCCCTACACAAT
GCTGATAATATTATTGTTGTTGCTGTCGTTGTTGTTGTTATCACATTAAC
TCCGTGCCGATCTCTGCCAGCACCAAACGACACATTTTCGGACCGCCCTC
GACTAGACCTCTCCAACGCCACCCCCTTTAGGCGCTGGCCTCTTGCTGCG
GAGGAGTCGAGGTTTGAAAATCTATCTACGGGGTGTGGTATCTTGTGTCG
CCTACATCCAGTGCCTTTCTCTCGGTGCTCGTTCTTATGTCTCGCCCTCG
TCTGCAACTGTTTTTCTCATGTAGCGCGCCCAGCCAGGGCAGAAGACCGA
GCTCCAAGTGGTCCCAGCAGGCACCGCGAGGAGGACCGGAGGGCAGTCGA
AGGGCCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7625:3541..8598+

>mRNA_L-elsbetiae_contig7625.16548.1 ID=mRNA_L-elsbetiae_contig7625.16548.1|Name=mRNA_L-elsbetiae_contig7625.16548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig7625:3541..8598+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAGGCGGAAACAGGAAGGCTGGGACAATAATGTTGATATAGATAG
CATTGAGGGTGCTGCCAATTCAGTCAAGACGCCGGACAAAAAGAAGATGG
CCAGGCGGAAACAGGAAGGCTGGGACAATAATGTTGATATAGATAGCATT
GAGGGTGCTGCCAATTCAGTCAAGACGCCGGACAAAAAGAAGTTCGGACT
GGCGAATCGAGGCGTTGGAGGGTACGACAGAGACGGCAACAAAATGACGT
TCGGACTGGCGAATCGAGGCGTTGGAGGGTACGACAGAGACGGCAACAAA
ATGACGAAGGCACGAGCGGGGAGAGGAGGCGGGGGAGGGTCCAGCATGCG
ACCTGTCTCCTCGGGACCCGTGCGCAAATTAAAGAAGGCACGAGCGGGGA
GAGGAGGCGGGGGAGGGTCCAGCATGCGACCTGTCTCCTCGGGACCCGTG
CGCAAATTAAAGGAGCAGCCCTTCTTTGCACCTCCATTGAGAAAGAACGG
TGGAAGAACGCAGCAGCAAACACAGAGAAATCCCGAGCAGCCCTTCTTTG
CACCTCCATTGAGAAAGAACGGTGGAAGAACGCAGCAGCAAACACAGAGA
AATCCCCGCGCCCAGCCAGGGCAGAAGACCGAGCTCCAAGTGGTCCCAGC
AGGCACCGCGAGGAGGACCGGAGGGCAGTCGAAGGGCCCACGCGCCCAGC
CAGGGCAGAAGACCGAGCTCCAAGTGGTCCCAGCAGGCACCGCGAGGAGG
ACCGGAGGGCAGTCGAAGGGCCCA
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