mRNA_L-elsbetiae_contig7622.16547.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7622.16547.1
Unique NamemRNA_L-elsbetiae_contig7622.16547.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7622.16547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7622contigL-elsbetiae_contig7622:6340..6734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.0979178-CDS-L-elsbetiae_contig7622:6339..66481622816847.0979178-CDS-L-elsbetiae_contig7622:6339..6648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7622 6340..6648 +
1691683858.2112596-CDS-L-elsbetiae_contig7622:6339..66481691683858.2112596-CDS-L-elsbetiae_contig7622:6339..6648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7622 6340..6648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.1108637-UTR-L-elsbetiae_contig7622:6648..67341622816847.1108637-UTR-L-elsbetiae_contig7622:6648..6734Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7622 6649..6734 +
1691683858.2262516-UTR-L-elsbetiae_contig7622:6648..67341691683858.2262516-UTR-L-elsbetiae_contig7622:6648..6734Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7622 6649..6734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7622.16547.1prot_L-elsbetiae_contig7622.16547.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7622 6340..6648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7622.16547.1

>prot_L-elsbetiae_contig7622.16547.1 ID=prot_L-elsbetiae_contig7622.16547.1|Name=mRNA_L-elsbetiae_contig7622.16547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
CVDDRKAVQEKPTHTLYTLKVDTKSKNAPKFYTPSAAAPLTPRPLRRARK
RFRVFGPAGCILTVDSKHTTLWKEYARQHHHRPNIKYWGCFRSPSAAAGK
TS*
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mRNA from alignment at L-elsbetiae_contig7622:6340..6734+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7622.16547.1 ID=mRNA_L-elsbetiae_contig7622.16547.1|Name=mRNA_L-elsbetiae_contig7622.16547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=395bp|location=Sequence derived from alignment at L-elsbetiae_contig7622:6340..6734+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGTAGACGATCGCAAGGCGGTGCAAGAAAAACCAACCCACACGCTGTA
TACACTAAAAGTTGACACTAAGAGTAAAAACGCCCCGAAATTTTACACGC
CATCAGCGGCGGCGCCGCTCACACCACGCCCTCTGCGCAGGGCCCGAAAA
AGGTTTCGCGTTTTTGGCCCAGCTGGATGCATATTGACGGTCGACAGCAA
ACATACTACCCTGTGGAAGGAATACGCTCGGCAACATCACCACCGGCCAA
ACATAAAATACTGGGGCTGCTTTCGAAGCCCGTCGGCCGCCGCTGGTAAA
ACCAGCTAGGCAGGCCGCCAGCCAATCAACCAGCACGATCTGAGGGAGCA
CCAACGCCATAGCTACCTAACCCTCTGAGCCCCCTCCTACCTTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7622:6340..6734+

>mRNA_L-elsbetiae_contig7622.16547.1 ID=mRNA_L-elsbetiae_contig7622.16547.1|Name=mRNA_L-elsbetiae_contig7622.16547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig7622:6340..6734+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGTAGACGATCGCAAGGCGGTGCAAGAAAAACCAACCCACACGCTGTA
TACACTAAAAGTTGACACTAAGAGTAAAAACGCCCCGAAATTTTACACGC
CATCAGCGGCGGCGCCGCTCACACCACGCCCTCTGCGCAGGGCCCGAAAA
AGGTTTCGCGTTTTTGGCCCAGCTGGATGCATATTGACGGTCGACAGCAA
ACATACTACCCTGTGGAAGGAATACGCTCGGCAACATCACCACCGGCCAA
ACATAAAATACTGGGGCTGCTTTCGAAGCCCGTCGGCCGCCGCTGGTAAA
ACCAGCTAGTGCGTAGACGATCGCAAGGCGGTGCAAGAAAAACCAACCCA
CACGCTGTATACACTAAAAGTTGACACTAAGAGTAAAAACGCCCCGAAAT
TTTACACGCCATCAGCGGCGGCGCCGCTCACACCACGCCCTCTGCGCAGG
GCCCGAAAAAGGTTTCGCGTTTTTGGCCCAGCTGGATGCATATTGACGGT
CGACAGCAAACATACTACCCTGTGGAAGGAATACGCTCGGCAACATCACC
ACCGGCCAAACATAAAATACTGGGGCTGCTTTCGAAGCCCGTCGGCCGCC
GCTGGTAAAACCAGCTAG
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