mRNA_L-elsbetiae_contig7620.16545.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7620.16545.1
Unique NamemRNA_L-elsbetiae_contig7620.16545.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7620.16545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7620contigL-elsbetiae_contig7620:6115..7133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size762
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7620.16545.1prot_L-elsbetiae_contig7620.16545.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7620 6129..6913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.897963-UTR-L-elsbetiae_contig7620:6114..61281622816846.897963-UTR-L-elsbetiae_contig7620:6114..6128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7620 6115..6128 +
1691683858.0942252-UTR-L-elsbetiae_contig7620:6114..61281691683858.0942252-UTR-L-elsbetiae_contig7620:6114..6128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7620 6115..6128 +
1622816846.9348252-UTR-L-elsbetiae_contig7620:6913..71331622816846.9348252-UTR-L-elsbetiae_contig7620:6913..7133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7620 6914..7133 +
1691683858.1249218-UTR-L-elsbetiae_contig7620:6913..71331691683858.1249218-UTR-L-elsbetiae_contig7620:6913..7133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7620 6914..7133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.909-CDS-L-elsbetiae_contig7620:6128..64341622816846.909-CDS-L-elsbetiae_contig7620:6128..6434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 6129..6434 +
1691683858.1041381-CDS-L-elsbetiae_contig7620:6128..64341691683858.1041381-CDS-L-elsbetiae_contig7620:6128..6434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 6129..6434 +
1622816846.9234383-CDS-L-elsbetiae_contig7620:6691..69131622816846.9234383-CDS-L-elsbetiae_contig7620:6691..6913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 6692..6913 +
1691683858.113783-CDS-L-elsbetiae_contig7620:6691..69131691683858.113783-CDS-L-elsbetiae_contig7620:6691..6913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 6692..6913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7620.16545.1

>prot_L-elsbetiae_contig7620.16545.1 ID=prot_L-elsbetiae_contig7620.16545.1|Name=mRNA_L-elsbetiae_contig7620.16545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MLWVTARVAATLYFYVWAASKSSNQAHRWINPHQSEQQAKLQVTDLAVDV
HMVPGTQVADGGCAPPGTQVADGGCAPKAGKLALETPVGLDKFPSGATTL
HAAGEDLEARTPADSATPLHLAAQDGQLDVDSGSGGGSTGGVQAVSFTER
TGGDAPSLEEEEDMVKLAPMCNEVS*
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mRNA from alignment at L-elsbetiae_contig7620:6115..7133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7620.16545.1 ID=mRNA_L-elsbetiae_contig7620.16545.1|Name=mRNA_L-elsbetiae_contig7620.16545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1019bp|location=Sequence derived from alignment at L-elsbetiae_contig7620:6115..7133+ (Laminarionema elsbetiae ELsaHSoW15)
TTATCCCGGTGAACATGTTATGGGTGACGGCCAGGGTTGCCGCCACGCTA
TATTTTTACGTGTGGGCGGCGAGCAAATCTTCCAACCAGGCGCACAGGTG
GATCAACCCCCACCAATCGGAACAACAGGCGAAGCTGCAAGTCACCGACC
TTGCCGTCGACGTCCACATGGTGCCCGGCACTCAGGTTGCCGATGGCGGT
TGCGCACCGCCCGGCACTCAGGTTGCCGATGGCGGTTGCGCACCAAAGGC
GGGGAAACTGGCCTTGGAAACGCCCGTGGGGCTTGATAAGTTCCCATCAG
GCGCGACTACCCTGCACGCGGTGAGTGGAACAAAAGTACAGCAAGCAGCA
AAGAAAGGAGTACAGTAGATCCTATAACGAGATCGTCTATTTGATGTCTG
ATGAGCCCGTCAACTACCTCTCCAGTTTTGTTGTCGTCATATGTACCCAT
GAAGAGGGTATCTAGACGTGAGTGACCTGTGGGGAGAGAGAGCACATTTC
ACATCTCCACATCAACGGCTATGCAGCTTTTGCCGCTAAGACGAACACCG
CGCCGTGACCATTGTCCTTTCGTCCAGGCCGGCGAAGATCTGGAAGCGAG
GACCCCCGCCGACAGTGCCACACCGCTTCATCTGGCTGCACAAGACGGGC
AGTTGGATGTAGACAGCGGTTCAGGAGGCGGGAGTACAGGAGGAGTGCAA
GCTGTTTCTTTTACGGAGAGGACCGGCGGCGATGCACCATCTCTCGAGGA
AGAAGAGGACATGGTGAAACTGGCTCCGATGTGCAATGAGGTATCATAAC
AAGGTAGCGCGGGTTGTTCAACGTGATAGCACGTCGCTGTTGTTGGTTGT
TGGCTGTCCGTTTCAAAGATGTGCTTATTATTCCTTCACGTTATAGGCTA
GGGTCGATGGCGCCGCCGTACGCGAACGGCATATATAGACTATGGTACTT
GCGGTAAGGCGCCTGTTGGTTCCTTCGCTGGTGACGTGCGTTACACACCT
GGTTGGATTGAGGATGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7620:6115..7133+

>mRNA_L-elsbetiae_contig7620.16545.1 ID=mRNA_L-elsbetiae_contig7620.16545.1|Name=mRNA_L-elsbetiae_contig7620.16545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig7620:6115..7133+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTATGGGTGACGGCCAGGGTTGCCGCCACGCTATATTTTTACGTGTG
GGCGGCGAGCAAATCTTCCAACCAGGCGCACAGGTGGATCAACCCCCACC
AATCGGAACAACAGGCGAAGCTGCAAGTCACCGACCTTGCCGTCGACGTC
CACATGGTGCCCGGCACTCAGGTTGCCGATGGCGGTTGCGCACCGCCCGG
CACTCAGGTTGCCGATGGCGGTTGCGCACCAAAGGCGGGGAAACTGGCCT
TGGAAACGCCCGTGGGGCTTGATAAGTTCCCATCAGGCGCGACTACCCTG
CACGCGATGTTATGGGTGACGGCCAGGGTTGCCGCCACGCTATATTTTTA
CGTGTGGGCGGCGAGCAAATCTTCCAACCAGGCGCACAGGTGGATCAACC
CCCACCAATCGGAACAACAGGCGAAGCTGCAAGTCACCGACCTTGCCGTC
GACGTCCACATGGTGCCCGGCACTCAGGTTGCCGATGGCGGTTGCGCACC
GCCCGGCACTCAGGTTGCCGATGGCGGTTGCGCACCAAAGGCGGGGAAAC
TGGCCTTGGAAACGCCCGTGGGGCTTGATAAGTTCCCATCAGGCGCGACT
ACCCTGCACGCGGCCGGCGAAGATCTGGAAGCGAGGACCCCCGCCGACAG
TGCCACACCGCTTCATCTGGCTGCACAAGACGGGCAGTTGGATGTAGACA
GCGGTTCAGGAGGCGGGAGTACAGGAGGAGTGCAAGCTGTTTCTTTTACG
GAGAGGACCGGCGGCGATGCACCATCTCTCGAGGAAGAAGAGGACATGGT
GAAACTGGCTCCGATGTGCAATGAGGTATCATAAGCCGGCGAAGATCTGG
AAGCGAGGACCCCCGCCGACAGTGCCACACCGCTTCATCTGGCTGCACAA
GACGGGCAGTTGGATGTAGACAGCGGTTCAGGAGGCGGGAGTACAGGAGG
AGTGCAAGCTGTTTCTTTTACGGAGAGGACCGGCGGCGATGCACCATCTC
TCGAGGAAGAAGAGGACATGGTGAAACTGGCTCCGATGTGCAATGAGGTA
TCATAA
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