mRNA_L-elsbetiae_contig7617.16539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7617.16539.1
Unique NamemRNA_L-elsbetiae_contig7617.16539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7617.16539.1 vs. uniprot
Match: D7G3A2_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A2_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.370e-33
Identity = 74/143 (51.75%), Postives = 85/143 (59.44%), Query Frame = 1 
Query:    4 LGTAKQQCYGHRGGDIFPYDTITNVITPQFTFYGKKKPTTSQNRALARLFSPRENALPFIYDNFDCARRWHRLPARAHQDLDFSDFFDTETMKSGPKGSAAS-YIRGEKARPRARTLTSSGRYSHRSLDFAPPAAAQAYFLFR 429
            + T    C GHRG DIFPYD +T+VITPQFTFYGKK P T +NR L +LF P ENALPFIYDNF+    W       +   DFSDFFDT TMKSGPKG+AAS   + E  R     L   G   H    F PP A +   + R
Sbjct:  472 ISTRSDTCNGHRGSDIFPYDIMTDVITPQFTFYGKKAPNTMKNRMLIKLFDPSENALPFIYDNFE----WSHCSEMGY---DFSDFFDTSTMKSGPKGTAASDEEKSESTRVEGFGLFKQGDI-HLQPGFDPPVAVKKILVER 606
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BLAST of mRNA_L-elsbetiae_contig7617.16539.1 vs. uniprot
Match: A0A6H5K0B2_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.280e-32
Identity = 71/140 (50.71%), Postives = 85/140 (60.71%), Query Frame = 1 
Query:    4 LGTAKQQCYGHRGGDIFPYDTITNVITPQFTFYGKKKPTTSQNRALARLFSPRENALPFIYDNFDCARRWHRLPARAHQDLDFSDFFDTETMKSGPKGSAASYIRGEKARPRARTLTSSGRYS----HRSLDFAPPAAAQ 411
            + T    C GHRG DIFPY  +++VITPQFTFYGKK P T QNR L +LF P ENALPFIYDNF+    W       +   DFSDFFDT TMKSGPKG+AAS    E+ + +   +   G +     H    F PPAA +
Sbjct:  637 ISTRSDTCNGHRGSDIFPYGIMSDVITPQFTFYGKKAPNTMQNRMLIKLFDPSENALPFIYDNFE----WSHCSEMGY---DFSDFFDTSTMKSGPKGTAAS----EEEKSKTTRVEGFGLFEKGDIHLQPGFDPPAAVK 765
[Close]
BLAST of mRNA_L-elsbetiae_contig7617.16539.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.880e-7
Identity = 39/115 (33.91%), Postives = 53/115 (46.09%), Query Frame = 1 
Query:   16 KQQCYGHRGGDIFPYDTITNVITPQFTFYG-KKKP----TTSQNRALARLFSPRENALPFIYDNFDCARRWHRLPARAHQDLDFSDFF----DTETMKS-GPKGSAASYIRGEKA 330
             ++C GHRG D+FP+D + N +       G K  P     T  NR +   F PR NALP++YD F+ A         A    D  D +    D E  +  GP G A S  +G +A
Sbjct:  623 SEECLGHRGSDVFPFDILANEVNDFTVQTGIKGSPLGGGNTMTNREVLAAFDPRINALPYVYDTFEWAHC-------AEDGFDLRDAWLAKGDEEASRGEGPGGQAMSAKKGPRA 730
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7617.16539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3A2_ECTSI2.370e-3351.75Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K0B2_9PHAE1.280e-3250.71TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J676_9PHAE5.880e-733.91TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7617contigL-elsbetiae_contig7617:1935..2752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size432
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7617.16539.1prot_L-elsbetiae_contig7617.16539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7617 1966..2752 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.5401185-UTR-L-elsbetiae_contig7617:1934..19651622816846.5401185-UTR-L-elsbetiae_contig7617:1934..1965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7617 1935..1965 -
1691683857.8163474-UTR-L-elsbetiae_contig7617:1934..19651691683857.8163474-UTR-L-elsbetiae_contig7617:1934..1965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7617 1935..1965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.5520928-CDS-L-elsbetiae_contig7617:1965..21851622816846.5520928-CDS-L-elsbetiae_contig7617:1965..2185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7617 1966..2185 -
1691683857.826244-CDS-L-elsbetiae_contig7617:1965..21851691683857.826244-CDS-L-elsbetiae_contig7617:1965..2185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7617 1966..2185 -
1622816846.565898-CDS-L-elsbetiae_contig7617:2540..27521622816846.565898-CDS-L-elsbetiae_contig7617:2540..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7617 2541..2752 -
1691683857.8352227-CDS-L-elsbetiae_contig7617:2540..27521691683857.8352227-CDS-L-elsbetiae_contig7617:2540..2752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7617 2541..2752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7617.16539.1

>prot_L-elsbetiae_contig7617.16539.1 ID=prot_L-elsbetiae_contig7617.16539.1|Name=mRNA_L-elsbetiae_contig7617.16539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
FLGTAKQQCYGHRGGDIFPYDTITNVITPQFTFYGKKKPTTSQNRALARL
FSPRENALPFIYDNFDCARRWHRLPARAHQDLDFSDFFDTETMKSGPKGS
AASYIRGEKARPRARTLTSSGRYSHRSLDFAPPAAAQAYFLFR*
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mRNA from alignment at L-elsbetiae_contig7617:1935..2752-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7617.16539.1 ID=mRNA_L-elsbetiae_contig7617.16539.1|Name=mRNA_L-elsbetiae_contig7617.16539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=818bp|location=Sequence derived from alignment at L-elsbetiae_contig7617:1935..2752- (Laminarionema elsbetiae ELsaHSoW15)
TTCCTGGGGACGGCGAAACAACAATGCTACGGCCACCGGGGTGGCGACAT
CTTTCCGTACGACACCATTACGAACGTGATAACTCCGCAGTTCACCTTCT
ACGGCAAAAAAAAACCCACCACGAGCCAAAACCGAGCGCTGGCCAGGCTC
TTCAGCCCCAGGGAGAACGCGCTGCCCTTCATCTACGACAACTTCGACTG
TGCTCGGAGATGGTGAGCCGGGGTGTGGGTTTCCCCCCTCGCGGTCAGGC
GCCTGTGCTTTTTTTCTGGGTCATCTCCAAGGCATCGAGCAGCAACTTGA
GCACAGCATCATTATCAGCATGTAGCATGGGCGGACTCCATGCTTTTCTT
GTCGCTTTGCTGTATTTTGTCCCTACGTGCCTCGGGCGTTGGCGGCTGCG
TTTCTATAGCCGTCGATTTGGTCTTGCTTGTGCGCTTGCTTGGCAGAAAG
CTAAACGGCACAGTAGTACTTGTATCTTGTTTTTTTTGTTATGCCACAAA
TGATTGTTCTCTTTCGTCGTCTCGTCTTTCGGTGACTCTTCTTTCCTGCA
CCACTCGACGTGAATAGGCATCGGTTGCCTGCGCGCGCACACCAGGACCT
CGACTTCTCTGACTTCTTCGACACCGAGACCATGAAATCCGGCCCCAAGG
GCAGTGCGGCCTCCTACATAAGAGGAGAAAAAGCCAGGCCGCGTGCACGG
ACTTTGACTTCGAGTGGGCGATACTCCCACCGTTCGCTGGACTTCGCCCC
CCCCGCCGCGGCTCAGGCCTATTTTTTGTTCAGATAGATACTCTTGGCCA
CACATCTAGTGCGCACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7617:1935..2752-

>mRNA_L-elsbetiae_contig7617.16539.1 ID=mRNA_L-elsbetiae_contig7617.16539.1|Name=mRNA_L-elsbetiae_contig7617.16539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig7617:1935..2752- (Laminarionema elsbetiae ELsaHSoW15)
TTCCTGGGGACGGCGAAACAACAATGCTACGGCCACCGGGGTGGCGACAT
CTTTCCGTACGACACCATTACGAACGTGATAACTCCGCAGTTCACCTTCT
ACGGCAAAAAAAAACCCACCACGAGCCAAAACCGAGCGCTGGCCAGGCTC
TTCAGCCCCAGGGAGAACGCGCTGCCCTTCATCTACGACAACTTCGACTG
TGCTCGGAGATGTTCCTGGGGACGGCGAAACAACAATGCTACGGCCACCG
GGGTGGCGACATCTTTCCGTACGACACCATTACGAACGTGATAACTCCGC
AGTTCACCTTCTACGGCAAAAAAAAACCCACCACGAGCCAAAACCGAGCG
CTGGCCAGGCTCTTCAGCCCCAGGGAGAACGCGCTGCCCTTCATCTACGA
CAACTTCGACTGTGCTCGGAGATGGCATCGGTTGCCTGCGCGCGCACACC
AGGACCTCGACTTCTCTGACTTCTTCGACACCGAGACCATGAAATCCGGC
CCCAAGGGCAGTGCGGCCTCCTACATAAGAGGAGAAAAAGCCAGGCCGCG
TGCACGGACTTTGACTTCGAGTGGGCGATACTCCCACCGTTCGCTGGACT
TCGCCCCCCCCGCCGCGGCTCAGGCCTATTTTTTGTTCAGATAGGCATCG
GTTGCCTGCGCGCGCACACCAGGACCTCGACTTCTCTGACTTCTTCGACA
CCGAGACCATGAAATCCGGCCCCAAGGGCAGTGCGGCCTCCTACATAAGA
GGAGAAAAAGCCAGGCCGCGTGCACGGACTTTGACTTCGAGTGGGCGATA
CTCCCACCGTTCGCTGGACTTCGCCCCCCCCGCCGCGGCTCAGGCCTATT
TTTTGTTCAGATAG
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