mRNA_L-elsbetiae_contig7614.16536.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7614.16536.1 vs. uniprot
Match: A0A6H5KQB6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQB6_9PHAE) HSP 1 Score: 635 bits (1638), Expect = 5.630e-214 Identity = 367/584 (62.84%), Postives = 421/584 (72.09%), Query Frame = 1 Query: 1 MGDAPSCTAPGEDGGDXXXXXXXXXXXVVCSGWTWSCASGRRRDIPISSMHPCEITHPSEPPSQA--GDNXXXXXXXX-----AQAIPRMNV--SENCVPSSFGIGMMFITVAAQGGLDTSFSVMASFVGKHIVLVSGVPQHAVTSPMIPCGSATQTSSGPCSATYETSSVMQEAMFTFRADANSDAALTGFSLSLLPEC-PTPCGGEAPCPSGCPDRPAKVYVKSCLEGLCQPGDRFPSMGNSDKEFEVSTARGSIFIADAPGSASEGVFCVDSLRLGHQGSCIFYIAVTAGGADDPPMELTAMADIPHGVSLVVPCVGDDSLPDGVIVAPTHRLPRSGMKLYELCAKEGADFQVSVESCRGEPELFVGET-------STAQGDD--WEYNSNGAMICTNLPPPQSTGKRRCVPPPGGFPQKDVSLIVKATDLPGGA---GARTYFVGVGMRRGQRAEDQEHLLRVNLVGEGGVRTSPALMVKTLPSVPANVPSRAAVGGGEATVEWGGSLLYTPKLSGRHAHESELRDCGFYCSFEVFAVPKRLRGDFRQTPCGLESLQNRYKTDVVYSFVGTPKVAGEVTR 1686 MG PSC AP E+GG+XXXXXXXXXXX VCSGWTWSC SG RR+IPIS +HPC++ A GD XXXXXXXX + +P NV S+ C PSSFG+GMMF+TV AQGG+D SFSVMAS VGKH+ LV+GVPQHAVTSPM+PCG A QT GPCSA YETSSVMQEA+F F+ A S AA TGFSLSL+PEC P CGG C SGCP RPAKVYVKSC E C P DRFPS G+ DKEFEVS+A GS+FIAD GSA +GVFCV S G C++YIAVTAGGAD+P M+LTA AD+P GVSLVVPC+GD SLPDG+IV P +R+P SGMKLYELC+K DFQVSVESCRGE ELFV + S G+ + Y S+G M+CT Q T +C P G K+VS+ V+A G + TYFVGVGMR GQRAEDQEHLLRV ++GE GV SP+L K LPS + SRA VGG EATVEWGG+ L+TPKLSGRH HE+E RDCG YCS+EV+AVP RL+G+F T CGLESL NR K DVVY FVG K GEVT+ Sbjct: 403 MGATPSCAAP-EEGGEXXXXXXXXXXXXVCSGWTWSCTSGGRRNIPISHLHPCDVLDEQHQGDSAEGGDXXXXXXXXXXXXXXGEGVPTSNVEVSDKCAPSSFGVGMMFMTVVAQGGMDASFSVMASLVGKHVTLVTGVPQHAVTSPMVPCGEAKQTEQGPCSAEYETSSVMQEALFVFKVGAGSVAATTGFSLSLVPECAPGSCGGPT-CASGCPRRPAKVYVKSCPEDKCLPEDRFPSQGSRDKEFEVSSADGSVFIADGRGSAGDGVFCVPSKH----GDCVYYIAVTAGGADEPAMQLTATADVPTGVSLVVPCIGDSSLPDGMIVNPANRVPLSGMKLYELCSKGEVDFQVSVESCRGEVELFVCDDTCPGLYPSKKPGERMVYTYMSDGKMVCTKHQ--QDT---QCHTPSGSDRNKEVSVTVEAGHPEEGTITTRSSTYFVGVGMRPGQRAEDQEHLLRVKVMGEEGVPVSPSLSAKFLPS--GSDASRAVVGGREATVEWGGATLHTPKLSGRHPHEAEDRDCGIYCSYEVYAVPTRLKGEFPHTACGLESLSNRLKMDVVYKFVGNAKNPGEVTQ 973 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7614.16536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7614.16536.1 >prot_L-elsbetiae_contig7614.16536.1 ID=prot_L-elsbetiae_contig7614.16536.1|Name=mRNA_L-elsbetiae_contig7614.16536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=562bp MGDAPSCTAPGEDGGDAGGGEGGGVGGVVCSGWTWSCASGRRRDIPISSMback to top mRNA from alignment at L-elsbetiae_contig7614:538..9354- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7614.16536.1 ID=mRNA_L-elsbetiae_contig7614.16536.1|Name=mRNA_L-elsbetiae_contig7614.16536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8817bp|location=Sequence derived from alignment at L-elsbetiae_contig7614:538..9354- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7614:538..9354- >mRNA_L-elsbetiae_contig7614.16536.1 ID=mRNA_L-elsbetiae_contig7614.16536.1|Name=mRNA_L-elsbetiae_contig7614.16536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3372bp|location=Sequence derived from alignment at L-elsbetiae_contig7614:538..9354- (Laminarionema elsbetiae ELsaHSoW15)back to top |