mRNA_L-elsbetiae_contig7613.16534.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7613.16534.1
Unique NamemRNA_L-elsbetiae_contig7613.16534.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7613.16534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7613contigL-elsbetiae_contig7613:6075..8266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.1386993-CDS-L-elsbetiae_contig7613:6074..62091622816846.1386993-CDS-L-elsbetiae_contig7613:6074..6209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7613 6075..6209 +
1691683857.5209193-CDS-L-elsbetiae_contig7613:6074..62091691683857.5209193-CDS-L-elsbetiae_contig7613:6074..6209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7613 6075..6209 +
1622816846.1493664-CDS-L-elsbetiae_contig7613:8126..82641622816846.1493664-CDS-L-elsbetiae_contig7613:8126..8264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7613 8127..8264 +
1691683857.5325634-CDS-L-elsbetiae_contig7613:8126..82641691683857.5325634-CDS-L-elsbetiae_contig7613:8126..8264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7613 8127..8264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7613.16534.1prot_L-elsbetiae_contig7613.16534.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7613 6075..8264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7613.16534.1

>prot_L-elsbetiae_contig7613.16534.1 ID=prot_L-elsbetiae_contig7613.16534.1|Name=mRNA_L-elsbetiae_contig7613.16534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
PSAREAGNPGGLARDATGLLMGGGSAGACGEGAEGPTDLDLAIRQVSCAS
TLEQALRSILRDIVIADKAATRRSSAARVGGDDAEFGGDDG
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mRNA from alignment at L-elsbetiae_contig7613:6075..8266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7613.16534.1 ID=mRNA_L-elsbetiae_contig7613.16534.1|Name=mRNA_L-elsbetiae_contig7613.16534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2192bp|location=Sequence derived from alignment at L-elsbetiae_contig7613:6075..8266+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAGCGCGCGGGAGGCAGGGAACCCCGGCGGGCTCGCGCGAGATGCGAC
GGGTCTGCTGATGGGCGGGGGAAGCGCCGGCGCTTGCGGGGAGGGCGCGG
AGGGCCCCACGGACCTGGACCTCGCGATCCGGCAGGTGAGAGAGCGTCGT
GGAAGGGAGGGGGGGGGGCGGTGGGTGAAATAATGTGGGTGTGGAGGGGG
GGTGGTGGGAAGGCGCGGAGACCCCCCCCCACGGGCTTTGGTAGATACTC
GCGATCCGACGGGGGGGGGGGTAACGTCGTGGAAGGGGGGCCGAAATAGA
GCGCGAGGGCTGACTGCATGCCGTAAAAGGGATATACCTTAGTATGCCTT
CAAAACTGGTTCTGAATCTAGCACATACTCGGAAGTACGTGCATATGTAC
ACCGTATACACATGGCACAAGATAACACACCCCCTGGACCGATTTTCAAA
GCTCAAGCACTCCACAGCGAGAAGAGTGCAAGTCCCGAAAAGGGTGGCGT
TGGAGAGATCTCATCGAGAGCTGCCCGAAAGCGTGCCGTTTGGTATTATA
GTCACATACCTTGTTGCGGGGTAACCGAGCTTTAAAAATCGATCCAGGGG
GTGTGTTATCTTGTGTCATATGTATATGTACGGTATATGCTGCATTTTTG
GGGGGCCCTGTTGACATTACCCATGACAAAGGAGGCGAGGTGAGGGGGAT
TCCTACTCTGCTAATTCCTATTTCGAGTACAAGTTTACATATATAAAAAT
GGGATGATCTCTTACATCCAAGCTCGAAAAATAGCATGGGGGCAAATTCG
GGGTGCGGAGGGCTAGAGGGTGGTTTTCTCGGTGCCATGCATGCACGGCC
AAGACCGCAGTAGCAGTCATGGGAAGATGTAGGATGAGAACCCTCGCAAT
GACTGCGTTGTGGTCAGACAGGAACACGTGTCAAAATATCTTTCATTTTC
TGCGTGTGTTTCGTACATACATACGACCTCTTGATGGCTTCGGCACTTTT
TGGGACCACGGGCCGTGAGTTGCTAGACTTTGGGATTAGCAACCTCGATT
ATGTTATACGAGCTAATGTGAAGAAAACGACCAAAACAAGCAACAAACAA
CAACACCAACACCACTAACAACAACAACAACAACAACAACAAGCAAAGTG
GTACCGTAGGTGACATAAGATAAGACGCCCCCTGGACCGATATTGAAAGC
TTGGTCACTCCGCAACGAATACGATTCTGACCACAAACGGCAACATTTTC
GGAAAGCTCTCGACGAGATCTTTCCAACGCCGCCCTTTTCGGGACTGACG
CTCTGCTTGCTTTGGAGTACTTGAGCTTTGAAAATCGGTCGAGGGGGTGT
CTTATCTTATGTCACCTACGGTATTAGTCTTCGAGACCAAGAAAGTCTAG
TCCCAGTCGAAAAGCGGGACGGGAAGGGGGACTAGGATTGCAGGGCTGGA
AGCACACCCCTTAACTTCCATATGGCCGGATTCGCGGAGGGGGGGGGTGG
TCGAAAAGCGGGGACGGGAAAGGGGGGAGCGCGGCGCGGCGCGCGATCAG
TCGTGCCGAGAGAGAGTTTCGTGCTTTTGGGCCTTGCAGCCACGGCGGCC
GCGCGGGGGAACGAACGGGTTGCATGCTCTCCGATCCTGCTCCCAAGTAG
AAAAGGAGCAGCCCGCGTGCATGGCTGAGAGCGACCTGGTCCTTCCCAAC
ACATCGTGGCGTAGACGTCTGGTTTGCATGGCTGAGAGCGACTGCTTACT
TGCTATATAGAGTAATATTTTGTTTTTCTTCTGCGGCGTCGAGTGTGCCT
TGTTTTGTGACCACGGGCCCCCAAGGATTTTTTCGACTAGAGAGCTAAAG
GTGAGAAGCAACAACAAACAACGATATGTTAATTTTTATTTTTTTAATTG
CTGCAATACAACTGTCAGTAGTCTAGATACGTAACTGTAATCTAGATACG
TCCCGTCTGGGAAATAGTTGTTTTTTGTGTACGTTTTTGATCAGAACCCC
CCCCCCCCCGCACCCCCCACCCACCCCCGGCCGCCGGCAACCCGTGATCC
AGGTGAGCTGCGCGTCGACCCTCGAGCAAGCTTTGCGAAGCATCCTGCGG
GACATCGTCATCGCCGATAAGGCCGCAACGCGCCGGTCTTCCGCCGCCCG
TGTTGGCGGGGATGATGCAGAGTTTGGCGGGGATGATGGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7613:6075..8266+

>mRNA_L-elsbetiae_contig7613.16534.1 ID=mRNA_L-elsbetiae_contig7613.16534.1|Name=mRNA_L-elsbetiae_contig7613.16534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig7613:6075..8266+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAGCGCGCGGGAGGCAGGGAACCCCGGCGGGCTCGCGCGAGATGCGAC
GGGTCTGCTGATGGGCGGGGGAAGCGCCGGCGCTTGCGGGGAGGGCGCGG
AGGGCCCCACGGACCTGGACCTCGCGATCCGGCAGCCCAGCGCGCGGGAG
GCAGGGAACCCCGGCGGGCTCGCGCGAGATGCGACGGGTCTGCTGATGGG
CGGGGGAAGCGCCGGCGCTTGCGGGGAGGGCGCGGAGGGCCCCACGGACC
TGGACCTCGCGATCCGGCAGGTGAGCTGCGCGTCGACCCTCGAGCAAGCT
TTGCGAAGCATCCTGCGGGACATCGTCATCGCCGATAAGGCCGCAACGCG
CCGGTCTTCCGCCGCCCGTGTTGGCGGGGATGATGCAGAGTTTGGCGGGG
ATGATGGAGTGAGCTGCGCGTCGACCCTCGAGCAAGCTTTGCGAAGCATC
CTGCGGGACATCGTCATCGCCGATAAGGCCGCAACGCGCCGGTCTTCCGC
CGCCCGTGTTGGCGGGGATGATGCAGAGTTTGGCGGGGATGATGGA
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