mRNA_L-elsbetiae_contig7611.16533.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI) HSP 1 Score: 526 bits (1355), Expect = 7.100e-176 Identity = 312/451 (69.18%), Postives = 335/451 (74.28%), Query Frame = 1 Query: 1 VGLVCCVLLLLLRRKGKVDWSLLLLFTPMWVCVLLAATLRCITPPHPQVMGDQTQFHRAGSFFTGLFHLVARGAQPMLIVLKVDGQVEGAWSSVFIPLWMFMGAIALGGSALCCCAPMVSRGVIPEIRPLLIRGMLLCSVGTFSLAFLALLFLVFLTLELDNNENFSPRMILAPLIALYALILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNGGXXXXXXXXXVG---DAEAPGQQWGSPPLFPARERAGAGRAGXXXXXXXXXGVGSSVMAPTILMRESSTLFRRASESICRRLGETDGSLLDPEVGAFE-------LADWSRRSQGGGTRSRDS----VSDXXXXXXXXXXXXXGXXXXXXPGGERVPQRSSRSFHALQDLLPRARGVVARGGRRFSAVVSGASGREGHERFAMSGGRQRAGAEKEGSPRQRLREGNEAASKGSPEE 1311 +G+ + L R +GKVDWSLLLLFTPMW CVLLA TLRCITPPHPQV+ + HRAG+FFTGLFHLVARGAQP+LIVLKVDGQ+EG WSSVFIPLWMFMGAIALGGSALCCCAP VSRGVIPEIRPLLIRGMLLCSVGTFSLAF ALLFLVFLTLELDNNENFSPR ILAPLIALYALILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNGG G D EA GSPP+ A XXXXXXXXX VMAPTILMRESS LFRRAS S CRRLGE DGSL++P+V AFE LADW RR GG RSRDS + D GERVPQRSSRSFH LQD P ARG V RGG+RF+A V+G+S REGHERF++S GRQ AGAEKEGSPR R +G A SK +PE+ Sbjct: 131 LGVAAAKVTLAYRLEGKVDWSLLLLFTPMWACVLLAGTLRCITPPHPQVIAEHASLHRAGAFFTGLFHLVARGAQPVLIVLKVDGQLEGPWSSVFIPLWMFMGAIALGGSALCCCAPTVSRGVIPEIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTLELDNNENFSPRTILAPLIALYALILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNGGGGMDASSTAFGGVDDVEAGRGVRGSPPIGGAEXXXXXXXXXXXXXXXXXXXX--XVMAPTILMRESSMLFRRASASFCRRLGEADGSLMNPDVTAFEVRFRAVELADWGRR--GGRFRSRDSDIAAIDDGGGSEER---------------GERVPQRSSRSFHVLQDCFPHARGAVRRGGQRFTAAVTGSSSREGHERFSVSSGRQLAGAEKEGSPRPRGEDG--ATSKRTPED 560
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Match: A0A7S2USS3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USS3_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.220e-24 Identity = 75/205 (36.59%), Postives = 112/205 (54.63%), Query Frame = 1 Query: 22 LLLLLRRKGKVD-WSLLLLFTPMWVCVLLAATLRCITPPHPQVMGDQTQ---FHRAGSFFTGLFHLVARGAQPMLIVLKVDGQVEGAWSSVFIPLWMFMGAIALGGSALCCCAPMVSRGVIP--EIRPLLIRGMLLCSVGTFSLAFLALLFLVFLTLELDNN-ENFSPRMILAPLIALYALILVFLPLLLLVTRHYVR-TMRTAE 612 L++ L +G V + L LLF P+W V ++ +RC P Q Q HR + G FH ++R QP+LI K+D + G W SVF P W+ + + + AP++SR + E+R LL+R M LCS+ TF++A +FL L +L+ + S IL P+I LY+LI+VFLP+L+L ++ Y R T R E Sbjct: 124 LVMFLEDQGGVSKYPLTLLFLPIWASVTSSSFIRCCLPSPAQRQNRTAQPAALHRCSALVAGTFHFLSRALQPLLITTKIDNFLSGDWWSVFTPAWILLCVMLCISVIVGNTAPLISRHQLEATEVRILLVRMMFLCSLVTFTVAIFGFMFLYNLCRKLEGGRDTASITQILIPVIILYSLIMVFLPMLILASQRYHRATQRLVE 328
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Match: A0A836CE73_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE73_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.680e-7 Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 1 Query: 19 VLLLLLRRKGKVDWSL--LLLFTPMWVCVLLAATLRCITPPHPQVMGDQTQFHRAGSFFTGLFHLVARGAQPMLIVLKVDGQVEGAWSSVFIP--LWMFMGAIALGGSALCCCA---PMVSRGVIPEI-RPLLIRGMLLCSVGTFSLAFLALLFLVFLTLELDNNENFSPRM-----ILAPLIALYALILVFLPLL 567 VL +LR G + S+ +++ P+WV + +T + P P + + +R + LFHL A G Q LI KVDG + G+WS+VFIP L + + IAL G+ L PM R +P + RP + L + + +L +F F L +E P IL PLI + ++ +VFLPLL Sbjct: 119 VLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLR--LPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLL 312 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7611.16533.1 >prot_L-elsbetiae_contig7611.16533.1 ID=prot_L-elsbetiae_contig7611.16533.1|Name=mRNA_L-elsbetiae_contig7611.16533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=437bp VGLVCCVLLLLLRRKGKVDWSLLLLFTPMWVCVLLAATLRCITPPHPQVMback to top mRNA from alignment at L-elsbetiae_contig7611:270..9543+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7611.16533.1 ID=mRNA_L-elsbetiae_contig7611.16533.1|Name=mRNA_L-elsbetiae_contig7611.16533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9274bp|location=Sequence derived from alignment at L-elsbetiae_contig7611:270..9543+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7611:270..9543+ >mRNA_L-elsbetiae_contig7611.16533.1 ID=mRNA_L-elsbetiae_contig7611.16533.1|Name=mRNA_L-elsbetiae_contig7611.16533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2622bp|location=Sequence derived from alignment at L-elsbetiae_contig7611:270..9543+ (Laminarionema elsbetiae ELsaHSoW15)back to top |