mRNA_L-elsbetiae_contig761.16529.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig761.16529.1
Unique NamemRNA_L-elsbetiae_contig761.16529.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig761.16529.1 vs. uniprot
Match: A0A6H5KUI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.400e-6
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  220 ISEQELFAPLRSGLPPTDAPVRIPTATGR 306
            +SE+ELFAPLRSGLP TD PVRIPTAT R
Sbjct:  264 VSEEELFAPLRSGLPSTDTPVRIPTATAR 292
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BLAST of mRNA_L-elsbetiae_contig761.16529.1 vs. uniprot
Match: D7G1J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 7.220e-6
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  220 ISEQELFAPLRSGLPPTDAPVRIPTATGR 306
            +SE+ELFAPLRSGLP TD PVRIPTAT R
Sbjct: 1292 VSEEELFAPLRSGLPSTDTPVRIPTATAR 1320
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig761.16529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUI1_9PHAE6.400e-682.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J2_ECTSI7.220e-682.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig761contigL-elsbetiae_contig761:5061..6199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.6197395-CDS-L-elsbetiae_contig761:5060..53271622816845.6197395-CDS-L-elsbetiae_contig761:5060..5327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig761 5061..5327 -
1691683857.1419644-CDS-L-elsbetiae_contig761:5060..53271691683857.1419644-CDS-L-elsbetiae_contig761:5060..5327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig761 5061..5327 -
1622816845.630848-CDS-L-elsbetiae_contig761:6154..61991622816845.630848-CDS-L-elsbetiae_contig761:6154..6199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig761 6155..6199 -
1691683857.151837-CDS-L-elsbetiae_contig761:6154..61991691683857.151837-CDS-L-elsbetiae_contig761:6154..6199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig761 6155..6199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig761.16529.1prot_L-elsbetiae_contig761.16529.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig761 5061..6199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig761.16529.1

>prot_L-elsbetiae_contig761.16529.1 ID=prot_L-elsbetiae_contig761.16529.1|Name=mRNA_L-elsbetiae_contig761.16529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
GYGQQPDVRQGRHEQSSSTETDQKYLRVMQRREQDEAVRRNAVPAGGNRS
YHRGGGGGGGETPSTSRDTTGGGISEQELFAPLRSGLPPTDAPVRIPTAT
GRSG
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mRNA from alignment at L-elsbetiae_contig761:5061..6199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig761.16529.1 ID=mRNA_L-elsbetiae_contig761.16529.1|Name=mRNA_L-elsbetiae_contig761.16529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1139bp|location=Sequence derived from alignment at L-elsbetiae_contig761:5061..6199- (Laminarionema elsbetiae ELsaHSoW15)
GGGTACGGCCAGCAGCCGGATGTTCGGCAAGGCCGGCATGAGCAGGTGAT
GATGATGAAGAAAAAGACGACACAACCGCGGGTGCTGGGAAAATCATCGA
TGTTGTGCCGGTCGCTCGTGTGCCCGGTTTGTAGTTTTGTGTTTTGTCAA
CCGTTCATGTTTTTAGTTCTGTGTTTGTGGATGTTTTTTTGTGTTTTTGC
CAAAATAAAAAAGAAGAAAAGCCCCGGTGTTCACCTCGTCCTGTGTGACT
CCGGTTGGTTCTAGTTGTACAGACGAATGCACTGCAAAGTGTAGTACCTA
TAAGTACATAGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAATAAAT
GGGAAGGACACACACACAACCGTTCGCGCGCCGGGGGTTCTTCTTGATCC
AACCTAGCCGCACAAAAATAATAGAAAAAAGACCGACCATTATGTAAGCC
GGGTGGTTGCGAAGCTACAAGCGGAAGGCGCGAAGTTTGCCGCTACAATA
TGTATCTGCGCCTTCACTTTGCAGGATTCATCGCTGGTATCAACCAGCCC
GCTCGCCTGTCCCGCCCATGCGACTACCTTGGTTGCGGCCGAAGAAGGAA
GACACAGACAGTAGTCGAAAATCGAAAGCCGCGCGATACGCAATATGTAC
CGCGCGCGGAGGGCGAGAGAACCGAGCCCCAGCAACACAGCAATGCAACG
GGCATCATTGACGACAGACAGAGAGGCATTAATTACAATATGCGCTTGTT
TTCAACTCGCCCATCCACTCGCCTCGCCCCCGCCCTCTTTTTCGTGTTAT
TGCCCCTCGCCTGCGAAATGGCAAACGACTCGTTTTCGTCCTCCCCGCCC
CCCACCCCCCTCCCCCCACCAGTCTTCCAGCACGGAGACAGACCAGAAGT
ACCTCCGAGTCATGCAGCGCCGCGAGCAGGACGAAGCCGTTCGACGGAAC
GCCGTCCCGGCGGGTGGAAACCGGAGCTACCACCGCGGCGGCGGCGGCGG
CGGCGGCGAGACCCCGTCAACATCGCGGGACACGACAGGCGGCGGGATAA
GCGAGCAGGAGCTGTTCGCGCCGCTTCGGTCTGGCCTTCCGCCGACGGAC
GCTCCCGTCCGCATCCCGACTGCCACTGGTAGATCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig761:5061..6199-

>mRNA_L-elsbetiae_contig761.16529.1 ID=mRNA_L-elsbetiae_contig761.16529.1|Name=mRNA_L-elsbetiae_contig761.16529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig761:5061..6199- (Laminarionema elsbetiae ELsaHSoW15)
GGGTACGGCCAGCAGCCGGATGTTCGGCAAGGCCGGCATGAGCAGGGGTA
CGGCCAGCAGCCGGATGTTCGGCAAGGCCGGCATGAGCAGTCTTCCAGCA
CGGAGACAGACCAGAAGTACCTCCGAGTCATGCAGCGCCGCGAGCAGGAC
GAAGCCGTTCGACGGAACGCCGTCCCGGCGGGTGGAAACCGGAGCTACCA
CCGCGGCGGCGGCGGCGGCGGCGGCGAGACCCCGTCAACATCGCGGGACA
CGACAGGCGGCGGGATAAGCGAGCAGGAGCTGTTCGCGCCGCTTCGGTCT
GGCCTTCCGCCGACGGACGCTCCCGTCCGCATCCCGACTGCCACTGGTAG
ATCCGGGTCTTCCAGCACGGAGACAGACCAGAAGTACCTCCGAGTCATGC
AGCGCCGCGAGCAGGACGAAGCCGTTCGACGGAACGCCGTCCCGGCGGGT
GGAAACCGGAGCTACCACCGCGGCGGCGGCGGCGGCGGCGGCGAGACCCC
GTCAACATCGCGGGACACGACAGGCGGCGGGATAAGCGAGCAGGAGCTGT
TCGCGCCGCTTCGGTCTGGCCTTCCGCCGACGGACGCTCCCGTCCGCATC
CCGACTGCCACTGGTAGATCCGGG
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