mRNA_L-elsbetiae_contig7608.16527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7608.16527.1
Unique NamemRNA_L-elsbetiae_contig7608.16527.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7608.16527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7608contigL-elsbetiae_contig7608:6031..6625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7608.16527.1prot_L-elsbetiae_contig7608.16527.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7608 6230..6574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.4585462-UTR-L-elsbetiae_contig7608:6030..62291622816845.4585462-UTR-L-elsbetiae_contig7608:6030..6229Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7608 6031..6229 +
1691683857.0348952-UTR-L-elsbetiae_contig7608:6030..62291691683857.0348952-UTR-L-elsbetiae_contig7608:6030..6229Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7608 6031..6229 +
1622816845.4851177-UTR-L-elsbetiae_contig7608:6574..66251622816845.4851177-UTR-L-elsbetiae_contig7608:6574..6625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7608 6575..6625 +
1691683857.0583646-UTR-L-elsbetiae_contig7608:6574..66251691683857.0583646-UTR-L-elsbetiae_contig7608:6574..6625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7608 6575..6625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.4699087-CDS-L-elsbetiae_contig7608:6229..65741622816845.4699087-CDS-L-elsbetiae_contig7608:6229..6574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7608 6230..6574 +
1691683857.0469105-CDS-L-elsbetiae_contig7608:6229..65741691683857.0469105-CDS-L-elsbetiae_contig7608:6229..6574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7608 6230..6574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7608.16527.1

>prot_L-elsbetiae_contig7608.16527.1 ID=prot_L-elsbetiae_contig7608.16527.1|Name=mRNA_L-elsbetiae_contig7608.16527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MEEVYGSQTEEEASCVGLTCTSFLFRFFSGFRVLSCKCTSYFASSCSRVR
ILFCVSCWALWRVPCVRSRSTTGIVCRRKSFGRDAEWREAQLQRRGKMVR
SSCFAILATCQEDK*
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mRNA from alignment at L-elsbetiae_contig7608:6031..6625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7608.16527.1 ID=mRNA_L-elsbetiae_contig7608.16527.1|Name=mRNA_L-elsbetiae_contig7608.16527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=595bp|location=Sequence derived from alignment at L-elsbetiae_contig7608:6031..6625+ (Laminarionema elsbetiae ELsaHSoW15)
TAATGACACAGCCGAGAAGGTGGAGAGAGAGCGCAGACAGCGCTGAAGCG
GGCGAAGCCCGCGAACGCAACGCACCCGGTGTGGGCGTACTTCACAAGGT
CTATGTACAGACTCGTTGGGCGGAATTGCCTTTCAGACGACAACGTCGAG
CTTCTCGTGTACATATGTACTTGCGCAACGTATGGGGAGTGGTGGCTGAA
TGGAAGAAGTCTACGGCTCGCAAACAGAAGAAGAGGCTAGTTGCGTTGGG
CTGACCTGCACGTCTTTCTTGTTTCGTTTTTTTTCCGGTTTTCGTGTGCT
GAGCTGCAAGTGTACCAGTTACTTTGCTTCGAGTTGCAGCAGAGTTAGGA
TTTTGTTTTGTGTTTCGTGTTGGGCGTTGTGGCGTGTACCTTGTGTGCGA
TCTCGAAGTACCACCGGTATAGTCTGCCGTCGAAAATCGTTTGGGCGTGA
CGCTGAGTGGCGTGAGGCTCAGTTGCAGAGGCGTGGCAAGATGGTAAGAA
GCTCTTGCTTTGCTATTCTGGCTACTTGCCAAGAAGATAAATAGTGAGAG
AGAGAGAGCGAAGAGCGAAGAATTTAAGAAGGGATAGAGTACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7608:6031..6625+

>mRNA_L-elsbetiae_contig7608.16527.1 ID=mRNA_L-elsbetiae_contig7608.16527.1|Name=mRNA_L-elsbetiae_contig7608.16527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig7608:6031..6625+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGAAGTCTACGGCTCGCAAACAGAAGAAGAGGCTAGTTGCGTTGG
GCTGACCTGCACGTCTTTCTTGTTTCGTTTTTTTTCCGGTTTTCGTGTGC
TGAGCTGCAAGTGTACCAGTTACTTTGCTTCGAGTTGCAGCAGAGTTAGG
ATTTTGTTTTGTGTTTCGTGTTGGGCGTTGTGGCGTGTACCTTGTGTGCG
ATCTCGAAGTACCACCGGTATAGTCTGCCGTCGAAAATCGTTTGGGCGTG
ACGCTGAGTGGCGTGAGGCTCAGTTGCAGAGGCGTGGCAAGATGGTAAGA
AGCTCTTGCTTTGCTATTCTGGCTACTTGCCAAGAAGATAAATAGATGGA
AGAAGTCTACGGCTCGCAAACAGAAGAAGAGGCTAGTTGCGTTGGGCTGA
CCTGCACGTCTTTCTTGTTTCGTTTTTTTTCCGGTTTTCGTGTGCTGAGC
TGCAAGTGTACCAGTTACTTTGCTTCGAGTTGCAGCAGAGTTAGGATTTT
GTTTTGTGTTTCGTGTTGGGCGTTGTGGCGTGTACCTTGTGTGCGATCTC
GAAGTACCACCGGTATAGTCTGCCGTCGAAAATCGTTTGGGCGTGACGCT
GAGTGGCGTGAGGCTCAGTTGCAGAGGCGTGGCAAGATGGTAAGAAGCTC
TTGCTTTGCTATTCTGGCTACTTGCCAAGAAGATAAATAG
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