mRNA_L-elsbetiae_contig7606.16526.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7606.16526.1
Unique NamemRNA_L-elsbetiae_contig7606.16526.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7606.16526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7606contigL-elsbetiae_contig7606:8832..9400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size569
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.4075801-UTR-L-elsbetiae_contig7606:8831..90941622816845.4075801-UTR-L-elsbetiae_contig7606:8831..9094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7606 8832..9094 +
1691683857.0121205-UTR-L-elsbetiae_contig7606:8831..90941691683857.0121205-UTR-L-elsbetiae_contig7606:8831..9094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7606 8832..9094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.4220421-CDS-L-elsbetiae_contig7606:9094..94001622816845.4220421-CDS-L-elsbetiae_contig7606:9094..9400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7606 9095..9400 +
1691683857.0236762-CDS-L-elsbetiae_contig7606:9094..94001691683857.0236762-CDS-L-elsbetiae_contig7606:9094..9400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7606 9095..9400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7606.16526.1prot_L-elsbetiae_contig7606.16526.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7606 9095..9400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7606.16526.1

>prot_L-elsbetiae_contig7606.16526.1 ID=prot_L-elsbetiae_contig7606.16526.1|Name=mRNA_L-elsbetiae_contig7606.16526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MDQTEREPKHNCCCAVAKNKSNHQATRRKRSETPTAGGPVGCPCPASLAP
PIPGASREAYRPLFARVWHQQQFDPLTTSAPIGVLACSRIPLKVYMPRLT
TS
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mRNA from alignment at L-elsbetiae_contig7606:8832..9400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7606.16526.1 ID=mRNA_L-elsbetiae_contig7606.16526.1|Name=mRNA_L-elsbetiae_contig7606.16526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=569bp|location=Sequence derived from alignment at L-elsbetiae_contig7606:8832..9400+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCGCTTGGTGGCTGAAAGACGACGATGCGCGCCGGCGCGCAATAACC
GTCCATCGCTGCAATAAGTGCGCTGTCTTTAATGTACATGTACCCAGCAG
GATGGCCTTGAATACAGTAGACGCTACTGTTTTGTAGTGCTGCTGCGTAT
TTTTCCGTCTCTCCCTCAGCCTCCAACCCTGAGGAGTGGCATCGACAACT
GACAACCATCTCAAGTATCGGTTTAAAAAAAGAAAGAAGTACCAGTACAG
TCGTACTCAATTAATGGACCAGACAGAGAGAGAGCCAAAACACAACTGCT
GCTGCGCTGTTGCGAAAAACAAAAGTAATCATCAAGCAACACGACGAAAA
CGAAGCGAGACACCGACGGCGGGCGGCCCGGTCGGTTGCCCCTGCCCTGC
CTCCCTCGCCCCTCCCATCCCCGGCGCATCCAGAGAGGCCTATCGCCCCC
TCTTCGCTCGCGTGTGGCATCAACAGCAGTTCGACCCCTTAACCACTAGT
GCACCCATCGGGGTTCTCGCGTGCAGCCGAATCCCGTTAAAGGTTTATAT
GCCTCGTCTCACCACTAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7606:8832..9400+

>mRNA_L-elsbetiae_contig7606.16526.1 ID=mRNA_L-elsbetiae_contig7606.16526.1|Name=mRNA_L-elsbetiae_contig7606.16526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig7606:8832..9400+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCAGACAGAGAGAGAGCCAAAACACAACTGCTGCTGCGCTGTTGC
GAAAAACAAAAGTAATCATCAAGCAACACGACGAAAACGAAGCGAGACAC
CGACGGCGGGCGGCCCGGTCGGTTGCCCCTGCCCTGCCTCCCTCGCCCCT
CCCATCCCCGGCGCATCCAGAGAGGCCTATCGCCCCCTCTTCGCTCGCGT
GTGGCATCAACAGCAGTTCGACCCCTTAACCACTAGTGCACCCATCGGGG
TTCTCGCGTGCAGCCGAATCCCGTTAAAGGTTTATATGCCTCGTCTCACC
ACTAGCATGGACCAGACAGAGAGAGAGCCAAAACACAACTGCTGCTGCGC
TGTTGCGAAAAACAAAAGTAATCATCAAGCAACACGACGAAAACGAAGCG
AGACACCGACGGCGGGCGGCCCGGTCGGTTGCCCCTGCCCTGCCTCCCTC
GCCCCTCCCATCCCCGGCGCATCCAGAGAGGCCTATCGCCCCCTCTTCGC
TCGCGTGTGGCATCAACAGCAGTTCGACCCCTTAACCACTAGTGCACCCA
TCGGGGTTCTCGCGTGCAGCCGAATCCCGTTAAAGGTTTATATGCCTCGT
CTCACCACTAGC
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