mRNA_L-elsbetiae_contig7606.16525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7606.16525.1
Unique NamemRNA_L-elsbetiae_contig7606.16525.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7606.16525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7606contigL-elsbetiae_contig7606:2916..3718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size264
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7606.16525.1prot_L-elsbetiae_contig7606.16525.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7606 2928..3718 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.3522658-UTR-L-elsbetiae_contig7606:2915..29271622816845.3522658-UTR-L-elsbetiae_contig7606:2915..2927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7606 2916..2927 +
1691683856.9744413-UTR-L-elsbetiae_contig7606:2915..29271691683856.9744413-UTR-L-elsbetiae_contig7606:2915..2927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7606 2916..2927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.3627653-CDS-L-elsbetiae_contig7606:2927..29751622816845.3627653-CDS-L-elsbetiae_contig7606:2927..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7606 2928..2975 +
1691683856.986668-CDS-L-elsbetiae_contig7606:2927..29751691683856.986668-CDS-L-elsbetiae_contig7606:2927..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7606 2928..2975 +
1622816845.3749104-CDS-L-elsbetiae_contig7606:3514..37181622816845.3749104-CDS-L-elsbetiae_contig7606:3514..3718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7606 3515..3718 +
1691683857.000568-CDS-L-elsbetiae_contig7606:3514..37181691683857.000568-CDS-L-elsbetiae_contig7606:3514..3718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7606 3515..3718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7606.16525.1

>prot_L-elsbetiae_contig7606.16525.1 ID=prot_L-elsbetiae_contig7606.16525.1|Name=mRNA_L-elsbetiae_contig7606.16525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MSMLGLTTGLMIVCVLAKIRGFQQALAAAQTTCTLLVRKVAVAEKERNTA
QGQRDTANTKVKTADKEKTRLKKDLRASKATSSA
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mRNA from alignment at L-elsbetiae_contig7606:2916..3718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7606.16525.1 ID=mRNA_L-elsbetiae_contig7606.16525.1|Name=mRNA_L-elsbetiae_contig7606.16525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=803bp|location=Sequence derived from alignment at L-elsbetiae_contig7606:2916..3718+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCACGTTGCCATGTCCATGCTCGGCCTCACGACCGGCCTCATGATCGT
TTGTGTGCTGGTGAGTAGGAGAAGGAAGCGCAGGTTTACTGCCGTGGGAT
GTACTGTCCAAAATGTGGCATTGCGCTGCTGTGGGATGTAGCACTCTGCT
GTTATTTACAAATGGTTGCGCATGTTTCGTTTCGACTTGGGATCGAAGAC
TAGGTACGAGGTCGAAATGTGTAAATAAACATACTAGAGTTGGGATCAAC
GCCCGCACATGATGGCAGAACATCAACGTATTCCGGTTCGTTGTTGTACT
CTTGCAGTGAACCCCGAATCAAACACCGTGGTGCGCGAATTAATGCAGGA
GACGAAGCAAGGGGTAGTGCGACGCACATTGAGAAAACTGGGTACTGTAA
CACCGGCACGCCATGTGCTTCTAGGTCAAGGCTCTTCGGGACGTACTGCT
ACGTGCCTGCTGCAAGATTAAGTGTAGTGATCCAAGAATATTTGATCCTG
CATTTTATGCTGATATTTCGAGAGCATTTCAGAGAGGACTGGAATCACCA
AAGAAAATTATCACACCAACCCCATTCCGCTGTGCTTTTTTTTGTGCAGG
CCAAGATCAGAGGCTTTCAGCAAGCTCTCGCCGCAGCGCAGACAACGTGC
ACCCTCTTGGTGAGGAAGGTCGCGGTGGCGGAAAAGGAGCGCAACACAGC
GCAGGGCCAGCGCGACACCGCGAACACGAAAGTCAAAACCGCGGATAAGG
AGAAGACCAGACTCAAGAAAGACCTCCGAGCGTCGAAAGCCACCAGCAGC
GCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7606:2916..3718+

>mRNA_L-elsbetiae_contig7606.16525.1 ID=mRNA_L-elsbetiae_contig7606.16525.1|Name=mRNA_L-elsbetiae_contig7606.16525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig7606:2916..3718+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCATGCTCGGCCTCACGACCGGCCTCATGATCGTTTGTGTGCTGAT
GTCCATGCTCGGCCTCACGACCGGCCTCATGATCGTTTGTGTGCTGGCCA
AGATCAGAGGCTTTCAGCAAGCTCTCGCCGCAGCGCAGACAACGTGCACC
CTCTTGGTGAGGAAGGTCGCGGTGGCGGAAAAGGAGCGCAACACAGCGCA
GGGCCAGCGCGACACCGCGAACACGAAAGTCAAAACCGCGGATAAGGAGA
AGACCAGACTCAAGAAAGACCTCCGAGCGTCGAAAGCCACCAGCAGCGCC
GCCAAGATCAGAGGCTTTCAGCAAGCTCTCGCCGCAGCGCAGACAACGTG
CACCCTCTTGGTGAGGAAGGTCGCGGTGGCGGAAAAGGAGCGCAACACAG
CGCAGGGCCAGCGCGACACCGCGAACACGAAAGTCAAAACCGCGGATAAG
GAGAAGACCAGACTCAAGAAAGACCTCCGAGCGTCGAAAGCCACCAGCAG
CGCC
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