mRNA_L-elsbetiae_contig760.16516.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig760.16516.1
Unique NamemRNA_L-elsbetiae_contig760.16516.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig760.16516.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.150e-57
Identity = 115/167 (68.86%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:   46 AGPGGYPGAFVMGSGGRPGGAKGRGRVFGTPLKELVLNPDRCRRGVLDPTLGVPDAVLSLIEALSEENCRDTPGLFVREASEADLIKVVKSLDRSNCVPGGCSDGISTSASYSASPAWLVSRLTGGXXXXXSRGVAQEKSGESKGKGGHGGVSPHALASALVYFLHR 546
            AG GGYPGAFVMG  GR GGAKGRGRVFG PL++LVLNP+RCRRG LDP LGVPDAVLSLIEALSEE CR++PGLF+REA E +L+KVVKSLD++N +PG    G   S   S+SPAWLVSRLTGG       G A+E+  +S GKG  G VSPHA+A+ALVYFLHR
Sbjct:  489 AGAGGYPGAFVMG--GRRGGAKGRGRVFGVPLEDLVLNPERCRRGTLDPALGVPDAVLSLIEALSEEGCRNSPGLFLREADETELVKVVKSLDKANTLPGRRGGG--RSGDSSSSPAWLVSRLTGG-----GEGTAEEE--KSGGKGALG-VSPHAVANALVYFLHR 643
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BLAST of mRNA_L-elsbetiae_contig760.16516.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 7.350e-57
Identity = 113/167 (67.66%), Postives = 130/167 (77.84%), Query Frame = 1 
Query:   46 AGPGGYPGAFVMGSGGRPGGAKGRGRVFGTPLKELVLNPDRCRRGVLDPTLGVPDAVLSLIEALSEENCRDTPGLFVREASEADLIKVVKSLDRSNCVPGGCSDGISTSASYSASPAWLVSRLTGGXXXXXSRGVAQEKSGESKGKGGHGGVSPHALASALVYFLHR 546
            AG GGYPGAFVMG  GR GGAKGRGRVFG PL++LVLNP+RCRRG LDP LGVPDAVLSLIEALSEE CR++PGLF+REA E +L+KVVKSLD++N +PG    G  +S S ++SPAWLVSRLTGG       G A+E   E  G  G  GVSP A+A+ALVYFLHR
Sbjct:  468 AGAGGYPGAFVMG--GRRGGAKGRGRVFGVPLEDLVLNPERCRRGTLDPALGVPDAVLSLIEALSEEGCRNSPGLFLREADETELVKVVKSLDKANTLPGRRGGG--SSGSSASSPAWLVSRLTGG-----GEGTAEE---EKSGGRGALGVSPQAVATALVYFLHR 622
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BLAST of mRNA_L-elsbetiae_contig760.16516.1 vs. uniprot
Match: A0A836CLX4_9STRA (TLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.070e-7
Identity = 44/146 (30.14%), Postives = 59/146 (40.41%), Query Frame = 1 
Query:  109 KGRGRVFGTPLKELVLNPDRCRRGVLDPTLGVPDAVLSLIEALSEENCRDTPGLFVREASEADLIKVVKSLDRSNCVPGGCSDGISTSASYSASPAWLVSRLTGGXXXXXSRGVAQEKSGESKGKGGHGGVSPHALASALVYFLHR 546
            + R  VFG  L+EL  +P R    +LD    +PDA+ SL+ ALS       PGLF   A+  +++ V K+L+  N VP                                               GG   VS HALA+AL+ FLHR
Sbjct:  297 RSRDTVFGVDLEELFCSPRRSAGAMLDAAAELPDALASLLAALSHPLVLSEPGLFQVAAAPGEVLTVTKALNAGNAVPVDA--------------------------------------------GGSSLVSAHALAAALLLFLHR 398
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig760.16516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KE74_9PHAE1.150e-5768.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHU4_ECTSI7.350e-5767.66Rap2 interacting protein x isoform 3 n=1 Tax=Ectoc... [more]
A0A836CLX4_9STRA2.070e-730.14TLD-domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig760contigL-elsbetiae_contig760:29364..31563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size546
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig760.16516.1prot_L-elsbetiae_contig760.16516.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig760 29364..31563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.9062314-CDS-L-elsbetiae_contig760:29363..295301622816844.9062314-CDS-L-elsbetiae_contig760:29363..29530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 29364..29530 +
1691683856.7448905-CDS-L-elsbetiae_contig760:29363..295301691683856.7448905-CDS-L-elsbetiae_contig760:29363..29530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 29364..29530 +
1622816844.9197865-CDS-L-elsbetiae_contig760:30055..301191622816844.9197865-CDS-L-elsbetiae_contig760:30055..30119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 30056..30119 +
1691683856.7565365-CDS-L-elsbetiae_contig760:30055..301191691683856.7565365-CDS-L-elsbetiae_contig760:30055..30119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 30056..30119 +
1622816844.9327102-CDS-L-elsbetiae_contig760:31248..315631622816844.9327102-CDS-L-elsbetiae_contig760:31248..31563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 31249..31563 +
1691683856.7649426-CDS-L-elsbetiae_contig760:31248..315631691683856.7649426-CDS-L-elsbetiae_contig760:31248..31563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 31249..31563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig760.16516.1

>prot_L-elsbetiae_contig760.16516.1 ID=prot_L-elsbetiae_contig760.16516.1|Name=mRNA_L-elsbetiae_contig760.16516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
RSSPGHGGVATAAAGAGPGGYPGAFVMGSGGRPGGAKGRGRVFGTPLKEL
VLNPDRCRRGVLDPTLGVPDAVLSLIEALSEENCRDTPGLFVREASEADL
IKVVKSLDRSNCVPGGCSDGISTSASYSASPAWLVSRLTGGGGGGGSRGV
AQEKSGESKGKGGHGGVSPHALASALVYFLHR
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mRNA from alignment at L-elsbetiae_contig760:29364..31563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig760.16516.1 ID=mRNA_L-elsbetiae_contig760.16516.1|Name=mRNA_L-elsbetiae_contig760.16516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2200bp|location=Sequence derived from alignment at L-elsbetiae_contig760:29364..31563+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTCGTCGCCGGGTCACGGCGGTGTGGCGACGGCCGCTGCCGGAGCGGG
ACCCGGGGGGTATCCGGGGGCGTTCGTGATGGGCAGCGGTGGTCGGCCGG
GAGGGGCCAAGGGGAGGGGACGGGTCTTCGGCACCCCCTTGAAGGAGCTT
GTGCTCAATCCCGACAGGTGGGCTCAGCCGTATTACCCTGGTCGGACCTC
AAACCGTGTATGTATCTTATGATTTTTTTTTTTTCTCACGGATACCCACG
CGTCTACCAGCGCTTGGATCATGACGTCATGACGAGGTTCTGGATTGGTT
CCGAGGGGTATGTGGGGCGTGCAATGTACGGTTTATATTTTTTTCTTCTT
TTTCTTACGGATGCGTACCCACACACGTTTAACCAGCGGTCGGACGAGGG
TCCGAGCAAATTTAGAAGCAACGCACCGTTTTTGGGGCTGCGTAGTAACC
GTGGTGGCATGTTTTTTCTTTCTACCATGCCAGTGTGCTGTGTCTCACGT
GGTATTTTGTAATGTTGTAGCTTTTGCGCTGCGGAGGCTGGGACTCCTCG
ATGAAGGCCTCGTGTGTGTGTGCGTGCGTGCGTGTAGATGCTGTGCCCCG
CCTTCCGTTTGACGACACCTTGACAAGCCTCTCACTCGCGTTGTTGCGGC
ATCTTTCTTGGATGTCTGGCGTGCTTTGTCCTCTCCGCGCAGGTGCCGCC
GTGGCGTGCTCGACCCTACGCTGGGGGTCCCGGATGCTGTACTGAGTCTG
ATCGAGGTGAGTGAAAACAACCTACCGTAACCGCTCTAAGTTCCCCCCGG
GGTTCTGAGTTCAGGTGAAACCAAACTACCGTAATCCGCTCCAAGTTCCC
CCCGGAGTTTTGAGCCCCCCCCCATCACCTTTTCGGCCTGAAAGCATGGT
TTCTCCGAGCTCCCTCCCCCCGGGGGGGGGCGGCCTGAAAGCATGATTTC
TCTGAGTTCCCCCCGGGGGGGACTGCTGGTTTCACAAAAAAAAAAGACCC
CCCTCCCCCTCCCCGGGGGTAACCTCGAGCGGATTACGGTATAAACATTC
GCGTGATCTAATTCGCTCACTCCGCGCCGAACCTGAAACAGAGGGCGGCC
TTCCTCGATTCACCTAAATAGGATGCCCGGACGTGGTGTAGATTTCCCTA
TCTTTCGAGGCTGTTTGCGATCGGCGCTTCCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTAAATATATCTCTCTCGTTGGGCGCTT
CGTAGTAACCTACCTAGCCCCCAATTCCAGAAGAAGCTTTTCGCAGTTTG
GGATCGCCTGAAGAGGGGTATGCTTCTTTCTATGTATGTAGTCGGCGCGA
ATTTCGGGCGCGAAGCATCGTGGAGACCCCCTTCGCCAGGACACTAACTC
TTCTCCAGGAAATAGAAACAGGCACTCCGTAACCGTAAGGCTTACCCAGA
ACCCCTTTCCCGATTCCAACACTTTATCCCATGTGATACAGTAGCTCTCA
AGACAAACTCTGCCAAGGCTACTGAGCGTCGTGGAACCCACATTTTACTA
CCATACTTCTTTTCCGCGTCGCCGTTTCAACGTGCCGTCCATCGCTGCTG
CCGAAGGATTTGGCTCTTTAAGTGCTAGGAACAAGCATGGTGTGCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNTTTCCGTTTTGGGA
TTGAAAAACGCTCTATTCGAAATTGACCCCGCATCTCCCATAGAGATCTC
CCGCGCCCGCTTACGGACTGCAGCGCACTTGCCCTTGCCGTACCCCCCTC
CCCCCCCACCTCGTGTGGGCGCGAATCGGCATCAGGCACTGTCCGAGGAG
AACTGCCGCGACACCCCGGGGCTGTTCGTGCGAGAGGCCTCCGAGGCCGA
TCTGATCAAGGTCGTCAAGAGCCTCGACAGGAGCAACTGCGTTCCAGGCG
GGTGCAGCGATGGCATCAGCACTAGCGCCTCTTACTCCGCCTCCCCGGCG
TGGCTGGTCTCACGGTTGACGGGAGGCGGCGGCGGCGGCGGCAGCCGCGG
TGTGGCTCAAGAGAAGAGCGGGGAGAGCAAGGGTAAGGGCGGGCACGGGG
GGGTGTCGCCGCATGCCTTGGCCTCGGCGCTGGTGTACTTTTTGCACCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig760:29364..31563+

>mRNA_L-elsbetiae_contig760.16516.1 ID=mRNA_L-elsbetiae_contig760.16516.1|Name=mRNA_L-elsbetiae_contig760.16516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig760:29364..31563+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTCGTCGCCGGGTCACGGCGGTGTGGCGACGGCCGCTGCCGGAGCGGG
ACCCGGGGGGTATCCGGGGGCGTTCGTGATGGGCAGCGGTGGTCGGCCGG
GAGGGGCCAAGGGGAGGGGACGGGTCTTCGGCACCCCCTTGAAGGAGCTT
GTGCTCAATCCCGACAGCGCTCGTCGCCGGGTCACGGCGGTGTGGCGACG
GCCGCTGCCGGAGCGGGACCCGGGGGGTATCCGGGGGCGTTCGTGATGGG
CAGCGGTGGTCGGCCGGGAGGGGCCAAGGGGAGGGGACGGGTCTTCGGCA
CCCCCTTGAAGGAGCTTGTGCTCAATCCCGACAGGTGCCGCCGTGGCGTG
CTCGACCCTACGCTGGGGGTCCCGGATGCTGTACTGAGTCTGATCGAGGT
GCCGCCGTGGCGTGCTCGACCCTACGCTGGGGGTCCCGGATGCTGTACTG
AGTCTGATCGAGGCACTGTCCGAGGAGAACTGCCGCGACACCCCGGGGCT
GTTCGTGCGAGAGGCCTCCGAGGCCGATCTGATCAAGGTCGTCAAGAGCC
TCGACAGGAGCAACTGCGTTCCAGGCGGGTGCAGCGATGGCATCAGCACT
AGCGCCTCTTACTCCGCCTCCCCGGCGTGGCTGGTCTCACGGTTGACGGG
AGGCGGCGGCGGCGGCGGCAGCCGCGGTGTGGCTCAAGAGAAGAGCGGGG
AGAGCAAGGGTAAGGGCGGGCACGGGGGGGTGTCGCCGCATGCCTTGGCC
TCGGCGCTGGTGTACTTTTTGCACCGAGCACTGTCCGAGGAGAACTGCCG
CGACACCCCGGGGCTGTTCGTGCGAGAGGCCTCCGAGGCCGATCTGATCA
AGGTCGTCAAGAGCCTCGACAGGAGCAACTGCGTTCCAGGCGGGTGCAGC
GATGGCATCAGCACTAGCGCCTCTTACTCCGCCTCCCCGGCGTGGCTGGT
CTCACGGTTGACGGGAGGCGGCGGCGGCGGCGGCAGCCGCGGTGTGGCTC
AAGAGAAGAGCGGGGAGAGCAAGGGTAAGGGCGGGCACGGGGGGGTGTCG
CCGCATGCCTTGGCCTCGGCGCTGGTGTACTTTTTGCACCGA
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