mRNA_L-elsbetiae_contig760.16511.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig760.16511.1
Unique NamemRNA_L-elsbetiae_contig760.16511.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig760.16511.1 vs. uniprot
Match: D8LHU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.270e-9
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  412 ASAGTTAPGSGARPAARSWDDVSRQRGQGRHASTGMGRPAATVEPPGNNWALGGV 576
            AS+ T +  SG  PAARSW DVSRQ+G+GRHA  G+GR  A  EPPG+ WALGG 
Sbjct: 1449 ASSHTPSARSGRPPAARSWGDVSRQQGKGRHAVPGVGRAVAVGEPPGDEWALGGA 1503
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BLAST of mRNA_L-elsbetiae_contig760.16511.1 vs. uniprot
Match: A0A6H5KEN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.370e-5
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  412 ASAGTTAPGSGARPAARSWDDVSRQRGQGRHASTGMGRPAATVEPPGNNWALGGVR 579
            AS+ T +  SG   AARSW DVSRQ+G+GRHA  G+G+     EP G+ WA GG R
Sbjct:  349 ASSHTPSASSGRVRAARSWGDVSRQQGKGRHAVPGVGQAVGVGEPLGDEWASGGAR 404
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig760.16511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU6_ECTSI4.270e-961.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEN8_9PHAE1.370e-553.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig760contigL-elsbetiae_contig760:11423..12342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue8.5e-09
Seed eggNOG ortholog2880.D8LHU6
Preferred nameHFM1
KEGG koko:K15271
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000712,GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0061982,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:0140098,GO:1901360,GO:1901576,GO:1903046
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons2
Model size590
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.5129654-CDS-L-elsbetiae_contig760:11422..115721622816844.5129654-CDS-L-elsbetiae_contig760:11422..11572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 11423..11572 +
1691683856.4773924-CDS-L-elsbetiae_contig760:11422..115721691683856.4773924-CDS-L-elsbetiae_contig760:11422..11572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 11423..11572 +
1622816844.5240693-CDS-L-elsbetiae_contig760:11903..123411622816844.5240693-CDS-L-elsbetiae_contig760:11903..12341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 11904..12341 +
1691683856.4894617-CDS-L-elsbetiae_contig760:11903..123411691683856.4894617-CDS-L-elsbetiae_contig760:11903..12341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 11904..12341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig760.16511.1prot_L-elsbetiae_contig760.16511.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig760 11423..12341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig760.16511.1

>prot_L-elsbetiae_contig760.16511.1 ID=prot_L-elsbetiae_contig760.16511.1|Name=mRNA_L-elsbetiae_contig760.16511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
RSARRTVDTSNASLDFGGGDGDGGGGGDGGGAVVDLFPRSLGSALSGPPG
ARSSPQQHQRSQRPPQQQQQQPASISSFAYNPTPLPPPPQAIAPPPPGHA
GTDPGAASQWQQQPQRRHRMGGGAGPEPSAGTVTHASASAGTTAPGSGAR
PAARSWDDVSRQRGQGRHASTGMGRPAATVEPPGNNWALGGVRQRG
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mRNA from alignment at L-elsbetiae_contig760:11423..12342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig760.16511.1 ID=mRNA_L-elsbetiae_contig760.16511.1|Name=mRNA_L-elsbetiae_contig760.16511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=920bp|location=Sequence derived from alignment at L-elsbetiae_contig760:11423..12342+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTCCGCCCGCCGAACGGTGGACACGAGTAACGCCTCTCTGGACTTTGG
GGGGGGTGATGGCGATGGTGGTGGGGGGGGTGATGGCGGCGGCGCCGTCG
TCGACCTGTTCCCCAGGTCCCTCGGCAGCGCGTTGTCTGGGCCCCCAGGG
GTGAGAGTGAGGGTGGCGTGGGAAGATTGTGTTCAGTTTGAGGGAAAGAC
ATTTCGTGCCCGCTGCTTCCTTGTTGGTCAACACTCATTTGCGGTGCGAA
AGGCGTTCGGTGAGTAGGGTGCGGGGAGACGACATATCGCCCAAAATTTC
GCGGGCTGGATGGAGGCTCTTTATGATCACGCCTGGGCTCGGACGGACAT
GAATCGGCAGGCCGGCAGACAAACAGATTGCGGTACCCCCCGCCACGGCT
TTCTACACGCTAAAACGGGTACACTTTGCCACGCTGACTTTGTACTCCCT
CTTCCCCAAACTGAACGGTTTTCTATGGCAGGCGCGGAGCAGCCCGCAAC
AGCATCAGCGGTCGCAACGGCCACCGCAGCAGCAGCAGCAGCAGCCTGCC
AGCATATCGTCATTCGCCTACAACCCAACGCCGCTGCCGCCGCCGCCGCA
GGCGATAGCGCCACCCCCTCCTGGCCACGCCGGCACTGACCCCGGAGCCG
CATCGCAGTGGCAGCAGCAGCCGCAACGGCGGCACCGGATGGGCGGCGGC
GCCGGCCCCGAACCCTCCGCGGGGACGGTCACTCACGCAAGCGCCTCGGC
AGGCACGACCGCCCCCGGAAGCGGCGCTCGGCCGGCGGCGCGATCATGGG
ACGACGTCTCGAGGCAGCGGGGGCAGGGGCGCCACGCCTCCACCGGCATG
GGGCGACCAGCGGCCACCGTCGAGCCCCCCGGAAACAACTGGGCGCTGGG
GGGGGTGCGGCAGCGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig760:11423..12342+

>mRNA_L-elsbetiae_contig760.16511.1 ID=mRNA_L-elsbetiae_contig760.16511.1|Name=mRNA_L-elsbetiae_contig760.16511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig760:11423..12342+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTCCGCCCGCCGAACGGTGGACACGAGTAACGCCTCTCTGGACTTTGG
GGGGGGTGATGGCGATGGTGGTGGGGGGGGTGATGGCGGCGGCGCCGTCG
TCGACCTGTTCCCCAGGTCCCTCGGCAGCGCGTTGTCTGGGCCCCCAGGG
CGCTCCGCCCGCCGAACGGTGGACACGAGTAACGCCTCTCTGGACTTTGG
GGGGGGTGATGGCGATGGTGGTGGGGGGGGTGATGGCGGCGGCGCCGTCG
TCGACCTGTTCCCCAGGTCCCTCGGCAGCGCGTTGTCTGGGCCCCCAGGG
GCGCGGAGCAGCCCGCAACAGCATCAGCGGTCGCAACGGCCACCGCAGCA
GCAGCAGCAGCAGCCTGCCAGCATATCGTCATTCGCCTACAACCCAACGC
CGCTGCCGCCGCCGCCGCAGGCGATAGCGCCACCCCCTCCTGGCCACGCC
GGCACTGACCCCGGAGCCGCATCGCAGTGGCAGCAGCAGCCGCAACGGCG
GCACCGGATGGGCGGCGGCGCCGGCCCCGAACCCTCCGCGGGGACGGTCA
CTCACGCAAGCGCCTCGGCAGGCACGACCGCCCCCGGAAGCGGCGCTCGG
CCGGCGGCGCGATCATGGGACGACGTCTCGAGGCAGCGGGGGCAGGGGCG
CCACGCCTCCACCGGCATGGGGCGACCAGCGGCCACCGTCGAGCCCCCCG
GAAACAACTGGGCGCTGGGGGGGGTGCGGCAGCGGGGGGCGCGGAGCAGC
CCGCAACAGCATCAGCGGTCGCAACGGCCACCGCAGCAGCAGCAGCAGCA
GCCTGCCAGCATATCGTCATTCGCCTACAACCCAACGCCGCTGCCGCCGC
CGCCGCAGGCGATAGCGCCACCCCCTCCTGGCCACGCCGGCACTGACCCC
GGAGCCGCATCGCAGTGGCAGCAGCAGCCGCAACGGCGGCACCGGATGGG
CGGCGGCGCCGGCCCCGAACCCTCCGCGGGGACGGTCACTCACGCAAGCG
CCTCGGCAGGCACGACCGCCCCCGGAAGCGGCGCTCGGCCGGCGGCGCGA
TCATGGGACGACGTCTCGAGGCAGCGGGGGCAGGGGCGCCACGCCTCCAC
CGGCATGGGGCGACCAGCGGCCACCGTCGAGCCCCCCGGAAACAACTGGG
CGCTGGGGGGGGTGCGGCAGCGGGGG
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