mRNA_L-elsbetiae_contig760.16510.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig760.16510.1
Unique NamemRNA_L-elsbetiae_contig760.16510.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig760.16510.1 vs. uniprot
Match: A0A6H5KEN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.450e-6
Identity = 47/109 (43.12%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:   25 RQLDLASSFKAGQRAQSDSARKRSRTAADAXXXXXXXXXXXXXXTQIEAATAHHA-GRPSERRTMSRGDLGGIGVSEAGDDLGVSPGSTDVLTKRKAGDDAVGAGAPYR 348
            RQLDLASSFKAG  A S+S R+ +     A              ++  A     A  +PSE   M RG+LG IGVSEAGDDLG+ P +     KRKAG D  G   P +
Sbjct:  100 RQLDLASSFKAG--ALSESTRQGNTLIWLAWGWAAEYCHFVAGASRGGAGGGGAAKAKPSEG--MDRGELGAIGVSEAGDDLGI-PTAPGRPAKRKAGSDTAGTSTPAK 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig760.16510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEN8_9PHAE2.450e-643.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig760contigL-elsbetiae_contig760:7098..9729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig760.16510.1prot_L-elsbetiae_contig760.16510.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig760 7098..9729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.44444-CDS-L-elsbetiae_contig760:7097..71831622816844.44444-CDS-L-elsbetiae_contig760:7097..7183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 7098..7183 +
1691683856.4476233-CDS-L-elsbetiae_contig760:7097..71831691683856.4476233-CDS-L-elsbetiae_contig760:7097..7183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 7098..7183 +
1622816844.4631932-CDS-L-elsbetiae_contig760:7906..81231622816844.4631932-CDS-L-elsbetiae_contig760:7906..8123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 7907..8123 +
1691683856.4585552-CDS-L-elsbetiae_contig760:7906..81231691683856.4585552-CDS-L-elsbetiae_contig760:7906..8123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 7907..8123 +
1622816844.4768634-CDS-L-elsbetiae_contig760:9675..97291622816844.4768634-CDS-L-elsbetiae_contig760:9675..9729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 9676..9729 +
1691683856.4671414-CDS-L-elsbetiae_contig760:9675..97291691683856.4671414-CDS-L-elsbetiae_contig760:9675..9729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig760 9676..9729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig760.16510.1

>prot_L-elsbetiae_contig760.16510.1 ID=prot_L-elsbetiae_contig760.16510.1|Name=mRNA_L-elsbetiae_contig760.16510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
GAYGSGGGRQLDLASSFKAGQRAQSDSARKRSRTAADAAAAAEGGSRGGG
GTTQIEAATAHHAGRPSERRTMSRGDLGGIGVSEAGDDLGVSPGSTDVLT
KRKAGDDAVGAGAPYRQRP
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mRNA from alignment at L-elsbetiae_contig760:7098..9729+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig760.16510.1 ID=mRNA_L-elsbetiae_contig760.16510.1|Name=mRNA_L-elsbetiae_contig760.16510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2632bp|location=Sequence derived from alignment at L-elsbetiae_contig760:7098..9729+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTTATGGTTCGGGCGGCGGAAGGCAGCTGGATCTGGCGTCGTCGTT
CAAGGCCGGGCAGCGTGCTCAGTCGGACTCGGCCAGGCGAGAGCGGCAGA
GGAGAGGGAGTGGGATGGGGTGGGGTGTTGTTCGGGGCTGTTGGAGTGTT
GGGTGGAGTTGATGATGGGAGGGGTGTTGGAGCGGTGGCGGTCTCGCTGT
TTGTCTGCACTTCCGTACTTGGCGGTCGTGGTGGTGGTGGTGCTGCTGCT
GCCGCTGATGATGGTGCTGCTTTGGTTGTCCCTGGTGCCGTAAGGCGCGT
CGCCTCGTTGAACGATGTGGACGTGTCGGCGGATGAATCCTCGCTGGCGG
ATGTAGCTTTGCCCTTGGCTGGCGCAGTGTTTCGGCTGCCCCGATTATTC
TCGTCAAAGACCCATAGCAAGAGCGCTTCCCCCCACGCTAAGCCTGCTTT
CGCACAAAAGATCATCAGCAGCCGGGGCTAAGGCACACAGGGGTGGCGTC
GGCGTGTAGAGGGGCTCTTGCAAGTCATCGTCGGTTGCACAGAGATCAGT
CCGAGCGCCTGATGCAGACAAGTCTGACGCTCACCGCTTGAGACTTAAGA
TTTCAAGACTTAAGAACCCTACCCCAGGCTTGTGCGCGCTTCATACCCCG
CTCTGCAAACCGCCGGTATGAATGAACCGTTCAAAAGCAAACCTCTGACG
ACCCGCTCGCCGTAAAAAGAAGCTGTCGTCGTTCAACGTGTCCCTGGCGT
TTCCTTTCTTCGATCCAATCCAACGTACCGTAACTCCGAAAAACAAAAAC
GATGCGCAGGAAGCGCTCAAGAACAGCCGCGGACGCAGCAGCCGCGGCAG
AAGGCGGCAGCCGGGGCGGCGGGGGCACCACGCAAATCGAGGCCGCTACA
GCCCATCACGCAGGGCGGCCGTCGGAGAGAAGGACGATGAGCAGAGGGGA
CCTTGGCGGTATCGGCGTGTCTGAGGCAGGGGATGACCTTGGCGTGTCCC
CGGGGTCGACTGACGTGCTCACGAAGGTATGTTGGGTGGTCGAGGGGCTC
ATTGGCGTGTTGGGCCCCGAGTTGTTGGATTAGATGCATGTATGTTCTCC
GTGGTTTGCGGCAGCGTGCCTCGGGGTTTGTTGGTTGGTATCGGCCCGAT
ACGACGGCGTGCGTTCGTGCATCGCGGTCGATAGGCGGGCTGCTAGGCTC
TCGGTGCAAGCTTTGGGCTTGCAGCTCGCAAAAAATGTTGTGCTCTCCGT
TTATTCACTCTTGCGGGGTGTGTGAAAACGGGGGAAAACTGGCTCTTGTT
GAAGACCTTTTATTTGTATTGTCGGTGACCTATTCAGCGCCTCGATTATT
TGTCTCTGTTCGAAATGCGAGGAAAGATCGTACGGCCAGCGTCTATTTTC
AGTTGGGGTCGACCAGAAACCGGGTAGAAAAGCTTACGCCTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGCTGTTGTCTTCACATTAAAAACCGTTCCGG
TCTCTCCATCCAGTACCTCCATAAGTCCGTACTAATCCAGCACTGATGCG
GTCGCTTCCCATGGTCACAAGTTAACTTACCCTAGAAAGCGTATTGCAGT
AAAGAAATGGGCAACGGCCAAAGCAAGGTATACCGTGAACTTTTCCGGCC
AAAATAGGGTGTCCTATTTATTCCGTGTATCAAGTGAAAATTCCTACCTC
GAGCACCCTCTTTAGGCCGGAAAAGTACAAGTATACCTCGGCGTGGCTAC
TCAACTCCTGGCTTCACCTTGTTTTGCCGCTCGTTTACCCTTTTTTGGCC
GGAAACCGGGGCTATTTGTCCAGGGACAGGACCTTTGTGAGCTGATAACC
CACGAGAAAAGTGCTCCACCTGCTTGATACATTTTCCCGTGCGGATGCTC
CCTAAACCAAATTCCTTACTTACCCTACCCCCAATAAGCCAACTGAATAG
CCCCGCCGTCACACTACTGCTGTACGCAGTTGCACGGCGGATTGTCTACC
CCGCTCCCGAACATTTATCTAGACAACGTTGCTGGCTTCATTAACGCCTC
GCACGGGTTAGACTCTACTTTGATGGTCATGGGACAGCCTCCGAGACCCA
ATGTACGCGAGGTTGGGCCTGGTAGGCCCTGCACGTTGACATTCGGTAAA
TGCCACCTATAACCTGTTTTGCCCGTCTAACCGTAAGGTATACCTTTGTT
TGACCGTTGCCCTAGAGAAATCCCTTTTGAAATTCCCGCCACGAAAACTC
TTTTCGTTGACACAGTTACATATTGCGAAAAATAAACACCTTTTAAAGTA
CTCGTCACGAAAGTTCTTTCCAGTTACGGAGTAGAAACTCTCGAGAGGAG
AGCACACATTCGGGGCCAACAGCTCCCGGGTCGAGTTAATAAAAATACAA
CAATACAAAAATAGGTCAACACGAGGCGGATCACTCTCTTTATTGCAAAC
AGCACACAGCGGGGGAAGCACTGTTTGATGCCGTCATGTCGTTTCCCATG
CACTGTGGGTTCAAAACGTTCCAACCCTCCTATTCTCTTGTTTTGGGTTC
CGCATGGTTTTCGCCTGCCGGCACACAGCGCAAAGCCGGGGACGATGCCG
TCGGTGCCGGAGCCCCTTACCGCCAACGGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig760:7098..9729+

>mRNA_L-elsbetiae_contig760.16510.1 ID=mRNA_L-elsbetiae_contig760.16510.1|Name=mRNA_L-elsbetiae_contig760.16510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig760:7098..9729+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTTATGGTTCGGGCGGCGGAAGGCAGCTGGATCTGGCGTCGTCGTT
CAAGGCCGGGCAGCGTGCTCAGTCGGACTCGGCCAGGGTGCTTATGGTTC
GGGCGGCGGAAGGCAGCTGGATCTGGCGTCGTCGTTCAAGGCCGGGCAGC
GTGCTCAGTCGGACTCGGCCAGGAAGCGCTCAAGAACAGCCGCGGACGCA
GCAGCCGCGGCAGAAGGCGGCAGCCGGGGCGGCGGGGGCACCACGCAAAT
CGAGGCCGCTACAGCCCATCACGCAGGGCGGCCGTCGGAGAGAAGGACGA
TGAGCAGAGGGGACCTTGGCGGTATCGGCGTGTCTGAGGCAGGGGATGAC
CTTGGCGTGTCCCCGGGGTCGACTGACGTGCTCACGAAGGAAGCGCTCAA
GAACAGCCGCGGACGCAGCAGCCGCGGCAGAAGGCGGCAGCCGGGGCGGC
GGGGGCACCACGCAAATCGAGGCCGCTACAGCCCATCACGCAGGGCGGCC
GTCGGAGAGAAGGACGATGAGCAGAGGGGACCTTGGCGGTATCGGCGTGT
CTGAGGCAGGGGATGACCTTGGCGTGTCCCCGGGGTCGACTGACGTGCTC
ACGAAGCGCAAAGCCGGGGACGATGCCGTCGGTGCCGGAGCCCCTTACCG
CCAACGGCCCCGCAAAGCCGGGGACGATGCCGTCGGTGCCGGAGCCCCTT
ACCGCCAACGGCCC
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