mRNA_L-elsbetiae_contig76.16506.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig76.16506.1
Unique NamemRNA_L-elsbetiae_contig76.16506.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig76.16506.1 vs. uniprot
Match: D7FX96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX96_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 9.330e-103
Identity = 357/714 (50.00%), Postives = 401/714 (56.16%), Query Frame = 1 
Query:    1 MNHDIHGGDTPADDFDLWWG-----------AGPTRNEEQHHTNHLGDMSSGIGSSTPAPSAATHGGSSXXXXXXXXXGSLNPTTSTLMGSLWSSGGAPHLEAYGHRHHVHGSQGED----------GVHGSSSPPSASSRRAWLPPPGQH-HQHSTISTDGAASPSNRIGQAVVGDVAAAXXXXXXXXXXXXSLSQPTA-------GMNSSRTGDSSISGNNVDHKLEELAAAITASVLGKLDTGVWEALATGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------VAPLRSRLAALEEQTSRLMARSSAGNGDGGDTSRGGRATSGGVGGXXXXXXXXXXXXXXX---AEPLLALNALAQRTGTLEGRHKQVQAKVALLDNAFGPKASDWAQTIKAFIQER--EATAGGGGRAVAVAVRPTGGGGSCSGSKGGRKPLAIDAPVFSPQSA--RDISRGCGKGNNAYGGAGAAAGSP-----VVVAGARRVESAPEILRAAQGGDAAVAGAAVASEAATAGVREGAVDKGCAACAQTRERCSRLEQRLAKSERTLSLLQGRTAAVAXXXXXXXXXXXXXDAVKAWEVEEGSRRDAAVEKAVSSDVLGRQQKAMAAGGGGNWASKASLEKLASELRQLSARAKDGEDTLALVDHGLKGVREEMAPLSGSVSVLKRLVETHLREKEQAAELLKGYVTTITREV 1989
            MN  ++GGD PADDFDL+WG           +G   N E      L D++SG      +P   T  GSS         G+LN  T TLMGSLWS    P  EAYGH  HVH SQ E            +HG S                   HQHS    DG    S +  Q +                     ++PTA       G N   TG   +SG+ V++KLEELAA ITASV+GKL+  V EAL  G QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          VAPLRSRLAALEEQ  RL A S +G+G  GD   GGR T  GV G     XXXXXXXXX    AEP+ AL ALAQRTGTLEGRHKQ+QAKVALLDN+FGPKASDWAQTIKAF+QER  E  AG  GRA AV V   G        KGG++ L IDAP F PQSA  R  +  C                      V V GA+  ESAPE++ A QG   A      A  AATA        + CA CA+T+ERCSRLE+R+A+SER LSLLQ +     XXXXXXXXXXXXX                                        NWASK S+EKLA+ LRQL+AR KDGED LALVDHGL+GVREEMAPLS SV  LKRLVE+ LREK+QAAELLKGYVTTITREV
Sbjct:    1 MNEGLNGGD-PADDFDLFWGMPRSGGGDGGSSGSGINHESRGGGGLTDVTSGGAGLMSSP---TLSGSSSRA------GNLNTATPTLMGSLWSHSSMP-PEAYGHSLHVHASQAEGPAPTAAGLNADLHGGSPXXXXXXXXXXXXXXXXXXHQHSAGRGDGMHVSSRQRQQHL------------PATSPPRQPARPTAVTDARGRGRNGGETG---VSGSIVEYKLEELAAVITASVVGKLEVDVREALWAGNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAVEATVAPLRSRLAALEEQMIRLSAASRSGSGSSGD---GGRDTPRGVRGNSSGSXXXXXXXXXGNAAAEPIAALTALAQRTGTLEGRHKQLQAKVALLDNSFGPKASDWAQTIKAFLQERVSEPAAGAAGRA-AVTVGTRG--------KGGKRGLGIDAPAFVPQSAAQRSTAAVCASXXXXXXXXXXXXXXXXXXXXVDVEGAKHEESAPEVVGAVQGDSTAADKPTAAKGAATATAAAAGKLQRCAGCAETQERCSRLEKRVAESERALSLLQSQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------NWASKTSVEKLAAALRQLAARTKDGEDALALVDHGLRGVREEMAPLSRSVLTLKRLVESQLREKDQAAELLKGYVTTITREV 669
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig76.16506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX96_ECTSI9.330e-10350.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig76contigL-elsbetiae_contig76:16042..18212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2007
Cds size2007
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.9313848-CDS-L-elsbetiae_contig76:16041..161791622816843.9313848-CDS-L-elsbetiae_contig76:16041..16179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 16042..16179 -
1691683856.0765998-CDS-L-elsbetiae_contig76:16041..161791691683856.0765998-CDS-L-elsbetiae_contig76:16041..16179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 16042..16179 -
1622816843.9428723-CDS-L-elsbetiae_contig76:16343..182121622816843.9428723-CDS-L-elsbetiae_contig76:16343..18212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 16344..18212 -
1691683856.0865977-CDS-L-elsbetiae_contig76:16343..182121691683856.0865977-CDS-L-elsbetiae_contig76:16343..18212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 16344..18212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig76.16506.1prot_L-elsbetiae_contig76.16506.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig76 16042..18212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig76.16506.1

>prot_L-elsbetiae_contig76.16506.1 ID=prot_L-elsbetiae_contig76.16506.1|Name=mRNA_L-elsbetiae_contig76.16506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=669bp
MNHDIHGGDTPADDFDLWWGAGPTRNEEQHHTNHLGDMSSGIGSSTPAPS
AATHGGSSRGGSSRVGSGSLNPTTSTLMGSLWSSGGAPHLEAYGHRHHVH
GSQGEDGVHGSSSPPSASSRRAWLPPPGQHHQHSTISTDGAASPSNRIGQ
AVVGDVAAAAATAATAPSSSSSLSQPTAGMNSSRTGDSSISGNNVDHKLE
ELAAAITASVLGKLDTGVWEALATGQQQQQQQQQQESSSVSFTSAASEDG
RRQTEAAVVAAVAPLRSRLAALEEQTSRLMARSSAGNGDGGDTSRGGRAT
SGGVGGGVGLGHGGGGGSAAAAEPLLALNALAQRTGTLEGRHKQVQAKVA
LLDNAFGPKASDWAQTIKAFIQEREATAGGGGRAVAVAVRPTGGGGSCSG
SKGGRKPLAIDAPVFSPQSARDISRGCGKGNNAYGGAGAAAGSPVVVAGA
RRVESAPEILRAAQGGDAAVAGAAVASEAATAGVREGAVDKGCAACAQTR
ERCSRLEQRLAKSERTLSLLQGRTAAVAATAATAAAATAAADAVKAWEVE
EGSRRDAAVEKAVSSDVLGRQQKAMAAGGGGNWASKASLEKLASELRQLS
ARAKDGEDTLALVDHGLKGVREEMAPLSGSVSVLKRLVETHLREKEQAAE
LLKGYVTTITREVREFLY*
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mRNA from alignment at L-elsbetiae_contig76:16042..18212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig76.16506.1 ID=mRNA_L-elsbetiae_contig76.16506.1|Name=mRNA_L-elsbetiae_contig76.16506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2171bp|location=Sequence derived from alignment at L-elsbetiae_contig76:16042..18212- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCACGATATCCACGGCGGAGACACGCCCGCAGATGATTTTGATCT
ATGGTGGGGTGCGGGCCCAACAAGAAATGAAGAGCAACACCATACGAACC
ACCTTGGCGACATGAGCAGCGGCATCGGCAGCTCGACGCCTGCTCCTTCG
GCTGCGACCCACGGCGGCAGCAGCCGTGGTGGCAGCAGCCGCGTCGGAAG
CGGAAGCCTCAACCCAACGACGTCGACGCTCATGGGAAGCCTGTGGTCTT
CTGGCGGTGCACCTCACCTTGAAGCGTACGGCCACCGGCACCACGTCCAC
GGGAGTCAAGGGGAAGACGGCGTGCATGGATCGTCTTCGCCCCCATCTGC
GAGCTCACGGAGAGCGTGGCTGCCGCCCCCCGGCCAGCACCACCAACACT
CAACGATAAGTACTGATGGAGCAGCTTCCCCAAGCAATCGTATTGGCCAA
GCGGTAGTAGGTGACGTTGCGGCTGCTGCGGCTACCGCTGCCACTGCACC
GTCGTCGTCGTCGTCGTTGTCGCAGCCGACGGCCGGGATGAACAGCAGTC
GTACAGGCGACAGCAGTATCAGTGGCAACAACGTGGACCATAAGCTGGAG
GAGCTCGCGGCGGCGATCACGGCTTCCGTACTAGGCAAGCTCGATACCGG
TGTTTGGGAAGCCTTGGCTACAGGCCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAAGAGAGCAGCAGTGTATCGTTTACCTCGGCGGCTTCCGAGGACGGT
CGGAGACAGACGGAGGCGGCGGTGGTGGCCGCGGTAGCCCCTTTGCGCTC
CAGGCTCGCGGCTCTCGAGGAACAGACGTCTCGGCTCATGGCTCGCAGCA
GCGCTGGCAACGGGGATGGCGGTGATACCAGTAGAGGTGGTCGCGCAACC
AGCGGTGGTGTTGGGGGCGGGGTAGGTTTGGGGCATGGCGGGGGCGGCGG
GAGTGCAGCTGCGGCGGAGCCACTGCTCGCTCTGAACGCACTTGCCCAGC
GCACGGGCACCCTCGAGGGCAGGCACAAGCAGGTACAGGCCAAGGTCGCA
CTGCTGGACAATGCCTTTGGTCCCAAGGCGTCGGACTGGGCTCAGACCAT
CAAAGCGTTTATTCAAGAGCGGGAGGCAACCGCGGGAGGCGGCGGAAGAG
CGGTCGCCGTGGCGGTGCGCCCCACCGGTGGCGGTGGCAGCTGCAGTGGA
AGCAAGGGAGGGAGAAAACCCTTAGCAATCGACGCCCCGGTCTTCTCTCC
GCAGTCGGCCCGTGATATCAGCAGAGGGTGTGGCAAGGGCAACAACGCTT
ACGGAGGGGCAGGAGCAGCAGCCGGCTCGCCCGTTGTCGTCGCCGGTGCG
AGGCGCGTTGAAAGCGCGCCCGAGATCTTGCGGGCGGCGCAGGGCGGTGA
TGCCGCTGTTGCGGGTGCAGCGGTAGCATCGGAGGCGGCGACGGCGGGGG
TGAGAGAGGGGGCAGTCGACAAAGGTTGCGCGGCGTGCGCGCAGACGCGG
GAGCGCTGTAGTCGGCTCGAACAACGACTTGCAAAGTCGGAGAGGACGCT
ATCGCTGCTGCAGGGCAGGACAGCGGCGGTGGCGGCTACGGCGGCTACCG
CAGCAGCGGCTACGGCGGCCGCCGATGCCGTTAAGGCGTGGGAGGTCGAA
GAAGGCAGTAGGAGAGACGCGGCCGTAGAAAAGGCGGTGTCGTCAGACGT
GCTTGGACGGCAGCAGAAAGCGATGGCGGCGGGAGGGGGGGGCAACTGGG
CCTCAAAGGCGTCTCTAGAGAAGCTCGCGAGTGAGCTGAGGCAGCTTTCC
GCGAGAGCGAAAGATGGCGAGGACACGTTGGCGCTTGTAGATCACGGTCT
TAAGGGCGTCCGAGAGGAGGTGCGGTACAACTGGAGTACTGCTGTGTGTT
TGTGGGGATGGTAGCAGAGCAGCAGTACATAGCAGCAGCAGCTGAAAATA
GCTGTAGTTCGCACCCAGGACCAGCACCCAGCAGTCGTGTTCCCAAACCC
CATATCTCCTACTCCTCGCGTGCGTGCATACAGATGGCGCCGCTGTCCGG
CTCAGTGTCTGTCTTGAAGAGACTGGTGGAGACGCACCTGAGGGAAAAGG
AGCAGGCGGCGGAACTGCTCAAGGGATATGTCACCACTATAACCCGGGAG
GTGAGGGAGTTCTTGTATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig76:16042..18212-

>mRNA_L-elsbetiae_contig76.16506.1 ID=mRNA_L-elsbetiae_contig76.16506.1|Name=mRNA_L-elsbetiae_contig76.16506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4014bp|location=Sequence derived from alignment at L-elsbetiae_contig76:16042..18212- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCACGATATCCACGGCGGAGACACGCCCGCAGATGATTTTGATCT
ATGGTGGGGTGCGGGCCCAACAAGAAATGAAGAGCAACACCATACGAACC
ACCTTGGCGACATGAGCAGCGGCATCGGCAGCTCGACGCCTGCTCCTTCG
GCTGCGACCCACGGCGGCAGCAGCCGTGGTGGCAGCAGCCGCGTCGGAAG
CGGAAGCCTCAACCCAACGACGTCGACGCTCATGGGAAGCCTGTGGTCTT
CTGGCGGTGCACCTCACCTTGAAGCGTACGGCCACCGGCACCACGTCCAC
GGGAGTCAAGGGGAAGACGGCGTGCATGGATCGTCTTCGCCCCCATCTGC
GAGCTCACGGAGAGCGTGGCTGCCGCCCCCCGGCCAGCACCACCAACACT
CAACGATAAGTACTGATGGAGCAGCTTCCCCAAGCAATCGTATTGGCCAA
GCGGTAGTAGGTGACGTTGCGGCTGCTGCGGCTACCGCTGCCACTGCACC
GTCGTCGTCGTCGTCGTTGTCGCAGCCGACGGCCGGGATGAACAGCAGTC
GTACAGGCGACAGCAGTATCAGTGGCAACAACGTGGACCATAAGCTGGAG
GAGCTCGCGGCGGCGATCACGGCTTCCGTACTAGGCAAGCTCGATACCGG
TGTTTGGGAAGCCTTGGCTACAGGCCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAAGAGAGCAGCAGTGTATCGTTTACCTCGGCGGCTTCCGAGGACGGT
CGGAGACAGACGGAGGCGGCGGTGGTGGCCGCGGTAGCCCCTTTGCGCTC
CAGGCTCGCGGCTCTCGAGGAACAGACGTCTCGGCTCATGGCTCGCAGCA
GCGCTGGCAACGGGGATGGCGGTGATACCAGTAGAGGTGGTCGCGCAACC
AGCGGTGGTGTTGGGGGCGGGGTAGGTTTGGGGCATGGCGGGGGCGGCGG
GAGTGCAGCTGCGGCGGAGCCACTGCTCGCTCTGAACGCACTTGCCCAGC
GCACGGGCACCCTCGAGGGCAGGCACAAGCAGGTACAGGCCAAGGTCGCA
CTGCTGGACAATGCCTTTGGTCCCAAGGCGTCGGACTGGGCTCAGACCAT
CAAAGCGTTTATTCAAGAGCGGGAGGCAACCGCGGGAGGCGGCGGAAGAG
CGGTCGCCGTGGCGGTGCGCCCCACCGGTGGCGGTGGCAGCTGCAGTGGA
AGCAAGGGAGGGAGAAAACCCTTAGCAATCGACGCCCCGGTCTTCTCTCC
GCAGTCGGCCCGTGATATCAGCAGAGGGTGTGGCAAGGGCAACAACGCTT
ACGGAGGGGCAGGAGCAGCAGCCGGCTCGCCCGTTGTCGTCGCCGGTGCG
AGGCGCGTTGAAAGCGCGCCCGAGATCTTGCGGGCGGCGCAGGGCGGTGA
TGCCGCTGTTGCGGGTGCAGCGGTAGCATCGGAGGCGGCGACGGCGGGGG
TGAGAGAGGGGGCAGTCGACAAAGGTTGCGCGGCGTGCGCGCAGACGCGG
GAGCGCTGTAGTCGGCTCGAACAACGACTTGCAAAGTCGGAGAGGACGCT
ATCGCTGCTGCAGGGCAGGACAGCGGCGGTGGCGGCTACGGCGGCTACCG
CAGCAGCGGCTACGGCGGCCGCCGATGCCGTTAAGGCGTGGGAGGTCGAA
GAAGGCAGTAGGAGAGACGCGGCCGTAGAAAAGGCGGTGTCGTCAGACGT
GCTTGGACGGCAGCAGAAAGCGATGGCGGCGGGAGGGGGGGGCAACTGGG
CCTCAAAGGCGTCTCTAGAGAAGCTCGCGAGTGAGCTGAGGCAGCTTTCC
GCGAGAGCGAAAGATGGCGAGGACACGTTGGCGCTTGTAGATCACGGTCT
TAAGGGCGTCCGAGAGGAGATGAACCACGATATCCACGGCGGAGACACGC
CCGCAGATGATTTTGATCTATGGTGGGGTGCGGGCCCAACAAGAAATGAA
GAGCAACACCATACGAACCACCTTGGCGACATGAGCAGCGGCATCGGCAG
CTCGACGCCTGCTCCTTCGGCTGCGACCCACGGCGGCAGCAGCCGTGGTG
GCAGCAGCCGCGTCGGAAGCGGAAGCCTCAACCCAACGACGTCGACGCTC
ATGGGAAGCCTGTGGTCTTCTGGCGGTGCACCTCACCTTGAAGCGTACGG
CCACCGGCACCACGTCCACGGGAGTCAAGGGGAAGACGGCGTGCATGGAT
CGTCTTCGCCCCCATCTGCGAGCTCACGGAGAGCGTGGCTGCCGCCCCCC
GGCCAGCACCACCAACACTCAACGATAAGTACTGATGGAGCAGCTTCCCC
AAGCAATCGTATTGGCCAAGCGGTAGTAGGTGACGTTGCGGCTGCTGCGG
CTACCGCTGCCACTGCACCGTCGTCGTCGTCGTCGTTGTCGCAGCCGACG
GCCGGGATGAACAGCAGTCGTACAGGCGACAGCAGTATCAGTGGCAACAA
CGTGGACCATAAGCTGGAGGAGCTCGCGGCGGCGATCACGGCTTCCGTAC
TAGGCAAGCTCGATACCGGTGTTTGGGAAGCCTTGGCTACAGGCCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAAGAGAGCAGCAGTGTATCGTTTACCTC
GGCGGCTTCCGAGGACGGTCGGAGACAGACGGAGGCGGCGGTGGTGGCCG
CGGTAGCCCCTTTGCGCTCCAGGCTCGCGGCTCTCGAGGAACAGACGTCT
CGGCTCATGGCTCGCAGCAGCGCTGGCAACGGGGATGGCGGTGATACCAG
TAGAGGTGGTCGCGCAACCAGCGGTGGTGTTGGGGGCGGGGTAGGTTTGG
GGCATGGCGGGGGCGGCGGGAGTGCAGCTGCGGCGGAGCCACTGCTCGCT
CTGAACGCACTTGCCCAGCGCACGGGCACCCTCGAGGGCAGGCACAAGCA
GGTACAGGCCAAGGTCGCACTGCTGGACAATGCCTTTGGTCCCAAGGCGT
CGGACTGGGCTCAGACCATCAAAGCGTTTATTCAAGAGCGGGAGGCAACC
GCGGGAGGCGGCGGAAGAGCGGTCGCCGTGGCGGTGCGCCCCACCGGTGG
CGGTGGCAGCTGCAGTGGAAGCAAGGGAGGGAGAAAACCCTTAGCAATCG
ACGCCCCGGTCTTCTCTCCGCAGTCGGCCCGTGATATCAGCAGAGGGTGT
GGCAAGGGCAACAACGCTTACGGAGGGGCAGGAGCAGCAGCCGGCTCGCC
CGTTGTCGTCGCCGGTGCGAGGCGCGTTGAAAGCGCGCCCGAGATCTTGC
GGGCGGCGCAGGGCGGTGATGCCGCTGTTGCGGGTGCAGCGGTAGCATCG
GAGGCGGCGACGGCGGGGGTGAGAGAGGGGGCAGTCGACAAAGGTTGCGC
GGCGTGCGCGCAGACGCGGGAGCGCTGTAGTCGGCTCGAACAACGACTTG
CAAAGTCGGAGAGGACGCTATCGCTGCTGCAGGGCAGGACAGCGGCGGTG
GCGGCTACGGCGGCTACCGCAGCAGCGGCTACGGCGGCCGCCGATGCCGT
TAAGGCGTGGGAGGTCGAAGAAGGCAGTAGGAGAGACGCGGCCGTAGAAA
AGGCGGTGTCGTCAGACGTGCTTGGACGGCAGCAGAAAGCGATGGCGGCG
GGAGGGGGGGGCAACTGGGCCTCAAAGGCGTCTCTAGAGAAGCTCGCGAG
TGAGCTGAGGCAGCTTTCCGCGAGAGCGAAAGATGGCGAGGACACGTTGG
CGCTTGTAGATCACGGTCTTAAGGGCGTCCGAGAGGAGATGGCGCCGCTG
TCCGGCTCAGTGTCTGTCTTGAAGAGACTGGTGGAGACGCACCTGAGGGA
AAAGGAGCAGGCGGCGGAACTGCTCAAGGGATATGTCACCACTATAACCC
GGGAGGTGAGGGAGTTCTTGTATTGAATGGCGCCGCTGTCCGGCTCAGTG
TCTGTCTTGAAGAGACTGGTGGAGACGCACCTGAGGGAAAAGGAGCAGGC
GGCGGAACTGCTCAAGGGATATGTCACCACTATAACCCGGGAGGTGAGGG
AGTTCTTGTATTGA
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