mRNA_L-elsbetiae_contig76.16505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig76.16505.1
Unique NamemRNA_L-elsbetiae_contig76.16505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig76.16505.1 vs. uniprot
Match: D8LCH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH2_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 6.080e-81
Identity = 137/186 (73.66%), Postives = 156/186 (83.87%), Query Frame = 1 
Query:    1 MEHRALRLPRVEPLLHVPISVIVEFVSNRSEAEVLLRIGDLAHEFDHLTASLVQWLEHQQYLRIDS---QEHLPALGAGQSLASSLVPLTHQASAANRYGVRLLQQKISDTLAQLQRHMDAVEVFSNQNASFSQELQLCGLRERAEQRHRLAETESTLAGRLSKFLGGCDSFYDEQPLSLAMHFAA 549
            ME+RALRLPR EPLLHVP+S IVEFVSNRSEAEVLLRIGDL HEFDHLT +LVQWLEH+Q+L  D    +E  P   +G+SL  SLVPL HQA   NR+GVR+LQ+KI++ L QLQR+MDAV+VF+NQNASFSQEL+LCGL +RAEQR RLAETES L  RL+KFLGGCDSFYDEQPL LAM FAA
Sbjct:    1 MENRALRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPVEDSGESLVLSLVPLAHQARVVNRHGVRVLQEKITECLQQLQRYMDAVQVFANQNASFSQELRLCGLGDRAEQRRRLAETESALVRRLAKFLGGCDSFYDEQPLPLAMQFAA 186
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BLAST of mRNA_L-elsbetiae_contig76.16505.1 vs. uniprot
Match: A0A6H5JFN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN0_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.220e-75
Identity = 139/200 (69.50%), Postives = 156/200 (78.00%), Query Frame = 1 
Query:    1 MEHRALRLPRVEPLLHVPISVIVEFVSNRSEAEVLLRIGDLAHEFDHLTASLVQWLEHQQYLRIDS---QEHLPALGAGQSLASSLVPLTHQASAANRYGVRLLQQKISDTLAQLQRHM--------------DAVEVFSNQNASFSQELQLCGLRERAEQRHRLAETESTLAGRLSKFLGGCDSFYDEQPLSLAMHFAA 549
            ME RALRLPR EPLLHVP+S IVEFVSNRSEAEVLLRIGDL HEFDHLT +LVQWLEH+Q+L  D    +E  PA   G+SL  SLVPL HQA   NR+GVR+LQQKI++ L QLQR+M              DAV+VF++QNASFSQEL+LCGL +RAEQR RLAETES LA RL+KFLGGCDSFYDEQPL LAM FAA
Sbjct:   21 MEDRALRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPAEDTGESLVLSLVPLAHQARVVNRHGVRVLQQKITECLQQLQRYMVGVVQGDGFGKWTMDAVQVFADQNASFSQELRLCGLGDRAEQRRRLAETESALARRLAKFLGGCDSFYDEQPLPLAMQFAA 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig76.16505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH2_ECTSI6.080e-8173.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFN0_9PHAE1.220e-7569.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig76contigL-elsbetiae_contig76:6648..10686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1014
Cds size1014
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig76.16505.1prot_L-elsbetiae_contig76.16505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig76 6648..10686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.8386402-CDS-L-elsbetiae_contig76:6647..67401622816843.8386402-CDS-L-elsbetiae_contig76:6647..6740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 6648..6740 +
1691683855.998701-CDS-L-elsbetiae_contig76:6647..67401691683855.998701-CDS-L-elsbetiae_contig76:6647..6740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 6648..6740 +
1622816843.8545601-CDS-L-elsbetiae_contig76:7418..75051622816843.8545601-CDS-L-elsbetiae_contig76:7418..7505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 7419..7505 +
1691683856.0087-CDS-L-elsbetiae_contig76:7418..75051691683856.0087-CDS-L-elsbetiae_contig76:7418..7505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 7419..7505 +
1622816843.8659835-CDS-L-elsbetiae_contig76:7990..80721622816843.8659835-CDS-L-elsbetiae_contig76:7990..8072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 7991..8072 +
1691683856.021201-CDS-L-elsbetiae_contig76:7990..80721691683856.021201-CDS-L-elsbetiae_contig76:7990..8072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 7991..8072 +
1622816843.876232-CDS-L-elsbetiae_contig76:9133..92191622816843.876232-CDS-L-elsbetiae_contig76:9133..9219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 9134..9219 +
1691683856.037484-CDS-L-elsbetiae_contig76:9133..92191691683856.037484-CDS-L-elsbetiae_contig76:9133..9219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 9134..9219 +
1622816843.88692-CDS-L-elsbetiae_contig76:9598..96931622816843.88692-CDS-L-elsbetiae_contig76:9598..9693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 9599..9693 +
1691683856.0498955-CDS-L-elsbetiae_contig76:9598..96931691683856.0498955-CDS-L-elsbetiae_contig76:9598..9693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 9599..9693 +
1622816843.8980858-CDS-L-elsbetiae_contig76:10115..106861622816843.8980858-CDS-L-elsbetiae_contig76:10115..10686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 10116..10686 +
1691683856.0663319-CDS-L-elsbetiae_contig76:10115..106861691683856.0663319-CDS-L-elsbetiae_contig76:10115..10686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig76 10116..10686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig76.16505.1

>prot_L-elsbetiae_contig76.16505.1 ID=prot_L-elsbetiae_contig76.16505.1|Name=mRNA_L-elsbetiae_contig76.16505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=338bp
MEHRALRLPRVEPLLHVPISVIVEFVSNRSEAEVLLRIGDLAHEFDHLTA
SLVQWLEHQQYLRIDSQEHLPALGAGQSLASSLVPLTHQASAANRYGVRL
LQQKISDTLAQLQRHMDAVEVFSNQNASFSQELQLCGLRERAEQRHRLAE
TESTLAGRLSKFLGGCDSFYDEQPLSLAMHFAAGAASGGSAAAAAAAATV
AAPAVAPAAQSPAQPAASARAPAVAPTAVPPTATPAAPVISHSVPAPQRR
QHICAKEAERAHLAADNTDNPKHPGSGCTNACTEGSADREAPLPPLPARG
KAGASSIHRDAGAEEASTLGGDRCRKRRRRQQQQQLSQ
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mRNA from alignment at L-elsbetiae_contig76:6648..10686+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig76.16505.1 ID=mRNA_L-elsbetiae_contig76.16505.1|Name=mRNA_L-elsbetiae_contig76.16505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4039bp|location=Sequence derived from alignment at L-elsbetiae_contig76:6648..10686+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCACCGGGCCCTACGCTTACCTCGGGTTGAACCATTGCTTCATGT
ACCGATATCGGTTATCGTCGAGTTTGTCTCCAACAGGAGTGAGGTAAGGC
CGGAAAGTCGGTCTCGAAGCGTTGCATATGTATGTACGATACTCGAGATA
GAGGTGCGCACTAGTCTACTGCTGTTCGACTCCAACGGCCGTAATTGTTA
ATCATCAGCCGCACAGCAGTTGCTGGCGACATTCAAACGCGTGGAATCAA
GAGCTGATTACATATTAATATCCATATATATGGCGTGTCTGAGGCCTGCA
GCGTTCTATGCACAGCAGTGCAGCAGTAGTACACAGCAATGCGTTGTACT
GCCGGTGAAGAAGAACTGATGTTGCTACTGTCAACCATGCTGTGTGTACT
TTCCAGGCACGAAGGCCGGAAAGTGGTGTATCATAGACTAAACACGCGGA
ATCAGCCGAGAACGAATGAAAACTCCTCCGCGGTGCTGCTGCTCGATTGA
ATTGATTCCGTTTCATGCCCATGCAGCAGCAACAAACAAGGCCGCGGGGG
TCAACTGCTGTGCCGCGGGGGTCAACTGCCCGTTTGGCCCCTGTGCCGAG
CATGTTCGGGATTTTTTTCAATATTCCTCATGCCTGCTACATGAATCATA
AATACGTTTTTTATTGACCGAATCAAAGAATGCTGATGCCGGGCGTCCAA
TTAATTCGACGGCCGGGCCCTGTTTTTGTTTGTTTTCTGTTTGCTTCCTT
TGTGCTGATCGACGTGTCAAGGCCGAAGTGCTGCTGCGCATCGGAGACCT
TGCTCACGAGTTCGACCACCTGACGGCGTCGTTAGTGCAGTGGCTCGAGC
ATCAGCAGGTAGGTGGGGGGAAGCGCGCGGTCTTCGGAGTCAAGCGAGAT
AAAATAGAGAGGGTCGGGGGGGGTGGGACAAAGAGAAGAGAACGAGAAAG
AGAATCGCACAGGGTCAGTGAGCAAGTGTGCCTACAACAGGTTGACAGTC
TCCCCTCGGACGATTTTTTCACGGGTTAAACGTAGACCGCTAACGTTTTT
GTAGAAGCACTATTCAAGAACCTGAGAGACATGCGAAACAGACCACATAC
AAGTAGACGGGACAGGTTGACCAACAGACGGAGAGGTTCGCCTTCCAGCC
AACGGCTCTTTTGGGGGTTTGACCTTTAGGTTACATGCGCGCGGCGCTGC
TGTGCCGCTCCGCCGCAAAATGTCCGCGCGTCAACGCCCCCCGCCCCCCG
TTCGCGCCCCCTGTGCGTTGTCGGCGTGTTGCCCCATCTCGAAAAAACGC
ACACGCACACGCACACACGGACACGCACACACGACACGAAAAGTACCTGA
GGATCGACTCCCAGGAGCACCTGCCGGCTCTGGGCGCAGGGCAATCGCTG
GCGTCGTCGCTTGTGCCCCTGACACGTGAGTCCGCCTTTGTCACGGACAT
AACTATGTGTGGTAGAAATGAGTGGGGGTACGGCAGTAGATGGTGCCGTG
GCGATGCCAAGATCGGAGAGAGAGTTTCCTTCCCTCTGGTGGGACTCCGC
CGAAATATACACACACGTATACAAAATTCCCCTTCGGGGCGAGCTCATGA
GAGCACAGCGGCAGGAGGTGATGCAGGATCAAAGCAAACAGATGAAGGCA
GCAGAAGCACTCCTAAATTTACAACTGAAAATAACAGCAGCTGCTGTTTT
TGAGCACCGAAGCAGCAGCTGCTGTGCGTACTGAAACGAACAGCTGCTTC
TTTTCTGTGCTGAGGCTCCCTTGAACCGAACAGAGCTGGGCCGATCTGTG
CTCATGAGGTTCAATAGCTGCCAGTCTGCTAGCATGTGCTGCCATGCTCA
AAACATCTGCTGTCATACTGACGTTTTTTTTGGGCTACATATTAGAAGCC
GACAGCCCACTAGATTCAGAATCGGAACAGAAGTTCCCAGACCCTATTCT
GTATATTGTCATATTGGCACCCGATGAAAACGACTCGCGGAAGGAATCCG
GAGAAGTGTATTTCCAACGGTTTCGGCCGTTGGTTTCTTGATTCGGGTCG
ACCTTCTATCGTCATGTTGGAGGGTATCATCGGTATAAAGCTCAGCCACG
ACGAGAAGGGAAGCGTCGATGCCGAACTCTCGCGTCGATGCCGAGCTCTC
GTTACCGTGGCGCCGCTCTACCCTGTATCTACATACATAGATGGCATAAT
CTTGTGTGTGGTGTGGGTGTAATGTTTTATCTCCCTGCTTGCCTTTGATC
TGTTGTGATTTTCTCGCGCGCGCTTTAACCCAGCCGGAAGAGGGTCCTTA
GGATACCGGTACTCTCATCTGCAGGGCAGTACAGCCGAAATGCAGCATGC
CGACGCCCAAACCCTTCCCTCGGCGTGGCGCGCGGTTGGTGCTGCGCGAG
ATTCCTCTTTATAATGCAAACCTTTTGCGTGCTTTTTGTCGGTGCCTTTT
TCTTCTTCTTTTTTTCCCTTTTCGCGCGCGCCCCAGACCAGGCTAGTGCG
GCCAACAGGTACGGAGTCAGGCTGCTGCAGCAGAAGATTTCCGACACCCT
CGCCCAGCTGCAAAGACATATGGTGGGTGCCGGTATGTACAGATGGGCAT
GTTTTTTGCGAGAGAAAGGCGGGGGGCTCGTGGTCGGGGGGTGCACCTAT
AGGCTTCTTTCTTCGCGCCAGCCACACTTTCCTGGCGTTTGGTATTAGAC
CCACCCGTGCCCAGCCGACGGAAGCAAGCGGTGCAAAGCCAGGAGCGCGG
CGCGTGCGTTTGGGCCCCCTCCTCCGTCCGCATTAGTTTGAAGAGCCCCC
ATATACACCCCGGCTGATCAATGACAACGACAACAACAATAAAAACAGCG
ACGACAACAACAACAACAACAACAACAACGATGTTATGTACCACAGCAAA
AACAACAATAACAACAATAACAACAATAACAACATATACTCTTGGTCGCA
GGACGCCGTGGAGGTGTTTTCCAACCAGAACGCCTCGTTCTCGCAAGAGC
TGCAGCTCTGCGGCCTACGGGAGCGGGCGGAGCAGCGCCACCGACTGTGA
GTGCTCGTTGGGTCAGCCGTGCGTGCGTGCTAGCGTGGTCTTGTTTTCCG
ACGGATGGGAGCTGGTGTAGCTCCGTTCGGAGCGAGAGTGGCGGCGTCGG
TTCGCGTGCCCTTTTGGGTCGGGCATGATGAGCGGGACGCGAAGTGGAAC
GAGAGTATTGTTGGTCGCCCCGCTCGACCAGCGCGCGACATACGTCAGCT
GCGGTCGAAAGTCGGTTTGGTTGCGTCGTCGCCCTCGGTGCTATATGAGG
CATTTATCCCCCCCCATCCCCCAACCCCGTCCATCGTCACGTCGTGCTCC
CCGATCCCCTCTACCCCCCATTTACTTGTGTTATCTCAAACGCGCGTCCT
CTTTGGTGGGTACTATTTTTAATCTTTGCGTTTGTTTACAAAATTATTTG
TGACCTTCTCGCTTCCAGGGCGGAAACCGAGTCGACCCTGGCCGGTAGGC
TGTCAAAGTTCCTCGGCGGCTGCGACAGCTTTTACGACGAACAACCCTTA
TCCCTTGCAATGCACTTTGCCGCGGGAGCGGCCTCGGGGGGGAGTGCTGC
TGCGGCTGCTGCTGCTGCTACGGTGGCGGCGCCGGCGGTGGCGCCGGCAG
CCCAGTCACCAGCGCAACCAGCAGCATCGGCAAGAGCACCAGCGGTAGCG
CCAACAGCAGTGCCACCAACGGCAACACCAGCAGCTCCAGTAATTTCCCA
CTCGGTACCGGCGCCCCAGAGGCGGCAGCACATCTGCGCCAAGGAGGCGG
AAAGAGCGCATCTAGCAGCCGACAACACCGACAACCCAAAACACCCTGGC
AGTGGCTGCACAAATGCGTGTACCGAGGGCTCCGCGGACCGCGAAGCCCC
CCTGCCGCCGCTGCCGGCAAGGGGAAAAGCTGGAGCTAGCTCGATACATC
GCGATGCCGGTGCTGAGGAGGCGTCTACACTCGGAGGCGACCGCTGCCGC
AAGCGGCGGCGGCGGCAGCAGCAGCAGCAGCTCTCCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig76:6648..10686+

>mRNA_L-elsbetiae_contig76.16505.1 ID=mRNA_L-elsbetiae_contig76.16505.1|Name=mRNA_L-elsbetiae_contig76.16505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2028bp|location=Sequence derived from alignment at L-elsbetiae_contig76:6648..10686+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCACCGGGCCCTACGCTTACCTCGGGTTGAACCATTGCTTCATGT
ACCGATATCGGTTATCGTCGAGTTTGTCTCCAACAGGAGTGAGATGGAGC
ACCGGGCCCTACGCTTACCTCGGGTTGAACCATTGCTTCATGTACCGATA
TCGGTTATCGTCGAGTTTGTCTCCAACAGGAGTGAGGCCGAAGTGCTGCT
GCGCATCGGAGACCTTGCTCACGAGTTCGACCACCTGACGGCGTCGTTAG
TGCAGTGGCTCGAGCATCAGCAGGCCGAAGTGCTGCTGCGCATCGGAGAC
CTTGCTCACGAGTTCGACCACCTGACGGCGTCGTTAGTGCAGTGGCTCGA
GCATCAGCAGTACCTGAGGATCGACTCCCAGGAGCACCTGCCGGCTCTGG
GCGCAGGGCAATCGCTGGCGTCGTCGCTTGTGCCCCTGACACTACCTGAG
GATCGACTCCCAGGAGCACCTGCCGGCTCTGGGCGCAGGGCAATCGCTGG
CGTCGTCGCTTGTGCCCCTGACACACCAGGCTAGTGCGGCCAACAGGTAC
GGAGTCAGGCTGCTGCAGCAGAAGATTTCCGACACCCTCGCCCAGCTGCA
AAGACATATGACCAGGCTAGTGCGGCCAACAGGTACGGAGTCAGGCTGCT
GCAGCAGAAGATTTCCGACACCCTCGCCCAGCTGCAAAGACATATGGACG
CCGTGGAGGTGTTTTCCAACCAGAACGCCTCGTTCTCGCAAGAGCTGCAG
CTCTGCGGCCTACGGGAGCGGGCGGAGCAGCGCCACCGACTGACGCCGTG
GAGGTGTTTTCCAACCAGAACGCCTCGTTCTCGCAAGAGCTGCAGCTCTG
CGGCCTACGGGAGCGGGCGGAGCAGCGCCACCGACTGGCGGAAACCGAGT
CGACCCTGGCCGGTAGGCTGTCAAAGTTCCTCGGCGGCTGCGACAGCTTT
TACGACGAACAACCCTTATCCCTTGCAATGCACTTTGCCGCGGGAGCGGC
CTCGGGGGGGAGTGCTGCTGCGGCTGCTGCTGCTGCTACGGTGGCGGCGC
CGGCGGTGGCGCCGGCAGCCCAGTCACCAGCGCAACCAGCAGCATCGGCA
AGAGCACCAGCGGTAGCGCCAACAGCAGTGCCACCAACGGCAACACCAGC
AGCTCCAGTAATTTCCCACTCGGTACCGGCGCCCCAGAGGCGGCAGCACA
TCTGCGCCAAGGAGGCGGAAAGAGCGCATCTAGCAGCCGACAACACCGAC
AACCCAAAACACCCTGGCAGTGGCTGCACAAATGCGTGTACCGAGGGCTC
CGCGGACCGCGAAGCCCCCCTGCCGCCGCTGCCGGCAAGGGGAAAAGCTG
GAGCTAGCTCGATACATCGCGATGCCGGTGCTGAGGAGGCGTCTACACTC
GGAGGCGACCGCTGCCGCAAGCGGCGGCGGCGGCAGCAGCAGCAGCAGCT
CTCCCAGGGCGGAAACCGAGTCGACCCTGGCCGGTAGGCTGTCAAAGTTC
CTCGGCGGCTGCGACAGCTTTTACGACGAACAACCCTTATCCCTTGCAAT
GCACTTTGCCGCGGGAGCGGCCTCGGGGGGGAGTGCTGCTGCGGCTGCTG
CTGCTGCTACGGTGGCGGCGCCGGCGGTGGCGCCGGCAGCCCAGTCACCA
GCGCAACCAGCAGCATCGGCAAGAGCACCAGCGGTAGCGCCAACAGCAGT
GCCACCAACGGCAACACCAGCAGCTCCAGTAATTTCCCACTCGGTACCGG
CGCCCCAGAGGCGGCAGCACATCTGCGCCAAGGAGGCGGAAAGAGCGCAT
CTAGCAGCCGACAACACCGACAACCCAAAACACCCTGGCAGTGGCTGCAC
AAATGCGTGTACCGAGGGCTCCGCGGACCGCGAAGCCCCCCTGCCGCCGC
TGCCGGCAAGGGGAAAAGCTGGAGCTAGCTCGATACATCGCGATGCCGGT
GCTGAGGAGGCGTCTACACTCGGAGGCGACCGCTGCCGCAAGCGGCGGCG
GCGGCAGCAGCAGCAGCAGCTCTCCCAG
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