mRNA_L-elsbetiae_contig759.16498.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig759.16498.1
Unique NamemRNA_L-elsbetiae_contig759.16498.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig759.16498.1 vs. uniprot
Match: A0A6H5J8Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Z5_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.430e-31
Identity = 111/296 (37.50%), Postives = 150/296 (50.68%), Query Frame = 3 
Query:   33 DLLAKLTVLHNYIERELQGVVTAVSHLDFKE--RPTRKLHSILTLAQKRIQTALAQQRMLLWNFSMESNPAAGCVHSAESDKVKPRKGRRNGLEELAVGSRTPQNCGTQTCAAC----RGDKGAKG-------NRELEWKRDTLVRMKYLLQRKAGDHTATEADRTALQKDIAKITLTLGQLQASGEQHQKCTCVTTTAAEEGYSCNKNAGAMDVEHDRTSARSTCRPGEWARAGANTACASGTATPCSRVARGQHGKGVPKKNVCFDQSALK-VELRFPDGLDLLLRRIAEGVRP 878
            DLLA+LTVLH+++EREL+GV  AV+ L F+E  +      + L L++ RI  AL +QR+LLW FS ES PAA    S +SD     +  +N + + AVG         + C AC        G  G       + EL+WKRDTLVRMK+LL+RKAGD  ATEA R A+++D+AK+   L  LQ       +C               +  G +  + D               AG +      +    +  AR Q          C+ +S L+ VELR PDGLD+LL RIAEGVRP
Sbjct:   11 DLLAELTVLHSHVERELEGVAVAVNDL-FEEDHQAAASTSARLQLSKNRILAALTRQRILLWEFSTESEPAAVFARSEDSDGNLGSR-HQNPIHKPAVGLIADN----KQCTACGRPGNPSSGLSGQPPARKLDEELQWKRDTLVRMKHLLRRKAGDLGATEAARGAIRRDMAKVDAALRDLQ-------EC---------------QLGGLLPPQMD---------------AGEDNDSLGASQPQKNEKAREQDNSS--NNGRCYAESVLREVELRLPDGLDVLLGRIAEGVRP 261
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig759.16498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8Z5_9PHAE1.430e-3137.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig759contigL-elsbetiae_contig759:8173..9965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_003250.1
Exons2
Model size1327
Cds size1305
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig759.16498.1prot_L-elsbetiae_contig759.16498.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig759 8173..9945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.0976627-CDS-L-elsbetiae_contig759:8172..86651622816843.0976627-CDS-L-elsbetiae_contig759:8172..8665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig759 8173..8665 -
1691683855.42193-CDS-L-elsbetiae_contig759:8172..86651691683855.42193-CDS-L-elsbetiae_contig759:8172..8665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig759 8173..8665 -
1622816843.1097646-CDS-L-elsbetiae_contig759:9133..99451622816843.1097646-CDS-L-elsbetiae_contig759:9133..9945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig759 9134..9945 -
1691683855.4322517-CDS-L-elsbetiae_contig759:9133..99451691683855.4322517-CDS-L-elsbetiae_contig759:9133..9945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig759 9134..9945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.1198797-UTR-L-elsbetiae_contig759:9945..99651622816843.1198797-UTR-L-elsbetiae_contig759:9945..9965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig759 9946..9965 -
1691683855.4424071-UTR-L-elsbetiae_contig759:9945..99651691683855.4424071-UTR-L-elsbetiae_contig759:9945..9965Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig759 9946..9965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig759.16498.1

>prot_L-elsbetiae_contig759.16498.1 ID=prot_L-elsbetiae_contig759.16498.1|Name=mRNA_L-elsbetiae_contig759.16498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=435bp
MTSEDLLAKLTVLHNYIERELQGVVTAVSHLDFKERPTRKLHSILTLAQK
RIQTALAQQRMLLWNFSMESNPAAGCVHSAESDKVKPRKGRRNGLEELAV
GSRTPQNCGTQTCAACRGDKGAKGNRELEWKRDTLVRMKYLLQRKAGDHT
ATEADRTALQKDIAKITLTLGQLQASGEQHQKCTCVTTTAAEEGYSCNKN
AGAMDVEHDRTSARSTCRPGEWARAGANTACASGTATPCSRVARGQHGKG
VPKKNVCFDQSALKVELRFPDGLDLLLRRIAEGVRPPIHPAAASRLPSSE
LPSTSGSTHRGEQTNEDGEDGNNRGSTSGSLTGAVDPPCAFFGAGKKENG
GGGGGGGGAVQAKAAPAALSNLVGGTNDRRGEGCGGIQRTSRNAASGEYR
AQCIERGMTKFEKRPRLPTVADTAGAEAQGSMQQR
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mRNA from alignment at L-elsbetiae_contig759:8173..9965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig759.16498.1 ID=mRNA_L-elsbetiae_contig759.16498.1|Name=mRNA_L-elsbetiae_contig759.16498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1793bp|location=Sequence derived from alignment at L-elsbetiae_contig759:8173..9965- (Laminarionema elsbetiae ELsaHSoW15)
GCCACACCCCCGCGGGCACCATGACTAGCGAGGATCTTCTTGCCAAGCTG
ACAGTTCTTCACAATTATATAGAGAGGGAGCTTCAGGGGGTTGTCACGGC
GGTGAGCCATCTAGATTTCAAGGAGAGGCCAACTCGCAAACTTCATTCAA
TCTTGACTCTAGCCCAGAAACGGATCCAGACTGCGCTTGCTCAGCAACGG
ATGCTGCTGTGGAATTTCTCAATGGAGAGCAATCCTGCAGCAGGGTGCGT
TCACTCGGCAGAGAGTGACAAAGTGAAGCCACGGAAAGGTCGCAGAAATG
GTCTCGAAGAGCTGGCCGTTGGGTCGCGCACACCCCAGAATTGTGGTACG
CAGACTTGCGCCGCATGCCGAGGGGACAAGGGAGCCAAGGGGAATCGGGA
GCTCGAGTGGAAGCGCGACACACTGGTGAGGATGAAATACCTCTTGCAAC
GCAAAGCCGGAGACCACACCGCGACCGAGGCCGACAGAACGGCGTTACAA
AAAGACATCGCTAAGATAACACTCACTCTGGGACAGCTTCAGGCAAGTGG
CGAGCAACATCAAAAATGCACCTGTGTCACCACGACGGCTGCTGAGGAAG
GATACAGCTGTAACAAAAACGCCGGGGCGATGGACGTCGAACACGACCGT
ACCTCAGCGAGATCGACGTGCCGACCAGGCGAATGGGCCCGAGCAGGCGC
CAATACTGCATGCGCCTCTGGTACGGCCACTCCATGTAGCCGCGTGGCAC
GTGGGCAGCATGGGAAGGGGGTCCCCAAGAAGAACGTCTGTTTTGACCAA
TCGGCCCTGAAGGTCGAGCTTCGATTCCCAGAGTGAGTGTGTGATTTGTT
TCTGGGGGTATAACAGCTCGCCTTGGCTTGGGGGAAAACGGATCCCGCTT
TGTCGGGGCATACGCGAGCGGCATCATGACTGAGACGACGGTATAGATGG
TGCCTTCATATCGTGCGCGCTGCAGGCTTATCTCTCGTCTCTCGTTCGAT
AAGAAAAACATGTGTTTCACTCACCGAGTAATCACGCAGCGGCGAATACG
GCGAGTTTCCTAAGGGGGGAAGGGCATGCCGTAAGCGCTGTTTGTTGTCA
ACTCTTCCAAACCAGGAAATCTCTGCTGCATCAGCTGAGAGCGCAAAAAG
CAACACCTGGGACGTGATCATTTTGATTCACACGTGAGTAGAAAAAGTAG
ACGATGACTTCTTCCACGTTACATTCAAGCCCATGCCCTTCCTCCTCCTT
GTGTTTTATTGTGTACGGCGCGGTATGTCTTAAATATGGCCTCTGAACAG
CGGCCTCGACCTGCTGCTCAGACGCATTGCGGAAGGTGTTCGACCGCCCA
TCCACCCAGCAGCAGCATCAAGATTACCTTCGTCGGAACTTCCTTCAACT
TCTGGGTCGACTCACAGAGGTGAACAAACCAACGAAGACGGCGAGGACGG
CAACAACAGGGGGAGCACCAGCGGATCGCTGACCGGAGCCGTCGACCCTC
CCTGCGCTTTTTTCGGCGCGGGAAAAAAGGAAAACGGAGGAGGAGGAGGA
GGAGGAGGAGGAGCTGTTCAGGCGAAAGCCGCTCCTGCGGCTCTGTCGAA
CCTCGTGGGCGGCACGAATGATCGAAGGGGAGAGGGATGCGGTGGCATTC
AGCGGACTTCACGAAACGCTGCGAGTGGCGAATACAGAGCCCAGTGTATC
GAACGGGGAATGACCAAATTTGAAAAGAGACCACGGTTGCCCACGGTAGC
AGACACTGCGGGCGCAGAAGCGCAAGGGAGCATGCAGCAACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig759:8173..9965-

>mRNA_L-elsbetiae_contig759.16498.1 ID=mRNA_L-elsbetiae_contig759.16498.1|Name=mRNA_L-elsbetiae_contig759.16498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2610bp|location=Sequence derived from alignment at L-elsbetiae_contig759:8173..9965- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTAGCGAGGATCTTCTTGCCAAGCTGACAGTTCTTCACAATTATAT
AGAGAGGGAGCTTCAGGGGGTTGTCACGGCGGTGAGCCATCTAGATTTCA
AGGAGAGGCCAACTCGCAAACTTCATTCAATCTTGACTCTAGCCCAGAAA
CGGATCCAGACTGCGCTTGCTCAGCAACGGATGCTGCTGTGGAATTTCTC
AATGGAGAGCAATCCTGCAGCAGGGTGCGTTCACTCGGCAGAGAGTGACA
AAGTGAAGCCACGGAAAGGTCGCAGAAATGGTCTCGAAGAGCTGGCCGTT
GGGTCGCGCACACCCCAGAATTGTGGTACGCAGACTTGCGCCGCATGCCG
AGGGGACAAGGGAGCCAAGGGGAATCGGGAGCTCGAGTGGAAGCGCGACA
CACTGGTGAGGATGAAATACCTCTTGCAACGCAAAGCCGGAGACCACACC
GCGACCGAGGCCGACAGAACGGCGTTACAAAAAGACATCGCTAAGATAAC
ACTCACTCTGGGACAGCTTCAGGCAAGTGGCGAGCAACATCAAAAATGCA
CCTGTGTCACCACGACGGCTGCTGAGGAAGGATACAGCTGTAACAAAAAC
GCCGGGGCGATGGACGTCGAACACGACCGTACCTCAGCGAGATCGACGTG
CCGACCAGGCGAATGGGCCCGAGCAGGCGCCAATACTGCATGCGCCTCTG
GTACGGCCACTCCATGTAGCCGCGTGGCACGTGGGCAGCATGGGAAGGGG
GTCCCCAAGAAGAACGTCTGTTTTGACCAATCGGCCCTGAAGGTCGAGCT
TCGATTCCCAGAATGACTAGCGAGGATCTTCTTGCCAAGCTGACAGTTCT
TCACAATTATATAGAGAGGGAGCTTCAGGGGGTTGTCACGGCGGTGAGCC
ATCTAGATTTCAAGGAGAGGCCAACTCGCAAACTTCATTCAATCTTGACT
CTAGCCCAGAAACGGATCCAGACTGCGCTTGCTCAGCAACGGATGCTGCT
GTGGAATTTCTCAATGGAGAGCAATCCTGCAGCAGGGTGCGTTCACTCGG
CAGAGAGTGACAAAGTGAAGCCACGGAAAGGTCGCAGAAATGGTCTCGAA
GAGCTGGCCGTTGGGTCGCGCACACCCCAGAATTGTGGTACGCAGACTTG
CGCCGCATGCCGAGGGGACAAGGGAGCCAAGGGGAATCGGGAGCTCGAGT
GGAAGCGCGACACACTGGTGAGGATGAAATACCTCTTGCAACGCAAAGCC
GGAGACCACACCGCGACCGAGGCCGACAGAACGGCGTTACAAAAAGACAT
CGCTAAGATAACACTCACTCTGGGACAGCTTCAGGCAAGTGGCGAGCAAC
ATCAAAAATGCACCTGTGTCACCACGACGGCTGCTGAGGAAGGATACAGC
TGTAACAAAAACGCCGGGGCGATGGACGTCGAACACGACCGTACCTCAGC
GAGATCGACGTGCCGACCAGGCGAATGGGCCCGAGCAGGCGCCAATACTG
CATGCGCCTCTGGTACGGCCACTCCATGTAGCCGCGTGGCACGTGGGCAG
CATGGGAAGGGGGTCCCCAAGAAGAACGTCTGTTTTGACCAATCGGCCCT
GAAGGTCGAGCTTCGATTCCCAGACGGCCTCGACCTGCTGCTCAGACGCA
TTGCGGAAGGTGTTCGACCGCCCATCCACCCAGCAGCAGCATCAAGATTA
CCTTCGTCGGAACTTCCTTCAACTTCTGGGTCGACTCACAGAGGTGAACA
AACCAACGAAGACGGCGAGGACGGCAACAACAGGGGGAGCACCAGCGGAT
CGCTGACCGGAGCCGTCGACCCTCCCTGCGCTTTTTTCGGCGCGGGAAAA
AAGGAAAACGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTGTTCAGGCGAA
AGCCGCTCCTGCGGCTCTGTCGAACCTCGTGGGCGGCACGAATGATCGAA
GGGGAGAGGGATGCGGTGGCATTCAGCGGACTTCACGAAACGCTGCGAGT
GGCGAATACAGAGCCCAGTGTATCGAACGGGGAATGACCAAATTTGAAAA
GAGACCACGGTTGCCCACGGTAGCAGACACTGCGGGCGCAGAAGCGCAAG
GGAGCATGCAGCAACGGCGGCCTCGACCTGCTGCTCAGACGCATTGCGGA
AGGTGTTCGACCGCCCATCCACCCAGCAGCAGCATCAAGATTACCTTCGT
CGGAACTTCCTTCAACTTCTGGGTCGACTCACAGAGGTGAACAAACCAAC
GAAGACGGCGAGGACGGCAACAACAGGGGGAGCACCAGCGGATCGCTGAC
CGGAGCCGTCGACCCTCCCTGCGCTTTTTTCGGCGCGGGAAAAAAGGAAA
ACGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTGTTCAGGCGAAAGCCGCT
CCTGCGGCTCTGTCGAACCTCGTGGGCGGCACGAATGATCGAAGGGGAGA
GGGATGCGGTGGCATTCAGCGGACTTCACGAAACGCTGCGAGTGGCGAAT
ACAGAGCCCAGTGTATCGAACGGGGAATGACCAAATTTGAAAAGAGACCA
CGGTTGCCCACGGTAGCAGACACTGCGGGCGCAGAAGCGCAAGGGAGCAT
GCAGCAACGG
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