mRNA_L-elsbetiae_contig7587.16494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7587.16494.1
Unique NamemRNA_L-elsbetiae_contig7587.16494.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7587.16494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7587contigL-elsbetiae_contig7587:5022..6479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size803
Cds size801
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.6984088-CDS-L-elsbetiae_contig7587:5023..56141622816842.6984088-CDS-L-elsbetiae_contig7587:5023..5614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 5024..5614 -
1691683855.1387694-CDS-L-elsbetiae_contig7587:5023..56141691683855.1387694-CDS-L-elsbetiae_contig7587:5023..5614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 5024..5614 -
1622816842.7098475-CDS-L-elsbetiae_contig7587:6269..64791622816842.7098475-CDS-L-elsbetiae_contig7587:6269..6479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 6270..6479 -
1691683855.1485116-CDS-L-elsbetiae_contig7587:6269..64791691683855.1485116-CDS-L-elsbetiae_contig7587:6269..6479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 6270..6479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7587.16494.1prot_L-elsbetiae_contig7587.16494.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7587 5024..6479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7587.16494.1

>prot_L-elsbetiae_contig7587.16494.1 ID=prot_L-elsbetiae_contig7587.16494.1|Name=mRNA_L-elsbetiae_contig7587.16494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
KNAAKELAVEPPPKERKAGSGGNGGGGGKKNAPGGGVKGPNGKDKAGGNG
DGDADSRSPVKPSQQHLGKKTHHRSDSPNKASSSASTESNSEDEYDPSSP
QTQAAGTTTKYGAAAATTPATSIAAAIIHATAISVASSPAPPAAAAAAAA
AAKKSRATRATPPKKSSVRRPPVVVTPTAPDGSGTASSRRAPSHPEDERG
QRRAGKKQGRRDQQQQQQQPASGQQHAKSLFSALSASSSSSSSASSSSSS
TIAAITGKGAAAAAAAA
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mRNA from alignment at L-elsbetiae_contig7587:5022..6479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7587.16494.1 ID=mRNA_L-elsbetiae_contig7587.16494.1|Name=mRNA_L-elsbetiae_contig7587.16494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig7587:5022..6479- (Laminarionema elsbetiae ELsaHSoW15)
AAGAATGCGGCGAAGGAGCTAGCGGTAGAGCCTCCGCCAAAGGAAAGGAA
GGCAGGCAGCGGCGGCAACGGGGGAGGGGGGGGCAAGAAGAACGCTCCCG
GGGGCGGTGTCAAGGGACCGAACGGCAAGGACAAGGCCGGCGGCAACGGT
GACGGTGATGCGGACAGCAGGAGTCCCGTCAAGCCATCACAGCAGCACCT
CGGGAAGAAGGTGTGTGTGTGTGTGTGTGTGCAGTTTTCTTCAGCAAAGA
GGCATCCGTAGAGAGATGATGCAGGACCAGCGGGATTCTTGTCTGCTACA
ATAGCTCTTCCGGCCTGCCATGCTTGCCGGTGCTGTACATATACCTAACT
ACCTCCAGTTGCACCTTCTATTAACCGACCGTCCTTTCGAATTTACGCTG
ACAGCGGCTTTAGTGAACTTATCCCCGGCTGAAGCGTAGGTCAGGTCGCG
TGTTCTGCTGCTCGTTCGTTCCTCAACTTGGGACCGCGTGTGCTCCTGTC
CACGATCCCACGACGGCAGTAGTAAGAAGCCTCCCCCATCTCTCCTCTGC
CTGCCGGGATTCTCGTCCCTTCTCGGCCCCTCCTCCCCCCCCCCCCCCTT
CTCCGCACCCCCGTTATTTTTGTTCGGTCGCTCTCTCGTACGCCCACGCT
TTTATATACATATATATGCATGACACTGTACATATATATAACGCCTGTGC
GCATGGCATGCGTACATAGATACGTGTGTTTTTTTTTCTCATTTGTACGT
GTATTTGTCTTCCCCCAGACACACCACCGGTCATATAACGCCTGTGCGCA
TGGCATGCGTACATAAATACGTGTGTTTTTTTTTCTCGTTTGTACGTGTA
TTTGTTTACCCCCAGACACACCACCGGTCCGACTCGCCGAACAAGGCAAG
CAGCAGCGCATCGACGGAGAGCAACAGCGAGGACGAGTACGACCCTTCTT
CTCCTCAGACTCAAGCCGCGGGTACCACCACCAAGTACGGCGCCGCTGCG
GCGACGACGCCCGCAACCTCCATCGCCGCCGCGATCATCCACGCTACCGC
TATCTCTGTGGCGTCGTCGCCCGCTCCCCCCGCTGCCGCCGCCGCCGCCG
CCGCCGCCGCGAAAAAAAGCCGTGCGACGCGCGCAACGCCACCGAAGAAG
TCGTCGGTGCGCCGGCCTCCGGTGGTGGTGACACCGACCGCCCCCGACGG
CAGCGGCACCGCTAGCAGCCGGCGAGCGCCGTCCCATCCGGAAGACGAGC
GAGGGCAGCGGCGAGCGGGGAAGAAGCAGGGGAGGAGAGACCAGCAGCAG
CAGCAGCAGCAGCCGGCGTCTGGGCAGCAGCACGCAAAGTCTCTGTTTTC
AGCCCTGTCCGCGTCGTCGTCATCGTCTTCTTCTGCCTCTTCTTCTTCCT
CGTCCACTATCGCCGCTATCACGGGAAAGGGTGCGGCAGCGGCCGCGGCG
GCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7587:5022..6479-

>mRNA_L-elsbetiae_contig7587.16494.1 ID=mRNA_L-elsbetiae_contig7587.16494.1|Name=mRNA_L-elsbetiae_contig7587.16494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig7587:5022..6479- (Laminarionema elsbetiae ELsaHSoW15)
AAGAATGCGGCGAAGGAGCTAGCGGTAGAGCCTCCGCCAAAGGAAAGGAA
GGCAGGCAGCGGCGGCAACGGGGGAGGGGGGGGCAAGAAGAACGCTCCCG
GGGGCGGTGTCAAGGGACCGAACGGCAAGGACAAGGCCGGCGGCAACGGT
GACGGTGATGCGGACAGCAGGAGTCCCGTCAAGCCATCACAGCAGCACCT
CGGGAAGAAGAAGAATGCGGCGAAGGAGCTAGCGGTAGAGCCTCCGCCAA
AGGAAAGGAAGGCAGGCAGCGGCGGCAACGGGGGAGGGGGGGGCAAGAAG
AACGCTCCCGGGGGCGGTGTCAAGGGACCGAACGGCAAGGACAAGGCCGG
CGGCAACGGTGACGGTGATGCGGACAGCAGGAGTCCCGTCAAGCCATCAC
AGCAGCACCTCGGGAAGAAGACACACCACCGGTCCGACTCGCCGAACAAG
GCAAGCAGCAGCGCATCGACGGAGAGCAACAGCGAGGACGAGTACGACCC
TTCTTCTCCTCAGACTCAAGCCGCGGGTACCACCACCAAGTACGGCGCCG
CTGCGGCGACGACGCCCGCAACCTCCATCGCCGCCGCGATCATCCACGCT
ACCGCTATCTCTGTGGCGTCGTCGCCCGCTCCCCCCGCTGCCGCCGCCGC
CGCCGCCGCCGCCGCGAAAAAAAGCCGTGCGACGCGCGCAACGCCACCGA
AGAAGTCGTCGGTGCGCCGGCCTCCGGTGGTGGTGACACCGACCGCCCCC
GACGGCAGCGGCACCGCTAGCAGCCGGCGAGCGCCGTCCCATCCGGAAGA
CGAGCGAGGGCAGCGGCGAGCGGGGAAGAAGCAGGGGAGGAGAGACCAGC
AGCAGCAGCAGCAGCAGCCGGCGTCTGGGCAGCAGCACGCAAAGTCTCTG
TTTTCAGCCCTGTCCGCGTCGTCGTCATCGTCTTCTTCTGCCTCTTCTTC
TTCCTCGTCCACTATCGCCGCTATCACGGGAAAGGGTGCGGCAGCGGCCG
CGGCGGCAGCAACACACCACCGGTCCGACTCGCCGAACAAGGCAAGCAGC
AGCGCATCGACGGAGAGCAACAGCGAGGACGAGTACGACCCTTCTTCTCC
TCAGACTCAAGCCGCGGGTACCACCACCAAGTACGGCGCCGCTGCGGCGA
CGACGCCCGCAACCTCCATCGCCGCCGCGATCATCCACGCTACCGCTATC
TCTGTGGCGTCGTCGCCCGCTCCCCCCGCTGCCGCCGCCGCCGCCGCCGC
CGCCGCGAAAAAAAGCCGTGCGACGCGCGCAACGCCACCGAAGAAGTCGT
CGGTGCGCCGGCCTCCGGTGGTGGTGACACCGACCGCCCCCGACGGCAGC
GGCACCGCTAGCAGCCGGCGAGCGCCGTCCCATCCGGAAGACGAGCGAGG
GCAGCGGCGAGCGGGGAAGAAGCAGGGGAGGAGAGACCAGCAGCAGCAGC
AGCAGCAGCCGGCGTCTGGGCAGCAGCACGCAAAGTCTCTGTTTTCAGCC
CTGTCCGCGTCGTCGTCATCGTCTTCTTCTGCCTCTTCTTCTTCCTCGTC
CACTATCGCCGCTATCACGGGAAAGGGTGCGGCAGCGGCCGCGGCGGCAG
CA
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