mRNA_L-elsbetiae_contig7587.16493.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7587.16493.1
Unique NamemRNA_L-elsbetiae_contig7587.16493.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7587.16493.1 vs. uniprot
Match: A0A6H5JQ71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ71_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.190e-23
Identity = 146/336 (43.45%), Postives = 161/336 (47.92%), Query Frame = -2 
Query:    3 WASESSPANVAVRAVTPVRPSA-AVVXXXXXXXXXXXXRVSPP-PFAVPAVPLSAGG-GTAWGGAATLKPAAAAA---------------------PFANGLRPATNATNIPHVAPQRPGPAAPGPAAVAAPGPGLGSVWGTSSAAIVDARAKPFLVA-AAGAGXXXXXPAMSPPGVPFAGV-ATSRAPGPANRAGVIGPRPAAAAV------AAKPAGPTGPLFPGTIAKALPPASVTTATAGGSRAATMTAVS--GGVKSKVGGLGVVGGGRLPXXXXXXXXXXXXXXXXXXXXXXXXXSGLGLVRTVSGGSEALVENEKLVSFLLETGSILAL 908
            WASESSPANVAV A TPVR SA A  X           RVS P P  V  VP   GG G AWGGA  +KPA   A                     P ANGL+           APQR GP   GPA          SVWG S + I+DAR  P  VA +A   XXXXX   S  G PFAG+ A +RAPGP+NRAGVIG RP AAA        AK  GP+    P   A AL PAS   AT G     T+ +V+  GG  S  GG+   G                              S   L R+ S GSEAL+ENEKLVSFLLETGSILAL
Sbjct: 1058 WASESSPANVAVSAATPVRSSAVASPXPAAVSATGTAPRVSAPSPSLVQVVPPGGGGPGGAWGGAGVVKPAVPPAVSSGPVGTPSSTTAAKGVLRHPVANGLQ----------FAPQRQGP---GPA----------SVWGASPS-IMDARHNPLSVAPSAXXXXXXXXXXGSSLGAPFAGLPAAARAPGPSNRAGVIGSRPQAAAAXXXXXXVAKSVGPSSRGVP--TANALSPAS---ATVGNRVTTTVASVNSKGGTVSSSGGVSPAG--------VVIPRQEAPIGSGSSSSANSSSSVSSLFRSASTGSEALIENEKLVSFLLETGSILAL 1356
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BLAST of mRNA_L-elsbetiae_contig7587.16493.1 vs. uniprot
Match: D8LKX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX1_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 9.990e-23
Identity = 139/292 (47.60%), Postives = 153/292 (52.40%), Query Frame = -2 
Query:    3 RVS-PPPFAVPAVPLSAGG-GTAWGGAATLKPAAAAAPFANGLRPATNAT----------NIPHVAPQRPGPAAPGPAAVAAPGPGLGSVWGTSSAAIVDARAKPFLVA--AAGAGXXXXXPAMSPPGVPFAGV-ATSRAPGPANRAGVIGPRP-------AAAAVAAKPAGPTGPLFPGTIAKALPPASVTTATAGGSRAATMTAVSGGVKSKVGGLGVVG-----GGRLPXXXXXXXXXXXXXXXXXXXXXXXXXSGLGLVRTVSGGSEALVENEKLVSFLLETGSILAL 797
            RVS P P  V  VP   GG G AWGGA  +KPA   A  +  +   ++ T          N    APQR GP             G GSVWG SS+ I+DAR  P  VA  A+ A  XXXX A S  G PFAG+ A +RAPGP+NRAGVIG RP       AAAAV AKP GP+    P   A AL P S T     GSR  T TA S  V SK GG GV G     GG  P                   XXXXXXS   L R+ S GSEAL+ENEKLVSFLLETGSILAL
Sbjct: 1172 RVSVPSPSHVQVVPPGGGGPGGAWGGAGVVKPAVPPAVSSRPVGTPSSTTAKGVLRQPVANGSQFAPQRQGP-------------GPGSVWGASSS-IMDARHNPLSVAPPASSASSXXXXXAGSSLGAPFAGLPAAARAPGPSNRAGVIGSRPQATATTVAAAAVVAKPVGPSSRGLP--TANALSPTSTTV----GSRVTT-TAAS--VNSK-GGTGVAGTVSSSGGVSPAGVAIPWQEAPVGGGSGSSXXXXXXSVSSLFRSASTGSEALIENEKLVSFLLETGSILAL 1439
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7587.16493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ71_9PHAE1.190e-2343.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKX1_ECTSI9.990e-2347.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7587contigL-elsbetiae_contig7587:3909..4860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size953
Cds size951
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.741945-CDS-L-elsbetiae_contig7587:3908..48591622816842.741945-CDS-L-elsbetiae_contig7587:3908..4859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 3909..4859 +
1691683855.159498-CDS-L-elsbetiae_contig7587:3908..48591691683855.159498-CDS-L-elsbetiae_contig7587:3908..4859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 3909..4859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7587.16493.1prot_L-elsbetiae_contig7587.16493.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7587 3909..4859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7587.16493.1

>prot_L-elsbetiae_contig7587.16493.1 ID=prot_L-elsbetiae_contig7587.16493.1|Name=mRNA_L-elsbetiae_contig7587.16493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=317bp
ASAKIEPVSSKKLTSFSFSTSASDPPETVRTRPRPLPPPPPLFAPPLIAV
LFCMGGAAPAGGSRPPPTTPRPPTLLLTPPDTAVIVAALLPPAVAVVTDA
GGSAFAMVPGNSGPVGPAGFAATAAAAGRGPITPARFAGPGAREVATPAK
GTPGGDIAGGGAAAPAPAAATKNGFALASTMAAEEVPQTEPSPGPGAATA
AGPGAAGPGRCGATCGMFVALVAGRRPFANGAAAAAGLRVAAPPQAVPPP
ALRGTAGTANGGGETRGTTTAAAAGDGDTTAALGLTGVTARTATLAGLDS
LAHTTEEAPPPPPPPPP
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mRNA from alignment at L-elsbetiae_contig7587:3909..4860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7587.16493.1 ID=mRNA_L-elsbetiae_contig7587.16493.1|Name=mRNA_L-elsbetiae_contig7587.16493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=952bp|location=Sequence derived from alignment at L-elsbetiae_contig7587:3909..4860+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGCGCCAAGATCGAGCCCGTCTCGAGCAAGAAGCTGACGAGCTTCTC
GTTCTCAACCAGCGCCTCGGACCCGCCCGAGACTGTCCGGACCAGGCCCA
GGCCGCTACCACCACCACCGCCGCTGTTTGCGCCGCCGCTGATAGCGGTC
CTCTTCTGCATGGGGGGCGCGGCACCGGCGGGGGGCAGCCGACCGCCACC
CACTACGCCGAGGCCCCCCACCTTGCTCTTGACGCCGCCGGACACCGCCG
TCATCGTCGCGGCCCTGCTGCCCCCCGCCGTCGCAGTTGTCACAGACGCG
GGTGGTAGCGCTTTCGCGATGGTGCCGGGAAACAGCGGGCCCGTCGGTCC
AGCAGGCTTCGCCGCCACCGCCGCCGCCGCCGGCCGTGGGCCGATCACGC
CCGCTCGGTTCGCTGGGCCGGGAGCCCGGGAGGTAGCCACTCCCGCGAAA
GGAACGCCGGGCGGAGACATCGCCGGCGGGGGCGCCGCGGCACCGGCGCC
CGCCGCAGCAACCAAGAATGGCTTCGCTCTCGCGTCCACGATGGCCGCCG
AAGAGGTGCCCCAAACAGAGCCGAGCCCCGGCCCCGGCGCTGCCACTGCC
GCTGGCCCCGGCGCCGCCGGCCCTGGTCGCTGCGGAGCAACGTGCGGGAT
GTTCGTTGCGTTGGTCGCTGGCCGGAGGCCATTCGCGAACGGTGCCGCCG
CCGCTGCGGGCTTGAGGGTAGCAGCACCTCCCCAAGCAGTCCCACCGCCA
GCGCTTAGAGGGACCGCCGGCACAGCAAACGGCGGAGGGGAGACGCGCGG
CACCACCACCGCGGCGGCGGCTGGTGACGGCGACACCACTGCCGCGCTTG
GCCTGACAGGCGTCACGGCTCGAACAGCGACGTTGGCAGGGCTCGATTCG
CTCGCCCACACGACGGAAGAAGCCCCCCCCCCACCGCCGCCGCCGCCTCC
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7587:3909..4860+

>mRNA_L-elsbetiae_contig7587.16493.1 ID=mRNA_L-elsbetiae_contig7587.16493.1|Name=mRNA_L-elsbetiae_contig7587.16493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1902bp|location=Sequence derived from alignment at L-elsbetiae_contig7587:3909..4860+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGCGCCAAGATCGAGCCCGTCTCGAGCAAGAAGCTGACGAGCTTCTC
GTTCTCAACCAGCGCCTCGGACCCGCCCGAGACTGTCCGGACCAGGCCCA
GGCCGCTACCACCACCACCGCCGCTGTTTGCGCCGCCGCTGATAGCGGTC
CTCTTCTGCATGGGGGGCGCGGCACCGGCGGGGGGCAGCCGACCGCCACC
CACTACGCCGAGGCCCCCCACCTTGCTCTTGACGCCGCCGGACACCGCCG
TCATCGTCGCGGCCCTGCTGCCCCCCGCCGTCGCAGTTGTCACAGACGCG
GGTGGTAGCGCTTTCGCGATGGTGCCGGGAAACAGCGGGCCCGTCGGTCC
AGCAGGCTTCGCCGCCACCGCCGCCGCCGCCGGCCGTGGGCCGATCACGC
CCGCTCGGTTCGCTGGGCCGGGAGCCCGGGAGGTAGCCACTCCCGCGAAA
GGAACGCCGGGCGGAGACATCGCCGGCGGGGGCGCCGCGGCACCGGCGCC
CGCCGCAGCAACCAAGAATGGCTTCGCTCTCGCGTCCACGATGGCCGCCG
AAGAGGTGCCCCAAACAGAGCCGAGCCCCGGCCCCGGCGCTGCCACTGCC
GCTGGCCCCGGCGCCGCCGGCCCTGGTCGCTGCGGAGCAACGTGCGGGAT
GTTCGTTGCGTTGGTCGCTGGCCGGAGGCCATTCGCGAACGGTGCCGCCG
CCGCTGCGGGCTTGAGGGTAGCAGCACCTCCCCAAGCAGTCCCACCGCCA
GCGCTTAGAGGGACCGCCGGCACAGCAAACGGCGGAGGGGAGACGCGCGG
CACCACCACCGCGGCGGCGGCTGGTGACGGCGACACCACTGCCGCGCTTG
GCCTGACAGGCGTCACGGCTCGAACAGCGACGTTGGCAGGGCTCGATTCG
CTCGCCCACACGACGGAAGAAGCCCCCCCCCCACCGCCGCCGCCGCCTCC
CGCCAGCGCCAAGATCGAGCCCGTCTCGAGCAAGAAGCTGACGAGCTTCT
CGTTCTCAACCAGCGCCTCGGACCCGCCCGAGACTGTCCGGACCAGGCCC
AGGCCGCTACCACCACCACCGCCGCTGTTTGCGCCGCCGCTGATAGCGGT
CCTCTTCTGCATGGGGGGCGCGGCACCGGCGGGGGGCAGCCGACCGCCAC
CCACTACGCCGAGGCCCCCCACCTTGCTCTTGACGCCGCCGGACACCGCC
GTCATCGTCGCGGCCCTGCTGCCCCCCGCCGTCGCAGTTGTCACAGACGC
GGGTGGTAGCGCTTTCGCGATGGTGCCGGGAAACAGCGGGCCCGTCGGTC
CAGCAGGCTTCGCCGCCACCGCCGCCGCCGCCGGCCGTGGGCCGATCACG
CCCGCTCGGTTCGCTGGGCCGGGAGCCCGGGAGGTAGCCACTCCCGCGAA
AGGAACGCCGGGCGGAGACATCGCCGGCGGGGGCGCCGCGGCACCGGCGC
CCGCCGCAGCAACCAAGAATGGCTTCGCTCTCGCGTCCACGATGGCCGCC
GAAGAGGTGCCCCAAACAGAGCCGAGCCCCGGCCCCGGCGCTGCCACTGC
CGCTGGCCCCGGCGCCGCCGGCCCTGGTCGCTGCGGAGCAACGTGCGGGA
TGTTCGTTGCGTTGGTCGCTGGCCGGAGGCCATTCGCGAACGGTGCCGCC
GCCGCTGCGGGCTTGAGGGTAGCAGCACCTCCCCAAGCAGTCCCACCGCC
AGCGCTTAGAGGGACCGCCGGCACAGCAAACGGCGGAGGGGAGACGCGCG
GCACCACCACCGCGGCGGCGGCTGGTGACGGCGACACCACTGCCGCGCTT
GGCCTGACAGGCGTCACGGCTCGAACAGCGACGTTGGCAGGGCTCGATTC
GCTCGCCCACACGACGGAAGAAGCCCCCCCCCCACCGCCGCCGCCGCCTC
CC
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