mRNA_L-elsbetiae_contig7583.16490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7583.16490.1
Unique NamemRNA_L-elsbetiae_contig7583.16490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7583.16490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7583contigL-elsbetiae_contig7583:1590..2165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7583.16490.1prot_L-elsbetiae_contig7583.16490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7583 1649..1969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.5797002-UTR-L-elsbetiae_contig7583:1589..16481622816842.5797002-UTR-L-elsbetiae_contig7583:1589..1648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 1590..1648 +
1691683855.0651386-UTR-L-elsbetiae_contig7583:1589..16481691683855.0651386-UTR-L-elsbetiae_contig7583:1589..1648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 1590..1648 +
1622816842.5998702-UTR-L-elsbetiae_contig7583:1969..21651622816842.5998702-UTR-L-elsbetiae_contig7583:1969..2165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 1970..2165 +
1691683855.0852525-UTR-L-elsbetiae_contig7583:1969..21651691683855.0852525-UTR-L-elsbetiae_contig7583:1969..2165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 1970..2165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.5899715-CDS-L-elsbetiae_contig7583:1648..19691622816842.5899715-CDS-L-elsbetiae_contig7583:1648..1969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7583 1649..1969 +
1691683855.0756428-CDS-L-elsbetiae_contig7583:1648..19691691683855.0756428-CDS-L-elsbetiae_contig7583:1648..1969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7583 1649..1969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7583.16490.1

>prot_L-elsbetiae_contig7583.16490.1 ID=prot_L-elsbetiae_contig7583.16490.1|Name=mRNA_L-elsbetiae_contig7583.16490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MNQRGNLPHTRARTRYGVQTVFHTAVTVILGEASRKTNLKYQKSSTSPVQ
RFARGRPTSIQAGRCILRTGAACVQNTKNKYGKTREKGLVSMLTQKNREK
ATPHES*
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mRNA from alignment at L-elsbetiae_contig7583:1590..2165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7583.16490.1 ID=mRNA_L-elsbetiae_contig7583.16490.1|Name=mRNA_L-elsbetiae_contig7583.16490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig7583:1590..2165+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCTCCAGGATGTTAGAGCCTTTTCGTTTTTCGTTTTTTTTTTCAAA
AAATCAACAATGAATCAAAGAGGGAACCTACCCCACACTAGAGCAAGGAC
CCGATATGGGGTTCAAACGGTATTCCATACAGCAGTGACGGTAATACTTG
GCGAAGCGAGCAGAAAAACAAACCTAAAATATCAGAAGAGTTCAACATCT
CCCGTGCAAAGATTTGCCAGAGGTCGGCCAACAAGTATTCAGGCGGGTAG
ATGCATTTTGCGAACGGGGGCGGCGTGTGTGCAAAACACAAAGAATAAAT
ATGGCAAAACCAGAGAAAAGGGGCTGGTAAGTATGTTGACACAGAAAAAC
AGGGAAAAAGCCACCCCGCACGAGAGTTAAGCTGCCACGTCTTTGGCAAA
ATGTCTGCTGCTCTCTGGGAATCTATCTGTCTTCCTGCGATGCGCACAGG
AGCGAGACTGCATTTCGTAATTTCGCTGGTCGTGGTGCGTTGTGTGTGTT
GTCTTCAATATCGTGGTGTTGAAGAGCAACCCGCACACACACACACACAC
ACACTTGGTTACACTCTCGAGAATGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7583:1590..2165+

>mRNA_L-elsbetiae_contig7583.16490.1 ID=mRNA_L-elsbetiae_contig7583.16490.1|Name=mRNA_L-elsbetiae_contig7583.16490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7583:1590..2165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCAAAGAGGGAACCTACCCCACACTAGAGCAAGGACCCGATATGG
GGTTCAAACGGTATTCCATACAGCAGTGACGGTAATACTTGGCGAAGCGA
GCAGAAAAACAAACCTAAAATATCAGAAGAGTTCAACATCTCCCGTGCAA
AGATTTGCCAGAGGTCGGCCAACAAGTATTCAGGCGGGTAGATGCATTTT
GCGAACGGGGGCGGCGTGTGTGCAAAACACAAAGAATAAATATGGCAAAA
CCAGAGAAAAGGGGCTGGTAAGTATGTTGACACAGAAAAACAGGGAAAAA
GCCACCCCGCACGAGAGTTAAATGAATCAAAGAGGGAACCTACCCCACAC
TAGAGCAAGGACCCGATATGGGGTTCAAACGGTATTCCATACAGCAGTGA
CGGTAATACTTGGCGAAGCGAGCAGAAAAACAAACCTAAAATATCAGAAG
AGTTCAACATCTCCCGTGCAAAGATTTGCCAGAGGTCGGCCAACAAGTAT
TCAGGCGGGTAGATGCATTTTGCGAACGGGGGCGGCGTGTGTGCAAAACA
CAAAGAATAAATATGGCAAAACCAGAGAAAAGGGGCTGGTAAGTATGTTG
ACACAGAAAAACAGGGAAAAAGCCACCCCGCACGAGAGTTAA
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