mRNA_L-elsbetiae_contig7583.16489.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7583.16489.1
Unique NamemRNA_L-elsbetiae_contig7583.16489.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7583.16489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7583contigL-elsbetiae_contig7583:762..1272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7583.16489.1prot_L-elsbetiae_contig7583.16489.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7583 876..1232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.5288048-UTR-L-elsbetiae_contig7583:761..8751622816842.5288048-UTR-L-elsbetiae_contig7583:761..875Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 762..875 +
1691683855.0297065-UTR-L-elsbetiae_contig7583:761..8751691683855.0297065-UTR-L-elsbetiae_contig7583:761..875Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 762..875 +
1622816842.550644-UTR-L-elsbetiae_contig7583:1232..12721622816842.550644-UTR-L-elsbetiae_contig7583:1232..1272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 1233..1272 +
1691683855.0547118-UTR-L-elsbetiae_contig7583:1232..12721691683855.0547118-UTR-L-elsbetiae_contig7583:1232..1272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7583 1233..1272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.5402448-CDS-L-elsbetiae_contig7583:875..12321622816842.5402448-CDS-L-elsbetiae_contig7583:875..1232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7583 876..1232 +
1691683855.0429835-CDS-L-elsbetiae_contig7583:875..12321691683855.0429835-CDS-L-elsbetiae_contig7583:875..1232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7583 876..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7583.16489.1

>prot_L-elsbetiae_contig7583.16489.1 ID=prot_L-elsbetiae_contig7583.16489.1|Name=mRNA_L-elsbetiae_contig7583.16489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MGSAHWRLRAKMPLHEIDKKSAVLRSNKGESWAADCPSISHFASLPSLAN
IKKNVCLPPGKHLHVTSLNLASQPASNHTCQTLSPPQRPLPSAAVCLRCL
SSSRESINTPPTKGKTVY*
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mRNA from alignment at L-elsbetiae_contig7583:762..1272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7583.16489.1 ID=mRNA_L-elsbetiae_contig7583.16489.1|Name=mRNA_L-elsbetiae_contig7583.16489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=511bp|location=Sequence derived from alignment at L-elsbetiae_contig7583:762..1272+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTGAAAACATCAATGGACAAGAAGAGGGTACATAAAACCAAGTGAGAA
CGAAGGGGGGGGGGGCAACGAAACAAAGTTAAGTATTTAGGCCAAGTCAT
AAACTGTACCATACATGGGATCGGCACATTGGAGGTTGAGGGCGAAGATG
CCTTTACACGAAATCGACAAAAAATCGGCCGTCTTGCGGAGCAACAAAGG
TGAATCGTGGGCTGCAGACTGCCCCAGCATCTCCCATTTTGCCAGCCTGC
CATCGCTCGCAAATATTAAAAAAAACGTTTGTTTGCCCCCCGGCAAACAT
CTTCATGTGACTTCGCTGAATCTAGCGTCTCAGCCGGCATCAAACCACAC
CTGCCAAACGCTTTCCCCCCCGCAACGGCCGCTGCCGAGTGCGGCGGTCT
GTCTTCGCTGTCTGTCTTCCTCTCGAGAGAGTATAAATACGCCTCCAACG
AAGGGAAAAACTGTGTATTAGCTTATCAACAAACCCTGTCCCCGACTGTA
GAACTTTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7583:762..1272+

>mRNA_L-elsbetiae_contig7583.16489.1 ID=mRNA_L-elsbetiae_contig7583.16489.1|Name=mRNA_L-elsbetiae_contig7583.16489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig7583:762..1272+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCGGCACATTGGAGGTTGAGGGCGAAGATGCCTTTACACGAAAT
CGACAAAAAATCGGCCGTCTTGCGGAGCAACAAAGGTGAATCGTGGGCTG
CAGACTGCCCCAGCATCTCCCATTTTGCCAGCCTGCCATCGCTCGCAAAT
ATTAAAAAAAACGTTTGTTTGCCCCCCGGCAAACATCTTCATGTGACTTC
GCTGAATCTAGCGTCTCAGCCGGCATCAAACCACACCTGCCAAACGCTTT
CCCCCCCGCAACGGCCGCTGCCGAGTGCGGCGGTCTGTCTTCGCTGTCTG
TCTTCCTCTCGAGAGAGTATAAATACGCCTCCAACGAAGGGAAAAACTGT
GTATTAGATGGGATCGGCACATTGGAGGTTGAGGGCGAAGATGCCTTTAC
ACGAAATCGACAAAAAATCGGCCGTCTTGCGGAGCAACAAAGGTGAATCG
TGGGCTGCAGACTGCCCCAGCATCTCCCATTTTGCCAGCCTGCCATCGCT
CGCAAATATTAAAAAAAACGTTTGTTTGCCCCCCGGCAAACATCTTCATG
TGACTTCGCTGAATCTAGCGTCTCAGCCGGCATCAAACCACACCTGCCAA
ACGCTTTCCCCCCCGCAACGGCCGCTGCCGAGTGCGGCGGTCTGTCTTCG
CTGTCTGTCTTCCTCTCGAGAGAGTATAAATACGCCTCCAACGAAGGGAA
AAACTGTGTATTAG
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