mRNA_L-elsbetiae_contig7582.16488.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7582.16488.1
Unique NamemRNA_L-elsbetiae_contig7582.16488.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7582.16488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7582contigL-elsbetiae_contig7582:417..840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size424
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7582.16488.1prot_L-elsbetiae_contig7582.16488.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7582 476..796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.4719849-UTR-L-elsbetiae_contig7582:416..4751622816842.4719849-UTR-L-elsbetiae_contig7582:416..475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7582 417..475 +
1691683854.9946885-UTR-L-elsbetiae_contig7582:416..4751691683854.9946885-UTR-L-elsbetiae_contig7582:416..475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7582 417..475 +
1622816842.4963968-UTR-L-elsbetiae_contig7582:796..8401622816842.4963968-UTR-L-elsbetiae_contig7582:796..840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7582 797..840 +
1691683855.018359-UTR-L-elsbetiae_contig7582:796..8401691683855.018359-UTR-L-elsbetiae_contig7582:796..840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7582 797..840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.4833045-CDS-L-elsbetiae_contig7582:475..7961622816842.4833045-CDS-L-elsbetiae_contig7582:475..796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7582 476..796 +
1691683855.007441-CDS-L-elsbetiae_contig7582:475..7961691683855.007441-CDS-L-elsbetiae_contig7582:475..796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7582 476..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7582.16488.1

>prot_L-elsbetiae_contig7582.16488.1 ID=prot_L-elsbetiae_contig7582.16488.1|Name=mRNA_L-elsbetiae_contig7582.16488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MPAARGTSRAGSGTVSNRRARPARGCRRPPPPPASPHPTGWRRQQPHQPS
ARRPSPLPQALLPLRRDDRLSSGGAAGLMPAHGGRWRRRQRTEARIARRI
PRGIRG*
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mRNA from alignment at L-elsbetiae_contig7582:417..840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7582.16488.1 ID=mRNA_L-elsbetiae_contig7582.16488.1|Name=mRNA_L-elsbetiae_contig7582.16488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=424bp|location=Sequence derived from alignment at L-elsbetiae_contig7582:417..840+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTATCAGAGTCCGCAAAAAGCAGGAATCATGTCAATCGTGCGTCAGGC
GTCAGGGCCATGCCGGCGGCACGAGGCACAAGCCGTGCGGGCAGCGGGAC
TGTCAGCAACCGCCGTGCCCGCCCGGCGCGCGGCTGCCGCAGGCCTCCAC
CTCCTCCGGCTTCTCCCCACCCCACGGGGTGGCGGCGGCAACAGCCGCAC
CAACCATCCGCTAGAAGACCATCACCGTTGCCGCAAGCGCTTTTACCCTT
GCGGCGCGATGATCGCCTTTCCTCGGGAGGAGCGGCAGGATTGATGCCTG
CGCACGGCGGGCGTTGGCGTCGTCGGCAACGGACCGAGGCGCGGATAGCA
CGGCGGATACCACGGGGCATTCGGGGTTAGAGGGCGGGAGCTAAAGGTGG
CAGCTAGAGGAGGATAACGGCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7582:417..840+

>mRNA_L-elsbetiae_contig7582.16488.1 ID=mRNA_L-elsbetiae_contig7582.16488.1|Name=mRNA_L-elsbetiae_contig7582.16488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7582:417..840+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCGGCACGAGGCACAAGCCGTGCGGGCAGCGGGACTGTCAGCAA
CCGCCGTGCCCGCCCGGCGCGCGGCTGCCGCAGGCCTCCACCTCCTCCGG
CTTCTCCCCACCCCACGGGGTGGCGGCGGCAACAGCCGCACCAACCATCC
GCTAGAAGACCATCACCGTTGCCGCAAGCGCTTTTACCCTTGCGGCGCGA
TGATCGCCTTTCCTCGGGAGGAGCGGCAGGATTGATGCCTGCGCACGGCG
GGCGTTGGCGTCGTCGGCAACGGACCGAGGCGCGGATAGCACGGCGGATA
CCACGGGGCATTCGGGGTTAGATGCCGGCGGCACGAGGCACAAGCCGTGC
GGGCAGCGGGACTGTCAGCAACCGCCGTGCCCGCCCGGCGCGCGGCTGCC
GCAGGCCTCCACCTCCTCCGGCTTCTCCCCACCCCACGGGGTGGCGGCGG
CAACAGCCGCACCAACCATCCGCTAGAAGACCATCACCGTTGCCGCAAGC
GCTTTTACCCTTGCGGCGCGATGATCGCCTTTCCTCGGGAGGAGCGGCAG
GATTGATGCCTGCGCACGGCGGGCGTTGGCGTCGTCGGCAACGGACCGAG
GCGCGGATAGCACGGCGGATACCACGGGGCATTCGGGGTTAG
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