mRNA_L-elsbetiae_contig758.16484.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig758.16484.1
Unique NamemRNA_L-elsbetiae_contig758.16484.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig758.16484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig758contigL-elsbetiae_contig758:11872..14159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size328
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig758.16484.1prot_L-elsbetiae_contig758.16484.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig758 11881..14159 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.8913288-UTR-L-elsbetiae_contig758:11871..118801622816841.8913288-UTR-L-elsbetiae_contig758:11871..11880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig758 11872..11880 +
1691683854.5359023-UTR-L-elsbetiae_contig758:11871..118801691683854.5359023-UTR-L-elsbetiae_contig758:11871..11880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig758 11872..11880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.901624-CDS-L-elsbetiae_contig758:11880..119861622816841.901624-CDS-L-elsbetiae_contig758:11880..11986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 11881..11986 +
1691683854.5474436-CDS-L-elsbetiae_contig758:11880..119861691683854.5474436-CDS-L-elsbetiae_contig758:11880..11986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 11881..11986 +
1622816841.9183605-CDS-L-elsbetiae_contig758:13947..141591622816841.9183605-CDS-L-elsbetiae_contig758:13947..14159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 13948..14159 +
1691683854.5582728-CDS-L-elsbetiae_contig758:13947..141591691683854.5582728-CDS-L-elsbetiae_contig758:13947..14159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig758 13948..14159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig758.16484.1

>prot_L-elsbetiae_contig758.16484.1 ID=prot_L-elsbetiae_contig758.16484.1|Name=mRNA_L-elsbetiae_contig758.16484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MALGWRRFATGKETEHARIMAVPALIVLIMLVSNAGTAGAFSPRTGAFSP
RTTPVIGGRASLVPSPLGRGARSPAAPSSSASTVAAAAAAAAAAPAGSMR
GVFHGE
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mRNA from alignment at L-elsbetiae_contig758:11872..14159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig758.16484.1 ID=mRNA_L-elsbetiae_contig758.16484.1|Name=mRNA_L-elsbetiae_contig758.16484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2288bp|location=Sequence derived from alignment at L-elsbetiae_contig758:11872..14159+ (Laminarionema elsbetiae ELsaHSoW15)
AACCAGGCGATGGCGCTCGGCTGGCGACGTTTTGCCACGGGAAAGGAGAC
AGAGCACGCTAGGATCATGGCAGTGCCTGCACTGATCGTGTTGATCATGT
TGGTGTCAAACGCAGGTACCTACATCCCCGACACATGTTCTCCACCTCTG
ATCGTTTGAACTTGCATTGACCTCGTTTGAACCACTTGAACACCGATACC
TTACCACAGAGAGTGCGTAGACATATAAAATATTGGTATGTCTATGCTTT
CACCACGACTGTATTGTTCCCAGCACAAGGCGTCGGCCAAGTAGCACTTA
TGGCGGCCGCAGGAGAGAGACTCTCTGTCGGTGTAATTTTCAGAGGACAT
CAACAGCCACCGAACACCGCAACCCCACGCTGTTGCTTCGACGAACTCAC
ACCACAGGGGTCACTACAATTACAGTAGGCGTCACTACAATCGCAGCATC
CGGCGAGAACAGGACCCTGTCAGTCTGTCTTGAAAATAAGCACACACAGC
AGCAGCTGTAGGCTGTAGGAGATTCGGTCGTCAAATACCGAGAGCTGACA
GTCTCGCCGTTCCTTTTCGGCACTGCTAGATTAGTCTATACTTAGACTAA
CACTATACACCGGTGTCGTAACTTCTTACATATGACACCGGGCATTTCTC
AGCGCAAACGTAAGTGTGTTGTGACCGCACGAGGCACAGCTATCAGGCGA
ACTATCGTTGAGATCAATACACCTAGTGGTTGCCGAGATATGCCGTATCG
ATTATGGGGCTCACAGCAGTACAGGAGGGGCAGTGTCGTGAGGCTTATTT
TCGACACCGGGCACAACTCGGCCCACAGATATCCGATCGACACAAATCCG
GATCCGCTATGATCGTATGGGCCACAGCTATCACGCAAGTTATCCGAGCT
GTGTGGGCTGAGAAACAACTCCGGTGTCGTAAATAAAAGCTCTGTGACAC
CGCCTTAGTACTTCTGTGACCCCTTCATTGTACGGCATATCTACGCCGTC
ACTTGGTGGATTCCCGTGATCAGTAGTTTCCCAGATAGCTGTGACTCGTG
CGGTCACAACGCTCTTGGGTTGGTGCCAATCCGAGCTATGTGGGCCGAGA
AATGCCTGATGTCGTATGGAAGAAATTACGACACCGGTGTCGTAAACAGC
AGTGTTCCTTTTTTTGAAAGAAAAAACATCAAAAAAACTTTTTTTTTTCT
AGCGCTCGGACGAGGGTCCAAGCAAATTTAGAACCCTAACCCTAACCCTA
GCTGCGTAGTAACCGCAGTGGTATTTGATTTATAACTACGTGTGCTGTGT
CTATCTACCCTTGGCATAGGTACAGTGATCGTAGCTCCCCTGCTAGTGTT
GGCAGGCTCAACAAAAGACATTTTTGTTGTCATCTTTGTGCATCGGACTG
TTGTACTCATGGGAGGGTAGAGGAGTTACATGTATGTGTGGTGAGAGACA
GATGATGACGTGTGTTTGGGGATGCACTTGGAAGAAGTGGAGGCAAGCTT
GGTCGTGTGTACCTCTCACCTTGTTATAAACAGCAGTATGTTTGTGGGGT
TTTAAGTTTACTTCAGAGAGAGGCAGGTAGGTGGGTACCTGATATCTACG
GATTCCCTCTGTCTCTCTCTCTCTCTCTCTCTTGCTACTTTCGAGGAATA
GGTTCGTCTCCAATGTTGGTTTGGTTCCATTTTTGATTTACTGTTGTCCC
TCTTGAGAATATGTAACTTTTGGCCAAATCTGGAATCTGGACGACCTATA
TATGTACCCCAAAATTGCGGTATCATCCCTATTGCAACCTGTGGGCCGTT
ACGTACAGCCTCGTAATATTGATATTGCAAGGTTAGAGTCACACATTTCG
CTCGGTTTTGTGGCGGGCGGAACGATGATGGACATCCCTCCCGTGTAACC
ACTCCAACTGGCAGGAGCCTGTAGTTGCGTTTGGGGGCCTGAACTTCTCG
CCGTATTTCCCCTTTCTACCTGCTGAGACCCAACTCTGCCCCCGCTCGAC
CTGAACTGCTCTCCGTATTCCCCCCTCTTGCCTGCTGTGAACTAACCCTG
CCCCCGCTCAACCGCCCAACGAACAGGGACGGCGGGGGCCTTCTCTCCGA
GAACGGGGGCCTTCTCTCCGAGAACCACCCCCGTCATCGGGGGTCGAGCG
TCGTTGGTCCCGTCGCCGCTTGGCCGAGGCGCCCGAAGTCCCGCCGCACC
CTCTTCTTCGGCCTCCACTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTCCTGCTGGGTCGATGAGGGGTGTATTTCACGGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig758:11872..14159+

>mRNA_L-elsbetiae_contig758.16484.1 ID=mRNA_L-elsbetiae_contig758.16484.1|Name=mRNA_L-elsbetiae_contig758.16484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig758:11872..14159+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTCGGCTGGCGACGTTTTGCCACGGGAAAGGAGACAGAGCACGC
TAGGATCATGGCAGTGCCTGCACTGATCGTGTTGATCATGTTGGTGTCAA
ACGCAGATGGCGCTCGGCTGGCGACGTTTTGCCACGGGAAAGGAGACAGA
GCACGCTAGGATCATGGCAGTGCCTGCACTGATCGTGTTGATCATGTTGG
TGTCAAACGCAGGGACGGCGGGGGCCTTCTCTCCGAGAACGGGGGCCTTC
TCTCCGAGAACCACCCCCGTCATCGGGGGTCGAGCGTCGTTGGTCCCGTC
GCCGCTTGGCCGAGGCGCCCGAAGTCCCGCCGCACCCTCTTCTTCGGCCT
CCACTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTGGGTCG
ATGAGGGGTGTATTTCACGGCGAGGGACGGCGGGGGCCTTCTCTCCGAGA
ACGGGGGCCTTCTCTCCGAGAACCACCCCCGTCATCGGGGGTCGAGCGTC
GTTGGTCCCGTCGCCGCTTGGCCGAGGCGCCCGAAGTCCCGCCGCACCCT
CTTCTTCGGCCTCCACTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
CCTGCTGGGTCGATGAGGGGTGTATTTCACGGCGAG
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