mRNA_L-elsbetiae_contig7579.16480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7579.16480.1
Unique NamemRNA_L-elsbetiae_contig7579.16480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7579.16480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7579contigL-elsbetiae_contig7579:3788..5214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1429
Cds size1425
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.6630259-CDS-L-elsbetiae_contig7579:3787..52121622816841.6630259-CDS-L-elsbetiae_contig7579:3787..5212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7579 3788..5212 +
1691683854.3900669-CDS-L-elsbetiae_contig7579:3787..52121691683854.3900669-CDS-L-elsbetiae_contig7579:3787..5212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7579 3788..5212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7579.16480.1prot_L-elsbetiae_contig7579.16480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7579 3788..5212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7579.16480.1

>prot_L-elsbetiae_contig7579.16480.1 ID=prot_L-elsbetiae_contig7579.16480.1|Name=mRNA_L-elsbetiae_contig7579.16480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp
EKELAATDSKEERSLQRRREDVRKGREMDKKQSASFKLAVEGGGPLSLDC
PISLSSSHSLGSLHSLGSPSGNAAVRVTGANVADNESLAMTTPHWKSKHR
MAEAEIILSPKAKLAIDRKAAAEERLKAAKAKARWMLLSKKITASILQEQ
MAQLDHVQHKQLDHAGRSQHRQKPATPNDSQLSPSGLSYFPSSTTVAALQ
KAREQQEPQQKPSSPAMLLLDLDWEQPSAAQALDDKGDGQIIFAAPSPAT
APIAGGDLFAHPPLPPRPRASPATTDRRDAGNGNGGGDGGDGDEAGGEFG
PDVSGSPVRLVLPLLSFSEGLPGNSSKMKRAEQPQTQPQQTTSTAFGVLE
ETSVSDEDESVQGLGPVVQAFASSSIDNAGNGTGANSAENHSGGKCDVDI
HHDSSDIAAATTPITPGSYYGSGTPPKADETRKKAETATMPFGGGGNNEC
SGEEEKKDHAEINANDDTGTREEND
back to top

mRNA from alignment at L-elsbetiae_contig7579:3788..5214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7579.16480.1 ID=mRNA_L-elsbetiae_contig7579.16480.1|Name=mRNA_L-elsbetiae_contig7579.16480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1427bp|location=Sequence derived from alignment at L-elsbetiae_contig7579:3788..5214+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGGAGCTGGCTGCCACGGACAGCAAGGAGGAGCGCTCTCTGCAGCG
CCGGCGCGAGGACGTCAGGAAGGGCCGTGAAATGGACAAGAAGCAATCGG
CTTCGTTTAAGCTGGCCGTAGAAGGGGGCGGTCCGCTCTCCCTCGATTGT
CCGATCTCCCTCAGTTCTTCGCACTCCCTCGGTTCTTTGCACTCCCTCGG
TTCTCCCTCGGGAAACGCAGCCGTCCGCGTCACGGGTGCCAACGTCGCCG
ACAATGAAAGTCTCGCCATGACGACACCCCACTGGAAGTCGAAGCACCGC
ATGGCGGAGGCCGAGATTATATTGTCACCCAAGGCGAAGCTTGCGATTGA
TCGAAAGGCAGCGGCAGAAGAGCGGTTGAAGGCGGCGAAAGCCAAGGCAA
GGTGGATGCTGCTATCCAAGAAGATAACGGCGTCAATTTTACAGGAGCAG
ATGGCCCAGCTGGACCACGTCCAGCACAAGCAGCTTGATCATGCGGGGCG
TTCGCAACACCGTCAGAAGCCTGCCACCCCCAACGATTCCCAGCTCTCGC
CCTCTGGTCTATCGTATTTCCCATCCTCTACCACGGTGGCAGCACTCCAG
AAAGCGAGAGAGCAGCAGGAGCCGCAACAGAAGCCCAGCAGCCCGGCAAT
GCTCCTTCTAGATTTGGACTGGGAGCAGCCGTCAGCCGCCCAAGCACTGG
ATGATAAAGGTGACGGTCAAATCATTTTCGCTGCTCCGTCGCCCGCAACC
GCTCCCATCGCTGGCGGCGACTTGTTTGCCCACCCGCCTCTCCCGCCTCG
CCCCCGAGCCTCCCCCGCGACGACAGACCGGCGCGATGCAGGGAATGGGA
ACGGAGGTGGCGACGGCGGGGATGGCGACGAAGCAGGTGGTGAGTTCGGT
CCCGATGTTTCTGGTTCGCCGGTGCGCTTGGTGCTACCGCTGCTGAGTTT
CTCAGAAGGTCTGCCCGGAAATAGTAGCAAGATGAAGAGGGCCGAGCAGC
CGCAGACGCAGCCACAGCAGACGACCTCTACTGCGTTCGGTGTGCTGGAA
GAGACTTCCGTGTCGGACGAGGACGAATCCGTCCAGGGTCTTGGCCCCGT
CGTGCAAGCGTTTGCCAGCAGCAGCATCGACAACGCCGGGAACGGAACAG
GGGCGAACTCGGCAGAGAACCACAGCGGTGGCAAGTGCGACGTCGACATC
CACCACGACTCTTCTGATATCGCAGCCGCCACCACCCCGATAACCCCCGG
CAGCTACTACGGCAGCGGAACACCGCCAAAGGCCGACGAGACCCGAAAGA
AGGCGGAAACTGCAACTATGCCTTTCGGGGGTGGCGGCAACAATGAGTGC
TCGGGCGAGGAGGAGAAGAAAGACCACGCGGAGATCAACGCAAACGACGA
CACCGGTACGCGTGAGGAAAATGATGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7579:3788..5214+

>mRNA_L-elsbetiae_contig7579.16480.1 ID=mRNA_L-elsbetiae_contig7579.16480.1|Name=mRNA_L-elsbetiae_contig7579.16480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig7579:3788..5214+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGGAGCTGGCTGCCACGGACAGCAAGGAGGAGCGCTCTCTGCAGCG
CCGGCGCGAGGACGTCAGGAAGGGCCGTGAAATGGACAAGAAGCAATCGG
CTTCGTTTAAGCTGGCCGTAGAAGGGGGCGGTCCGCTCTCCCTCGATTGT
CCGATCTCCCTCAGTTCTTCGCACTCCCTCGGTTCTTTGCACTCCCTCGG
TTCTCCCTCGGGAAACGCAGCCGTCCGCGTCACGGGTGCCAACGTCGCCG
ACAATGAAAGTCTCGCCATGACGACACCCCACTGGAAGTCGAAGCACCGC
ATGGCGGAGGCCGAGATTATATTGTCACCCAAGGCGAAGCTTGCGATTGA
TCGAAAGGCAGCGGCAGAAGAGCGGTTGAAGGCGGCGAAAGCCAAGGCAA
GGTGGATGCTGCTATCCAAGAAGATAACGGCGTCAATTTTACAGGAGCAG
ATGGCCCAGCTGGACCACGTCCAGCACAAGCAGCTTGATCATGCGGGGCG
TTCGCAACACCGTCAGAAGCCTGCCACCCCCAACGATTCCCAGCTCTCGC
CCTCTGGTCTATCGTATTTCCCATCCTCTACCACGGTGGCAGCACTCCAG
AAAGCGAGAGAGCAGCAGGAGCCGCAACAGAAGCCCAGCAGCCCGGCAAT
GCTCCTTCTAGATTTGGACTGGGAGCAGCCGTCAGCCGCCCAAGCACTGG
ATGATAAAGGTGACGGTCAAATCATTTTCGCTGCTCCGTCGCCCGCAACC
GCTCCCATCGCTGGCGGCGACTTGTTTGCCCACCCGCCTCTCCCGCCTCG
CCCCCGAGCCTCCCCCGCGACGACAGACCGGCGCGATGCAGGGAATGGGA
ACGGAGGTGGCGACGGCGGGGATGGCGACGAAGCAGGTGGTGAGTTCGGT
CCCGATGTTTCTGGTTCGCCGGTGCGCTTGGTGCTACCGCTGCTGAGTTT
CTCAGAAGGTCTGCCCGGAAATAGTAGCAAGATGAAGAGGGCCGAGCAGC
CGCAGACGCAGCCACAGCAGACGACCTCTACTGCGTTCGGTGTGCTGGAA
GAGACTTCCGTGTCGGACGAGGACGAATCCGTCCAGGGTCTTGGCCCCGT
CGTGCAAGCGTTTGCCAGCAGCAGCATCGACAACGCCGGGAACGGAACAG
GGGCGAACTCGGCAGAGAACCACAGCGGTGGCAAGTGCGACGTCGACATC
CACCACGACTCTTCTGATATCGCAGCCGCCACCACCCCGATAACCCCCGG
CAGCTACTACGGCAGCGGAACACCGCCAAAGGCCGACGAGACCCGAAAGA
AGGCGGAAACTGCAACTATGCCTTTCGGGGGTGGCGGCAACAATGAGTGC
TCGGGCGAGGAGGAGAAGAAAGACCACGCGGAGATCAACGCAAACGACGA
CACCGGTACGCGTGAGGAAAATGATGAGAAGGAGCTGGCTGCCACGGACA
GCAAGGAGGAGCGCTCTCTGCAGCGCCGGCGCGAGGACGTCAGGAAGGGC
CGTGAAATGGACAAGAAGCAATCGGCTTCGTTTAAGCTGGCCGTAGAAGG
GGGCGGTCCGCTCTCCCTCGATTGTCCGATCTCCCTCAGTTCTTCGCACT
CCCTCGGTTCTTTGCACTCCCTCGGTTCTCCCTCGGGAAACGCAGCCGTC
CGCGTCACGGGTGCCAACGTCGCCGACAATGAAAGTCTCGCCATGACGAC
ACCCCACTGGAAGTCGAAGCACCGCATGGCGGAGGCCGAGATTATATTGT
CACCCAAGGCGAAGCTTGCGATTGATCGAAAGGCAGCGGCAGAAGAGCGG
TTGAAGGCGGCGAAAGCCAAGGCAAGGTGGATGCTGCTATCCAAGAAGAT
AACGGCGTCAATTTTACAGGAGCAGATGGCCCAGCTGGACCACGTCCAGC
ACAAGCAGCTTGATCATGCGGGGCGTTCGCAACACCGTCAGAAGCCTGCC
ACCCCCAACGATTCCCAGCTCTCGCCCTCTGGTCTATCGTATTTCCCATC
CTCTACCACGGTGGCAGCACTCCAGAAAGCGAGAGAGCAGCAGGAGCCGC
AACAGAAGCCCAGCAGCCCGGCAATGCTCCTTCTAGATTTGGACTGGGAG
CAGCCGTCAGCCGCCCAAGCACTGGATGATAAAGGTGACGGTCAAATCAT
TTTCGCTGCTCCGTCGCCCGCAACCGCTCCCATCGCTGGCGGCGACTTGT
TTGCCCACCCGCCTCTCCCGCCTCGCCCCCGAGCCTCCCCCGCGACGACA
GACCGGCGCGATGCAGGGAATGGGAACGGAGGTGGCGACGGCGGGGATGG
CGACGAAGCAGGTGGTGAGTTCGGTCCCGATGTTTCTGGTTCGCCGGTGC
GCTTGGTGCTACCGCTGCTGAGTTTCTCAGAAGGTCTGCCCGGAAATAGT
AGCAAGATGAAGAGGGCCGAGCAGCCGCAGACGCAGCCACAGCAGACGAC
CTCTACTGCGTTCGGTGTGCTGGAAGAGACTTCCGTGTCGGACGAGGACG
AATCCGTCCAGGGTCTTGGCCCCGTCGTGCAAGCGTTTGCCAGCAGCAGC
ATCGACAACGCCGGGAACGGAACAGGGGCGAACTCGGCAGAGAACCACAG
CGGTGGCAAGTGCGACGTCGACATCCACCACGACTCTTCTGATATCGCAG
CCGCCACCACCCCGATAACCCCCGGCAGCTACTACGGCAGCGGAACACCG
CCAAAGGCCGACGAGACCCGAAAGAAGGCGGAAACTGCAACTATGCCTTT
CGGGGGTGGCGGCAACAATGAGTGCTCGGGCGAGGAGGAGAAGAAAGACC
ACGCGGAGATCAACGCAAACGACGACACCGGTACGCGTGAGGAAAATGAT
back to top