mRNA_L-elsbetiae_contig7579.16479.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7579.16479.1
Unique NamemRNA_L-elsbetiae_contig7579.16479.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7579.16479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7579contigL-elsbetiae_contig7579:2380..3664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size646
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.6221857-CDS-L-elsbetiae_contig7579:2379..24571622816841.6221857-CDS-L-elsbetiae_contig7579:2379..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7579 2380..2457 +
1691683854.3686447-CDS-L-elsbetiae_contig7579:2379..24571691683854.3686447-CDS-L-elsbetiae_contig7579:2379..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7579 2380..2457 +
1622816841.6326025-CDS-L-elsbetiae_contig7579:3097..36641622816841.6326025-CDS-L-elsbetiae_contig7579:3097..3664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7579 3098..3664 +
1691683854.381117-CDS-L-elsbetiae_contig7579:3097..36641691683854.381117-CDS-L-elsbetiae_contig7579:3097..3664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7579 3098..3664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7579.16479.1prot_L-elsbetiae_contig7579.16479.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7579 2380..3664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7579.16479.1

>prot_L-elsbetiae_contig7579.16479.1 ID=prot_L-elsbetiae_contig7579.16479.1|Name=mRNA_L-elsbetiae_contig7579.16479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
GEFRARAQRSPAAFDASSRGEEIKAQSDPEQAPVPDATAGGVVEQGMEGS
CGGSGQEREPDASPSPVQPTRLFASGDTAVTGDPETLDGGHGRGDPHTDH
SSTATLSVRTNIPEGEIRTNGGGSGGGGGNADANITTFLRSPDVELDCRF
DGLRIEQEGGAAGEVKGEKHKQEQLDGPYHTIIEDLETSVKIEAFKRLDA
ESRIKNLEDEVHRLE
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mRNA from alignment at L-elsbetiae_contig7579:2380..3664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7579.16479.1 ID=mRNA_L-elsbetiae_contig7579.16479.1|Name=mRNA_L-elsbetiae_contig7579.16479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1285bp|location=Sequence derived from alignment at L-elsbetiae_contig7579:2380..3664+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGTTCCGAGCGAGAGCACAGCGCTCTCCAGCAGCCTTTGACGCATC
GTCCCGTGGTGAAGAAATAAAGGCACAGGTGTGATGATGGTGTGCATGGA
TTTCCATGGACCCCAGCCTCGACAATGTGCTGTTTCAGAGTTGGGGTGCC
TGTCGTATTCCAGGTCTGGTGGTTGTCTGCGAATGCATTCGTGTCTCGGC
AAGTTCGTTCGGCGTTGATTGTGCGAACCTCAAACGAAATATCTCGGGAC
AGCCTTTGGCTTGCTTTGCACTCCGCTCGGGTCGCACCGACTGTCGCCCT
CCAGCGGTGGTATCGATGGTTTGCCGCTTCGTGCTTCACCGTTACACCTT
GGGAGCCCTCAAGGTAGCCGGGGCGGGTATTCCTTTTATCCTCTGCATGA
AATAATCTTGCCCAGAACTCACATGGCGTCCTTTTATGTAACTTAGAGAC
TGCTGTGGAGGAAATTATTCCCGATATGCATCCAAAACCTGCCCTACCAG
TTTATTTCACTTTTTACTTGGCTTCTTTGTCCGATATCTCTCTCACCCAC
GAGACGACAGACTTCCTCGCTCGGAATAGTATTGGTGTCCAAAATAGGGC
GGACATGTTATGTGCTAATGAAATGTTGACAATTGTCCTATTCCCTGGTA
GTCGCTGACGGTACGACCATGCCCTGCCCGTCTCCAATTATGTTTGTGTC
TTTCTGGTCTCACGAAAGAGCGATCCGGAACAAGCACCTGTTCCCGACGC
GACAGCAGGAGGAGTGGTGGAACAGGGCATGGAGGGGAGCTGCGGCGGTA
GTGGCCAGGAACGAGAGCCCGATGCATCGCCCTCGCCTGTGCAACCAACT
CGACTCTTTGCTTCCGGAGACACCGCTGTCACCGGTGATCCCGAGACACT
CGACGGTGGCCATGGCAGAGGGGATCCGCACACCGATCACTCTTCTACCG
CCACTTTGTCCGTTCGGACCAACATCCCCGAGGGGGAAATCAGGACTAAC
GGCGGTGGCAGTGGCGGTGGTGGTGGCAATGCCGACGCCAACATCACCAC
CTTTCTTCGCAGCCCTGACGTCGAGCTCGACTGCCGCTTCGATGGGCTGC
GAATCGAGCAGGAGGGTGGCGCTGCCGGGGAGGTCAAAGGCGAGAAGCAC
AAGCAAGAGCAGCTTGATGGTCCCTATCACACCATCATCGAAGACCTCGA
GACGTCCGTGAAGATCGAGGCCTTCAAGCGCCTAGACGCCGAGAGCCGGA
TCAAGAATCTGGAAGACGAGGTGCACCGACTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7579:2380..3664+

>mRNA_L-elsbetiae_contig7579.16479.1 ID=mRNA_L-elsbetiae_contig7579.16479.1|Name=mRNA_L-elsbetiae_contig7579.16479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig7579:2380..3664+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGTTCCGAGCGAGAGCACAGCGCTCTCCAGCAGCCTTTGACGCATC
GTCCCGTGGTGAAGAAATAAAGGCACAGGGCGAGTTCCGAGCGAGAGCAC
AGCGCTCTCCAGCAGCCTTTGACGCATCGTCCCGTGGTGAAGAAATAAAG
GCACAGAGCGATCCGGAACAAGCACCTGTTCCCGACGCGACAGCAGGAGG
AGTGGTGGAACAGGGCATGGAGGGGAGCTGCGGCGGTAGTGGCCAGGAAC
GAGAGCCCGATGCATCGCCCTCGCCTGTGCAACCAACTCGACTCTTTGCT
TCCGGAGACACCGCTGTCACCGGTGATCCCGAGACACTCGACGGTGGCCA
TGGCAGAGGGGATCCGCACACCGATCACTCTTCTACCGCCACTTTGTCCG
TTCGGACCAACATCCCCGAGGGGGAAATCAGGACTAACGGCGGTGGCAGT
GGCGGTGGTGGTGGCAATGCCGACGCCAACATCACCACCTTTCTTCGCAG
CCCTGACGTCGAGCTCGACTGCCGCTTCGATGGGCTGCGAATCGAGCAGG
AGGGTGGCGCTGCCGGGGAGGTCAAAGGCGAGAAGCACAAGCAAGAGCAG
CTTGATGGTCCCTATCACACCATCATCGAAGACCTCGAGACGTCCGTGAA
GATCGAGGCCTTCAAGCGCCTAGACGCCGAGAGCCGGATCAAGAATCTGG
AAGACGAGGTGCACCGACTGGAGAGCGATCCGGAACAAGCACCTGTTCCC
GACGCGACAGCAGGAGGAGTGGTGGAACAGGGCATGGAGGGGAGCTGCGG
CGGTAGTGGCCAGGAACGAGAGCCCGATGCATCGCCCTCGCCTGTGCAAC
CAACTCGACTCTTTGCTTCCGGAGACACCGCTGTCACCGGTGATCCCGAG
ACACTCGACGGTGGCCATGGCAGAGGGGATCCGCACACCGATCACTCTTC
TACCGCCACTTTGTCCGTTCGGACCAACATCCCCGAGGGGGAAATCAGGA
CTAACGGCGGTGGCAGTGGCGGTGGTGGTGGCAATGCCGACGCCAACATC
ACCACCTTTCTTCGCAGCCCTGACGTCGAGCTCGACTGCCGCTTCGATGG
GCTGCGAATCGAGCAGGAGGGTGGCGCTGCCGGGGAGGTCAAAGGCGAGA
AGCACAAGCAAGAGCAGCTTGATGGTCCCTATCACACCATCATCGAAGAC
CTCGAGACGTCCGTGAAGATCGAGGCCTTCAAGCGCCTAGACGCCGAGAG
CCGGATCAAGAATCTGGAAGACGAGGTGCACCGACTGGAG
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