mRNA_L-elsbetiae_contig7578.16478.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7578.16478.1
Unique NamemRNA_L-elsbetiae_contig7578.16478.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.620e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            QRAFEDAAFGL V G+SGVVSTDSGVHLIMRTA
Sbjct:  474 QRAFEDAAFGLPVGGLSGVVSTDSGVHLIMRTA 506
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A0C9YTG6_9AGAM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9YTG6_9AGAM)

HSP 1 Score: 57.0 bits (136), Expect = 5.540e-9
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            Q+ FEDAAF LQV  ISG+VSTDSGVHLIMRTA
Sbjct:  140 QKPFEDAAFALQVKEISGIVSTDSGVHLIMRTA 172
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A067C1S1_SAPPC (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1S1_SAPPC)

HSP 1 Score: 55.5 bits (132), Expect = 7.270e-9
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            Q+ FEDAAFGLQV  ISG+V TDSGVH+I+RTA
Sbjct:   80 QKPFEDAAFGLQVGEISGIVDTDSGVHIIVRTA 112
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A0C3KBG4_PISTI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3KBG4_PISTI)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-8
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            Q+ FEDAAF LQV  ISG+VSTDSGVHLIMRTA
Sbjct:  209 QKPFEDAAFALQVKEISGIVSTDSGVHLIMRTA 241
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A5E3WIA3_9AGAM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WIA3_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 1.970e-8
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            Q+AFEDAAF L+V  +SGVVSTDSGVHLI+RTA
Sbjct:  134 QKAFEDAAFALRVGEMSGVVSTDSGVHLILRTA 166
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A1V9YCA6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCA6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.120e-8
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            Q+ FEDAAFGL+V  +SG++ TDSGVH+I+RTA
Sbjct:   80 QKPFEDAAFGLEVGQLSGIIETDSGVHIILRTA 112
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A8H6HW59_9AGAR (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6HW59_9AGAR)

HSP 1 Score: 54.7 bits (130), Expect = 4.420e-8
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRT 96
            Q+AFEDA+FGL+V  +S VVSTDSGVHLIMRT
Sbjct:  143 QKAFEDASFGLEVGQVSDVVSTDSGVHLIMRT 174
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A0C3AYI5_9AGAM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3AYI5_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 5.530e-8
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRT 96
            Q+ FEDAAF L+V  ISGVVSTDSGVHLIMRT
Sbjct:  135 QKPFEDAAFSLKVGEISGVVSTDSGVHLIMRT 166
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: A0A418DJ41_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DJ41_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.460e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            Q+ FEDA+FGL V  +SGVV TDSGVH+I+RTA
Sbjct:   44 QKPFEDASFGLPVGELSGVVDTDSGVHIILRTA 76
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BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Match: K3WUY5_GLOUD (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUY5_GLOUD)

HSP 1 Score: 52.4 bits (124), Expect = 8.110e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA 99
            Q+ FEDA FGL+V  +SGVV TDSGVH+I+RTA
Sbjct:   63 QKPFEDATFGLRVGELSGVVDTDSGVHIILRTA 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7578.16478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9M4_9PHAE1.620e-1090.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0C9YTG6_9AGAM5.540e-981.82Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pisoli... [more]
A0A067C1S1_SAPPC7.270e-975.76Peptidyl-prolyl cis-trans isomerase n=2 Tax=Saprol... [more]
A0A0C3KBG4_PISTI1.190e-881.82Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pisoli... [more]
A0A5E3WIA3_9AGAM1.970e-878.79Peptidyl-prolyl cis-trans isomerase n=1 Tax=Peniop... [more]
A0A1V9YCA6_9STRA4.120e-866.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Achlya... [more]
A0A8H6HW59_9AGAR4.420e-878.13Peptidyl-prolyl cis-trans isomerase n=2 Tax=Tulose... [more]
A0A0C3AYI5_9AGAM5.530e-881.25Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sclero... [more]
A0A418DJ41_9STRA7.460e-869.70Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
K3WUY5_GLOUD8.110e-869.70Peptidyl-prolyl cis-trans isomerase n=1 Tax=Globis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7578contigL-elsbetiae_contig7578:53..154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.5926971-CDS-L-elsbetiae_contig7578:52..1541622816841.5926971-CDS-L-elsbetiae_contig7578:52..154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7578 53..154 +
1691683854.3591177-CDS-L-elsbetiae_contig7578:52..1541691683854.3591177-CDS-L-elsbetiae_contig7578:52..154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7578 53..154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7578.16478.1prot_L-elsbetiae_contig7578.16478.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7578 53..154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7578.16478.1

>prot_L-elsbetiae_contig7578.16478.1 ID=prot_L-elsbetiae_contig7578.16478.1|Name=mRNA_L-elsbetiae_contig7578.16478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=34bp
QRAFEDAAFGLQVNGISGVVSTDSGVHLIMRTA*
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mRNA from alignment at L-elsbetiae_contig7578:53..154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7578.16478.1 ID=mRNA_L-elsbetiae_contig7578.16478.1|Name=mRNA_L-elsbetiae_contig7578.16478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=102bp|location=Sequence derived from alignment at L-elsbetiae_contig7578:53..154+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCGCGTTTGAAGACGCCGCCTTCGGGCTCCAGGTCAATGGTATAAG
CGGAGTGGTTTCCACTGACAGCGGTGTTCACCTCATCATGCGCACCGCTT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7578:53..154+

>mRNA_L-elsbetiae_contig7578.16478.1 ID=mRNA_L-elsbetiae_contig7578.16478.1|Name=mRNA_L-elsbetiae_contig7578.16478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=204bp|location=Sequence derived from alignment at L-elsbetiae_contig7578:53..154+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCGCGTTTGAAGACGCCGCCTTCGGGCTCCAGGTCAATGGTATAAG
CGGAGTGGTTTCCACTGACAGCGGTGTTCACCTCATCATGCGCACCGCTT
GACAGCGCGCGTTTGAAGACGCCGCCTTCGGGCTCCAGGTCAATGGTATA
AGCGGAGTGGTTTCCACTGACAGCGGTGTTCACCTCATCATGCGCACCGC
TTGA
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