mRNA_L-elsbetiae_contig7573.16473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7573.16473.1
Unique NamemRNA_L-elsbetiae_contig7573.16473.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.270e-49
Identity = 119/250 (47.60%), Postives = 149/250 (59.60%), Query Frame = 3
Query:  522 VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGRE-VLFDDTPLILADDGLRTKPVGGGD-AVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRR 1265
            VPLD AA +GH+ VVRELIQ++GI+GC   S G  AL  AA  QH+DIMAIL +AGVVD+G  LY AA  G EA+VKFLL+ R + G     G    YLN R+  G TPL+    G             + ++VR+L+DAGADT+S V+V + +  V+F+DTPL      LR K V  G  A +E   RLEAI RLLLRV+AVHA+SWLWP     +G        R     P      L L+LPIL+RR
Sbjct:  280 VPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGA---YLNARDVNGYTPLVVCTQGCFSQ---------APRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIG--------RATETDPEPPLPALKLMLPILKRR 509          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 6.510e-47
Identity = 110/239 (46.03%), Postives = 140/239 (58.58%), Query Frame = 3
Query:  546 NGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVT-SGREVLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILR 1259
            +GHS+VVRELIQQ+G++GC G S G+++LR AA EQ+VDIM IL   GVVD+G  L  AAE+ RE +VKFLLQ +         GG     N  +PFG TPL+ ++   G +         S ++ R LID GADT S V VT SG      DTPL  A   LR   VGG +A EEQ   L+AI RLL ++EAVHA+SWLW      +G A   +SSR     P + G  L  +  +LR
Sbjct:  190 HGHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQA-------GGGTWYVNNTLDPFGRTPLVCTIEACGSS---------SPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMK---PTTAGPTLKRMSTVLR 409          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 8.590e-46
Identity = 132/335 (39.40%), Postives = 181/335 (54.03%), Query Frame = 3
Query:  285 LDARDCEGRTPLHLAALQGHSEVMSVLMEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSALSGSNGFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTS---GREVLFDDTPLILADDGLR--TKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKE-PLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRRR 1271
            L++R  +G TPL+ AA +G+ +   +L+ A                                     L+ +   +G   +PLDAAA NGH +VV ELI+QVGI GC G+SGG+ AL+ AA  ++++IM IL +AGVVD+G+ L  AA +G E  +KFLL+Q R R  +        Y+N R+  G TPLL  +       +   P     +VVRLL++AGADT+S V V +   G +V    TPL L  + +R   K VG G A  EQ  +LEAIRRLLLRVEAVHA+SWLWP +   +   AA+G+   TA  T         + LP+L  RRR
Sbjct:  141 LNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPL--------------------------------LTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDE----AAYVNTRDRGGVTPLLWGI-------QHYRP-----RVVRLLVEAGADTTSPVAVRNQLGGDDVSI--TPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTA--------VTLPMLVTRRR 417          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.440e-45
Identity = 120/260 (46.15%), Postives = 157/260 (60.38%), Query Frame = 3
Query:  498 SGSNGFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDS-GVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNF-RNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGRE-VLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKE-PLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRR 1265
            S S+G   VPL+ AA  G S VV EL+++ GI+ C G SGGLDALR AA+   VDIM++LMDAGVVD  G+ L AA   G+EAAV FLL+Q+  R   +       Y+N  R+  G T LL S         G +    + ++ R L+DAGADT+SAV++ + R     + TPL   +D    +  G   A +EQ  RLEA RR+LLRV AVHA+SW+WP + PLL   A   +S RTA+ +P    TQL  VLP+LRRR
Sbjct:  150 SESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS-------YVNIARDDDGLTALLWSF-------RGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLL---ARPANSPRTAKHSP----TQLTTVLPVLRRR 388          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.450e-44
Identity = 115/254 (45.28%), Postives = 148/254 (58.27%), Query Frame = 3
Query:  513 FEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGREVL-FDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRRR 1271
            ++ +PLD AA NG   VV EL+Q+ GI+GC G +GG+ AL+ AAM+ H+D+M  L  AGVVD+G+ L  A  +G    VKFLLQQ+       P+         R+P G TPL+ ++       + G     S KVVRLL+DAGADT+S VR T     L    TPL LA + LR K        +E   RLE IRRLLLRVEAVHA SWLW      VG  A G+++ T  ++ ++   QL  VLPILRRR R
Sbjct:  182 WQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNG----TPSEKSAYVSRPRDPCGRTPLICNI-------DVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAA-TETESSSTTAPQLRTVLPILRRRAR 423          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.740e-44
Identity = 116/257 (45.14%), Postives = 154/257 (59.92%), Query Frame = 3
Query:  510 GFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAG-VVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASV-AGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVT--SGREVLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPK-EPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRR 1265
            G   VPL+ AA +G+  V RE+I+QVGI+GC G SGG++ALR AA E+H++ MA+L+DAG VVD+G  L  AAE GR  AVKFLL++R+       NG        R+P+G TP++ +V  G G+        L S K+VRLL+DAGA+T+ AV VT  + R     +TPL      LR   V G  A +EQ  RL+  R LL R EAVHA+SWLW   EP  +  AA  + + TA    A   T L  + P+LRR+
Sbjct:  180 GVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADADAYVNG-------TRDPYGRTPVMCAVDVGAGR--------LCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVA---TPLRAMSPMLRRK 418          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.450e-43
Identity = 132/340 (38.82%), Postives = 177/340 (52.06%), Query Frame = 3
Query:  261 CSASF------GAELDARDCEGRTPLHLAALQGHSEVMSVLMEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSALSGSNGFEA-VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGR-EVLFDDTPLILADDGLRTKPVGGGDA----VEEQFCRLEAIRRLLLRVEAVHALSWLWPKE-PLLVGGAAKGSSSRTARKTPASDGTQLLL 1241
            C+AS       G+ ++ R  +G TPL+ AA  G+   + +L+ A                                    PL   +  +G E  +PLD AA NGH +VV ELI+QVGI GC G+SGG +ALR AA+   +DIMAIL DAGVVD+G+ L  AA +G EA +KFLL+Q R R     +     Y+N  N  G T LL  +       +   P     +VV+LL++AGADT+S V + +   E  F  TPL     GL    +GG  A    +EEQ  +LE IRRLLLR EAVHA+SWLWP + P +    AKG+   TA  T A+    L++
Sbjct:  127 CAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLA---------------------------------KADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGR----KSTDRAAYMNTLNGVGLTSLLDGI-------QRCRP-----RVVQLLVEAGADTTSPVLICNQPGEDDFHITPL-----GLTMCLLGGRSAKPLTMEEQN-KLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMI 411          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.760e-42
Identity = 115/252 (45.63%), Postives = 152/252 (60.32%), Query Frame = 3
Query:  522 VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRR-GPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGREV-LFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRRR 1271
            +PLD+AA NG+  V+RELIQ+VGI+GC G S G  AL  A   + V  MA+L  AGVVD+G  L  +A  GREA+VK+LLQ   +  GP A       Y+N R+  G+TPLL+S+   G  ++   P     +V RLL++AGADT++ +R T+   V LF  TPL L    L+ K V G    +++  RLE IRRLLL+VEAVHA SWLWP      GG    +++     T A+   +L  VLPILRRR R
Sbjct:  171 LPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAKHYGPGA-------YVNVRDRNGTTPLLSSIYVCGVDEQSSFP-----RVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSG-DGGRRPDNAAEVTTATNAA-APKLGRVLPILRRRAR 408          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 5.800e-42
Identity = 115/270 (42.59%), Postives = 146/270 (54.07%), Query Frame = 3
Query:  483 PLSALSGSNGFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSI-------KVVRLLIDAGADTSSAVRVTSGREVLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAA--KGSSSRTARKTPASDGTQLLLVLPILRRR 1265
            PL     S+G   VPLD AA NGH  V REL+Q+ GI+GCAGAS G+DAL  AA++QH+D+MA+L DAGVVD+G  L A    GRE A+KFLL+Q+             G    R  + STP         +   G  P+L ++       +VVRLL+DAGAD + AVRV  G       TPL  A   L  K V    A  +Q   L A RRLLL+VE VHA SWLW       GG A    +  +   +T +++G  L   LPI+ RR
Sbjct:  170 PLLPTRMSSGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQK-------------GEGTARTTYASTP---------RDGRGHTPLLSAVTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLW-------GGHAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRR 410          
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.880e-38
Identity = 105/250 (42.00%), Postives = 144/250 (57.60%), Query Frame = 3
Query:  522 VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGREV-LFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRR 1268
            +PLDAA  + H+ VVR+LIQQ+GI+GC GAS G DA R A   Q  DI+ +L D G +D+G VL  AA++G EA VK LLQQ+R +           Y+N + P G TP+   V  +G+    G P     +V+RL +DAGADT+S VR+T+   V LF  TPL      LR +   G D+ + + C LEA+RR+LL++EA+ A+SW W  + L     A     R   K+  +  T L L LP  R+ R
Sbjct:  348 LPLDAAVISKHAAVVRKLIQQLGIQGCGGASAGADASRWAVQTQQYDIVVMLADTGEIDTGRVLIDAAKFGSEALVKILLQQQRGKHMDWDT-----YVNKKQPDGRTPV---VCRIGRALRSGSP-----RVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARGIDSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERAV-QDGRPRAKSRLTVDTPLGLTLPRRRKAR 583          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT11_ECTSI1.270e-4947.60EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1U9_ECTSI6.510e-4746.03EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE8.590e-4639.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU3_ECTSI2.440e-4546.15EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVK3_ECTSI1.450e-4445.28EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI4.740e-4445.14EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
A0A6H5KQV0_9PHAE2.450e-4338.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI2.760e-4245.63EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LL76_ECTSI5.800e-4242.59EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KSA9_9PHAE1.880e-3842.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7573contigL-elsbetiae_contig7573:8179..9449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue1.7e-51
Seed eggNOG ortholog2880.D7FT11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1271
Cds size918
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.0976589-UTR-L-elsbetiae_contig7573:8178..85311622816841.0976589-UTR-L-elsbetiae_contig7573:8178..8531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7573 8179..8531 +
1691683854.0089424-UTR-L-elsbetiae_contig7573:8178..85311691683854.0089424-UTR-L-elsbetiae_contig7573:8178..8531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7573 8179..8531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.1089802-CDS-L-elsbetiae_contig7573:8531..94491622816841.1089802-CDS-L-elsbetiae_contig7573:8531..9449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7573 8532..9449 +
1691683854.0204287-CDS-L-elsbetiae_contig7573:8531..94491691683854.0204287-CDS-L-elsbetiae_contig7573:8531..9449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7573 8532..9449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7573.16473.1prot_L-elsbetiae_contig7573.16473.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7573 8532..9449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7573.16473.1

>prot_L-elsbetiae_contig7573.16473.1 ID=prot_L-elsbetiae_contig7573.16473.1|Name=mRNA_L-elsbetiae_contig7573.16473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=306bp
MSVLMEAGANVDSPATNGRTPLYMAAYGGRVDAIEKLLRANANPLSALSG
SNGFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQ
HVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGG
LLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADT
SSAVRVTSGREVLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRL
LLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPI
LRRRRR
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mRNA from alignment at L-elsbetiae_contig7573:8179..9449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7573.16473.1 ID=mRNA_L-elsbetiae_contig7573.16473.1|Name=mRNA_L-elsbetiae_contig7573.16473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1271bp|location=Sequence derived from alignment at L-elsbetiae_contig7573:8179..9449+ (Laminarionema elsbetiae ELsaHSoW15)
AGTACCGCTACCGCGCCGGCAGTGCTCCCGATGAGACTTTCCAGGCAGCA GTGGCAGGATGAGCTGCACTCTGCCGCCTACCATGGAGTCACCGAGGCAA TAGTAGTCGTGCTCTCGCAGGGATTAATCAGCATCGACAAAGGTGACCCA GCGGGCAGGACCGCCCTCATGCATGCCGCCCAGGAGGGTCACTCGCGCGT TGCAAGGATCCTGCTCGATAGGGGAGCCAACGTGTCCATTGTGGCGGATC GCGAGGTCACTGCTCTGCATCTTTCGGTGCAGAACTGGACGCAAGGGACT GTGAAGGTCGCACACCGCTTCATCTGGCTGCGCTCCAAGGGCACTCAGAG GTGATGTCAGTACTGATGGAGGCGGGCGCGAATGTAGATAGCCCTGCGAC GAATGGCCGCACACCGCTCTACATGGCGGCGTATGGAGGACGCGTGGACG CCATCGAAAAGCTCCTTCGGGCGAATGCGAACCCGTTGTCGGCCCTTTCG GGTTCCAATGGGTTCGAAGCTGTCCCGCTGGACGCTGCTGCGAACAATGG TCACTCGAAGGTGGTGCGCGAGCTGATCCAGCAGGTCGGGATCAAAGGTT GTGCTGGTGCAAGCGGCGGTTTAGATGCCCTCAGAGCGGCCGCAATGGAG CAGCATGTGGATATCATGGCCATACTGATGGACGCTGGGGTAGTGGATTC GGGAGTCGTCCTGTACGCTGCGGCCGAATGGGGCCGGGAAGCGGCAGTGA AGTTCCTGTTGCAGCAGCGACGCCGGCGGGGGCCCATCGCCCCCAATGGT GGACTACTTGGATACCTCAACTTCCGCAACCCTTTCGGCTCGACGCCCTT GCTCGCTAGTGTTGCTGGTGTCGGCAAGACGGACGAGGGCGGCGAGCCCA TGTTGCTTTCGATCAAAGTGGTGCGTTTGCTAATCGATGCGGGAGCCGAC ACGTCATCGGCCGTTCGCGTCACCAGCGGGAGGGAGGTGCTGTTCGACGA TACACCGCTGATTTTGGCCGATGATGGCCTTCGTACAAAGCCGGTGGGAG GGGGGGACGCAGTAGAGGAGCAGTTTTGCAGGCTAGAGGCTATCCGCCGC TTGCTGTTGCGGGTAGAAGCGGTGCACGCCTTGTCGTGGTTGTGGCCCAA GGAGCCCCTCTTGGTCGGCGGTGCTGCAAAAGGTTCAAGCAGCAGGACAG CCAGGAAGACTCCAGCAAGTGATGGCACGCAGCTGCTGTTAGTGCTGCCG ATCTTGAGGCGCAGGAGACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7573:8179..9449+

>mRNA_L-elsbetiae_contig7573.16473.1 ID=mRNA_L-elsbetiae_contig7573.16473.1|Name=mRNA_L-elsbetiae_contig7573.16473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1836bp|location=Sequence derived from alignment at L-elsbetiae_contig7573:8179..9449+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGTACTGATGGAGGCGGGCGCGAATGTAGATAGCCCTGCGACGAA
TGGCCGCACACCGCTCTACATGGCGGCGTATGGAGGACGCGTGGACGCCA
TCGAAAAGCTCCTTCGGGCGAATGCGAACCCGTTGTCGGCCCTTTCGGGT
TCCAATGGGTTCGAAGCTGTCCCGCTGGACGCTGCTGCGAACAATGGTCA
CTCGAAGGTGGTGCGCGAGCTGATCCAGCAGGTCGGGATCAAAGGTTGTG
CTGGTGCAAGCGGCGGTTTAGATGCCCTCAGAGCGGCCGCAATGGAGCAG
CATGTGGATATCATGGCCATACTGATGGACGCTGGGGTAGTGGATTCGGG
AGTCGTCCTGTACGCTGCGGCCGAATGGGGCCGGGAAGCGGCAGTGAAGT
TCCTGTTGCAGCAGCGACGCCGGCGGGGGCCCATCGCCCCCAATGGTGGA
CTACTTGGATACCTCAACTTCCGCAACCCTTTCGGCTCGACGCCCTTGCT
CGCTAGTGTTGCTGGTGTCGGCAAGACGGACGAGGGCGGCGAGCCCATGT
TGCTTTCGATCAAAGTGGTGCGTTTGCTAATCGATGCGGGAGCCGACACG
TCATCGGCCGTTCGCGTCACCAGCGGGAGGGAGGTGCTGTTCGACGATAC
ACCGCTGATTTTGGCCGATGATGGCCTTCGTACAAAGCCGGTGGGAGGGG
GGGACGCAGTAGAGGAGCAGTTTTGCAGGCTAGAGGCTATCCGCCGCTTG
CTGTTGCGGGTAGAAGCGGTGCACGCCTTGTCGTGGTTGTGGCCCAAGGA
GCCCCTCTTGGTCGGCGGTGCTGCAAAAGGTTCAAGCAGCAGGACAGCCA
GGAAGACTCCAGCAAGTGATGGCACGCAGCTGCTGTTAGTGCTGCCGATC
TTGAGGCGCAGGAGACGCATGTCAGTACTGATGGAGGCGGGCGCGAATGT
AGATAGCCCTGCGACGAATGGCCGCACACCGCTCTACATGGCGGCGTATG
GAGGACGCGTGGACGCCATCGAAAAGCTCCTTCGGGCGAATGCGAACCCG
TTGTCGGCCCTTTCGGGTTCCAATGGGTTCGAAGCTGTCCCGCTGGACGC
TGCTGCGAACAATGGTCACTCGAAGGTGGTGCGCGAGCTGATCCAGCAGG
TCGGGATCAAAGGTTGTGCTGGTGCAAGCGGCGGTTTAGATGCCCTCAGA
GCGGCCGCAATGGAGCAGCATGTGGATATCATGGCCATACTGATGGACGC
TGGGGTAGTGGATTCGGGAGTCGTCCTGTACGCTGCGGCCGAATGGGGCC
GGGAAGCGGCAGTGAAGTTCCTGTTGCAGCAGCGACGCCGGCGGGGGCCC
ATCGCCCCCAATGGTGGACTACTTGGATACCTCAACTTCCGCAACCCTTT
CGGCTCGACGCCCTTGCTCGCTAGTGTTGCTGGTGTCGGCAAGACGGACG
AGGGCGGCGAGCCCATGTTGCTTTCGATCAAAGTGGTGCGTTTGCTAATC
GATGCGGGAGCCGACACGTCATCGGCCGTTCGCGTCACCAGCGGGAGGGA
GGTGCTGTTCGACGATACACCGCTGATTTTGGCCGATGATGGCCTTCGTA
CAAAGCCGGTGGGAGGGGGGGACGCAGTAGAGGAGCAGTTTTGCAGGCTA
GAGGCTATCCGCCGCTTGCTGTTGCGGGTAGAAGCGGTGCACGCCTTGTC
GTGGTTGTGGCCCAAGGAGCCCCTCTTGGTCGGCGGTGCTGCAAAAGGTT
CAAGCAGCAGGACAGCCAGGAAGACTCCAGCAAGTGATGGCACGCAGCTG
CTGTTAGTGCTGCCGATCTTGAGGCGCAGGAGACGC
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