mRNA_L-elsbetiae_contig7571.16472.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7571.16472.1
Unique NamemRNA_L-elsbetiae_contig7571.16472.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7571.16472.1 vs. uniprot
Match: D8LRQ1_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 7.130e-31
Identity = 98/204 (48.04%), Postives = 128/204 (62.75%), Query Frame = 1 
Query:  217 RACTLLACGWSFQSWGCTDGFTGSSWRTS-----SKATSATXXXXXXXXXXXXSVWQQRRAPPYAAVAASRSR-RRITGATLACSQTGAASTLEVQENGGEGTK-LGGTAWVE------DDLEAAAAAQAEAAADEEAPDVNSKRGKQRKPNNANIGRNKLFDLLNDLEGGGG--CDSIDLLDIGGVAAEGSSSSSSVVVDGEA 783
            RACTLLACG S QSW CTDGF G++WR+S     ++ T+              + WQQRR  P A V ASRS  RR++GAT+ACS+T +ASTL+VQENGG  T+ LG   W +      D++EAA A  A   +  +  D + +R  +RKP  AN GRNKLFDLLNDLEGGGG   ++I+LL +   A     SSSS++++G A
Sbjct:    3 RACTLLACGVSLQSWVCTDGFAGNAWRSSPSGNKAEKTATHTCVAAPPAEAATAGWQQRR--PAARVLASRSSCRRVSGATIACSRTESASTLQVQENGGGDTQQLGDAPWEDGEGAAADEIEAAGAGGASTPSGTDEEDRSKRR--KRKPVTANGGRNKLFDLLNDLEGGGGGGLEAIELLGVEKTAHGVGGSSSSMLLEGAA 202
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7571.16472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRQ1_ECTSI7.130e-3148.04Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7571contigL-elsbetiae_contig7571:1586..2377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog2880.D8LRQ1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_000630.1
Exons1
Model size793
Cds size792
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.0649254-CDS-L-elsbetiae_contig7571:1585..23771622816841.0649254-CDS-L-elsbetiae_contig7571:1585..2377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7571 1586..2377 +
1691683853.9969614-CDS-L-elsbetiae_contig7571:1585..23771691683853.9969614-CDS-L-elsbetiae_contig7571:1585..2377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7571 1586..2377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7571.16472.1prot_L-elsbetiae_contig7571.16472.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7571 1586..2377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7571.16472.1

>prot_L-elsbetiae_contig7571.16472.1 ID=prot_L-elsbetiae_contig7571.16472.1|Name=mRNA_L-elsbetiae_contig7571.16472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=264bp
SRSSQTQDQRQGERDTFEERGEQRMGLAGHGGQMVRRLPSDGRQRRERHH
HRIEQHHVASLAHRRRRPDRIRRACTLLACGWSFQSWGCTDGFTGSSWRT
SSKATSATTRTQPPSSCATTSVWQQRRAPPYAAVAASRSRRRITGATLAC
SQTGAASTLEVQENGGEGTKLGGTAWVEDDLEAAAAAQAEAAADEEAPDV
NSKRGKQRKPNNANIGRNKLFDLLNDLEGGGGCDSIDLLDIGGVAAEGSS
SSSSVVVDGEAMVD
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mRNA from alignment at L-elsbetiae_contig7571:1586..2377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7571.16472.1 ID=mRNA_L-elsbetiae_contig7571.16472.1|Name=mRNA_L-elsbetiae_contig7571.16472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig7571:1586..2377+ (Laminarionema elsbetiae ELsaHSoW15)
TCACGTAGCTCTCAAACGCAAGACCAGCGACAAGGAGAAAGAGACACATT
TGAGGAGCGTGGAGAGCAACGGATGGGCCTTGCTGGTCACGGTGGACAAA
TGGTCCGTCGCTTGCCTTCAGACGGTCGACAAAGGAGGGAACGGCATCAT
CATCGAATAGAGCAGCATCATGTGGCCTCACTCGCGCATCGACGGCGCAG
ACCAGACCGGATTAGGAGAGCATGCACGCTCCTGGCGTGCGGCTGGAGCT
TCCAGAGCTGGGGTTGCACGGACGGTTTCACCGGCAGTTCCTGGAGGACA
TCGTCCAAAGCAACATCAGCAACAACACGCACGCAGCCGCCTTCCTCCTG
TGCGACGACGTCCGTCTGGCAGCAACGACGGGCACCGCCATACGCAGCAG
TAGCAGCATCGCGCAGCCGCCGCCGCATCACGGGCGCAACACTCGCGTGC
AGCCAGACCGGAGCCGCCTCCACGCTAGAGGTGCAAGAGAATGGTGGGGA
GGGCACGAAGCTCGGGGGCACAGCCTGGGTTGAGGACGACTTGGAGGCGG
CGGCGGCGGCCCAAGCAGAGGCGGCGGCGGACGAGGAGGCACCCGACGTC
AACAGCAAGAGAGGGAAGCAGCGCAAGCCGAATAACGCCAACATCGGGCG
AAACAAGCTCTTCGACCTCCTCAACGACCTGGAAGGCGGGGGCGGGTGCG
ACTCCATCGATTTGCTGGATATCGGCGGCGTGGCGGCCGAGGGCAGCAGC
AGCAGCAGCAGCGTTGTAGTCGACGGGGAGGCGATGGTAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7571:1586..2377+

>mRNA_L-elsbetiae_contig7571.16472.1 ID=mRNA_L-elsbetiae_contig7571.16472.1|Name=mRNA_L-elsbetiae_contig7571.16472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1584bp|location=Sequence derived from alignment at L-elsbetiae_contig7571:1586..2377+ (Laminarionema elsbetiae ELsaHSoW15)
TCACGTAGCTCTCAAACGCAAGACCAGCGACAAGGAGAAAGAGACACATT
TGAGGAGCGTGGAGAGCAACGGATGGGCCTTGCTGGTCACGGTGGACAAA
TGGTCCGTCGCTTGCCTTCAGACGGTCGACAAAGGAGGGAACGGCATCAT
CATCGAATAGAGCAGCATCATGTGGCCTCACTCGCGCATCGACGGCGCAG
ACCAGACCGGATTAGGAGAGCATGCACGCTCCTGGCGTGCGGCTGGAGCT
TCCAGAGCTGGGGTTGCACGGACGGTTTCACCGGCAGTTCCTGGAGGACA
TCGTCCAAAGCAACATCAGCAACAACACGCACGCAGCCGCCTTCCTCCTG
TGCGACGACGTCCGTCTGGCAGCAACGACGGGCACCGCCATACGCAGCAG
TAGCAGCATCGCGCAGCCGCCGCCGCATCACGGGCGCAACACTCGCGTGC
AGCCAGACCGGAGCCGCCTCCACGCTAGAGGTGCAAGAGAATGGTGGGGA
GGGCACGAAGCTCGGGGGCACAGCCTGGGTTGAGGACGACTTGGAGGCGG
CGGCGGCGGCCCAAGCAGAGGCGGCGGCGGACGAGGAGGCACCCGACGTC
AACAGCAAGAGAGGGAAGCAGCGCAAGCCGAATAACGCCAACATCGGGCG
AAACAAGCTCTTCGACCTCCTCAACGACCTGGAAGGCGGGGGCGGGTGCG
ACTCCATCGATTTGCTGGATATCGGCGGCGTGGCGGCCGAGGGCAGCAGC
AGCAGCAGCAGCGTTGTAGTCGACGGGGAGGCGATGGTAGACTCACGTAG
CTCTCAAACGCAAGACCAGCGACAAGGAGAAAGAGACACATTTGAGGAGC
GTGGAGAGCAACGGATGGGCCTTGCTGGTCACGGTGGACAAATGGTCCGT
CGCTTGCCTTCAGACGGTCGACAAAGGAGGGAACGGCATCATCATCGAAT
AGAGCAGCATCATGTGGCCTCACTCGCGCATCGACGGCGCAGACCAGACC
GGATTAGGAGAGCATGCACGCTCCTGGCGTGCGGCTGGAGCTTCCAGAGC
TGGGGTTGCACGGACGGTTTCACCGGCAGTTCCTGGAGGACATCGTCCAA
AGCAACATCAGCAACAACACGCACGCAGCCGCCTTCCTCCTGTGCGACGA
CGTCCGTCTGGCAGCAACGACGGGCACCGCCATACGCAGCAGTAGCAGCA
TCGCGCAGCCGCCGCCGCATCACGGGCGCAACACTCGCGTGCAGCCAGAC
CGGAGCCGCCTCCACGCTAGAGGTGCAAGAGAATGGTGGGGAGGGCACGA
AGCTCGGGGGCACAGCCTGGGTTGAGGACGACTTGGAGGCGGCGGCGGCG
GCCCAAGCAGAGGCGGCGGCGGACGAGGAGGCACCCGACGTCAACAGCAA
GAGAGGGAAGCAGCGCAAGCCGAATAACGCCAACATCGGGCGAAACAAGC
TCTTCGACCTCCTCAACGACCTGGAAGGCGGGGGCGGGTGCGACTCCATC
GATTTGCTGGATATCGGCGGCGTGGCGGCCGAGGGCAGCAGCAGCAGCAG
CAGCGTTGTAGTCGACGGGGAGGCGATGGTAGAC
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